Wall clock time and date at job start Tue Mar 31 2020 00:38:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46500 * 109.47105 * 2 1 4 4 C 1.37102 * 119.99800 * 264.77379 * 3 2 1 5 5 H 1.07998 * 120.00182 * 138.85115 * 4 3 2 6 6 C 1.38949 * 119.99874 * 318.84541 * 4 3 2 7 7 N 1.31408 * 120.00101 * 341.83063 * 6 4 3 8 8 Si 1.86801 * 119.99965 * 161.82994 * 6 4 3 9 9 H 1.48504 * 109.46793 * 359.97438 * 8 6 4 10 10 H 1.48494 * 109.47350 * 120.00114 * 8 6 4 11 11 H 1.48509 * 109.47183 * 240.00209 * 8 6 4 12 12 C 1.34771 * 120.00185 * 84.76629 * 3 2 1 13 13 O 1.21297 * 120.00012 * 180.02562 * 12 3 2 14 14 C 1.50699 * 119.99811 * 0.02562 * 12 3 2 15 15 C 1.53002 * 109.46910 * 179.97438 * 14 12 3 16 16 C 1.53003 * 109.47105 * 179.97438 * 15 14 12 17 17 O 1.42898 * 109.47050 * 179.97438 * 16 15 14 18 18 C 1.35916 * 116.99907 * 179.97438 * 17 16 15 19 19 C 1.39142 * 120.47178 * 180.23911 * 18 17 16 20 20 C 1.38541 * 118.36861 * 180.24003 * 19 18 17 21 21 C 1.38256 * 119.22337 * 359.48256 * 20 19 18 22 22 N 1.31847 * 120.88575 * 0.29321 * 21 20 19 23 23 C 1.31843 * 121.77989 * 359.97438 * 22 21 20 24 24 H 1.09005 * 109.46667 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47099 * 299.99814 * 1 2 3 26 26 H 1.08993 * 109.47771 * 60.00066 * 1 2 3 27 27 H 1.09005 * 109.47415 * 240.00071 * 2 1 3 28 28 H 1.09002 * 109.47592 * 120.00027 * 2 1 3 29 29 H 0.97005 * 120.00400 * 179.97438 * 7 6 4 30 30 H 1.08994 * 109.47472 * 59.99587 * 14 12 3 31 31 H 1.08999 * 109.46945 * 299.99228 * 14 12 3 32 32 H 1.08995 * 109.47723 * 59.99390 * 15 14 12 33 33 H 1.09007 * 109.47188 * 299.99500 * 15 14 12 34 34 H 1.08994 * 109.47338 * 59.99722 * 16 15 14 35 35 H 1.08999 * 109.46884 * 299.99482 * 16 15 14 36 36 H 1.07996 * 120.81589 * 0.02562 * 19 18 17 37 37 H 1.08002 * 120.38612 * 179.75409 * 20 19 18 38 38 H 1.08000 * 119.55572 * 180.27688 * 21 20 19 39 39 H 1.08005 * 119.65486 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3487 1.9914 -1.1824 5 1 2.0741 3.0218 -1.3536 6 6 3.0370 1.2842 -2.1606 7 7 3.6791 0.1819 -1.8451 8 14 3.0497 1.9004 -3.9240 9 1 2.2571 3.1529 -4.0163 10 1 4.4485 2.1670 -4.3452 11 1 2.4529 0.8709 -4.8124 12 6 2.1425 2.0521 1.1623 13 8 2.5464 3.1958 1.1622 14 6 1.7797 1.3811 2.4620 15 6 2.0116 2.3538 3.6201 16 6 1.6426 1.6728 4.9396 17 8 1.8597 2.5810 6.0213 18 6 1.5781 2.1296 7.2720 19 6 1.7584 2.9553 8.3774 20 6 1.4625 2.4488 9.6325 21 6 0.9914 1.1538 9.7439 22 7 0.8273 0.3990 8.6754 23 6 1.1021 0.8411 7.4641 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 4.1593 -0.3121 -2.5280 30 1 2.4016 0.4969 2.6005 31 1 0.7303 1.0872 2.4385 32 1 1.3899 3.2383 3.4818 33 1 3.0611 2.6474 3.6434 34 1 2.2639 0.7882 5.0782 35 1 0.5930 1.3797 4.9161 36 1 2.1233 3.9649 8.2601 37 1 1.5942 3.0600 10.5131 38 1 0.7548 0.7551 10.7194 39 1 0.9553 0.1930 6.6127 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079733464.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:38:37 Heat of formation + Delta-G solvation = -63.683805 kcal Electronic energy + Delta-G solvation = -20826.858371 eV Core-core repulsion = 17541.052581 eV Total energy + Delta-G solvation = -3285.805790 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -41.55716 -40.49334 -39.18195 -36.95401 -34.91914 -33.91340 -33.19139 -31.21506 -31.10378 -28.77219 -26.61413 -24.83938 -24.11115 -23.75285 -22.57785 -20.55477 -19.19594 -18.70723 -17.94670 -17.54995 -17.47163 -17.34108 -16.83940 -16.06693 -15.96881 -15.33857 -15.01062 -14.83132 -14.50465 -14.32869 -14.10384 -13.92145 -13.61629 -13.37644 -13.25049 -12.96467 -12.80497 -12.64681 -12.59956 -12.33521 -12.18455 -12.02203 -11.84521 -11.59476 -10.88313 -10.66780 -10.43485 -10.34626 -9.45303 -9.38587 -8.33919 -6.10240 0.15288 0.30428 1.35851 1.40424 1.53770 2.01684 2.08931 2.31488 2.83299 3.01544 3.13904 3.56634 3.68043 3.83763 3.91174 3.99529 4.08228 4.13699 4.29822 4.35195 4.39525 4.42961 4.57078 4.65951 4.66417 4.70535 4.89303 5.02774 5.05750 5.13079 5.15453 5.26187 5.33810 5.46449 5.58242 5.60760 6.24396 6.26333 6.57092 6.97477 7.20418 7.49430 8.10073 8.69764 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.041967 B = 0.002927 C = 0.002820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.037351 B = 9562.886538 C = 9928.426863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.100 3.900 3 N -0.457 5.457 4 C -0.341 4.341 5 H 0.058 0.942 6 C 0.003 3.997 7 N -0.891 5.891 8 Si 0.980 3.020 9 H -0.272 1.272 10 H -0.280 1.280 11 H -0.263 1.263 12 C 0.445 3.555 13 O -0.633 6.633 14 C -0.117 4.117 15 C -0.091 4.091 16 C 0.064 3.936 17 O -0.326 6.326 18 C 0.065 3.935 19 C -0.124 4.124 20 C -0.122 4.122 21 C 0.047 3.953 22 N -0.478 5.478 23 C 0.002 3.998 24 H 0.085 0.915 25 H 0.059 0.941 26 H 0.038 0.962 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.273 0.727 30 H 0.103 0.897 31 H 0.112 0.888 32 H 0.060 0.940 33 H 0.054 0.946 34 H 0.082 0.918 35 H 0.087 0.913 36 H 0.152 0.848 37 H 0.177 0.823 38 H 0.185 0.815 39 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.807 -2.878 18.555 19.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.023 4.023 3 N -0.176 5.176 4 C -0.470 4.470 5 H 0.076 0.924 6 C -0.199 4.199 7 N -0.529 5.529 8 Si 0.803 3.197 9 H -0.197 1.197 10 H -0.206 1.206 11 H -0.187 1.187 12 C 0.235 3.765 13 O -0.520 6.520 14 C -0.157 4.157 15 C -0.129 4.129 16 C -0.010 4.010 17 O -0.239 6.239 18 C 0.017 3.983 19 C -0.151 4.151 20 C -0.141 4.141 21 C -0.110 4.110 22 N -0.187 5.187 23 C -0.155 4.155 24 H 0.104 0.896 25 H 0.078 0.922 26 H 0.057 0.943 27 H 0.095 0.905 28 H 0.090 0.910 29 H 0.082 0.918 30 H 0.121 0.879 31 H 0.130 0.870 32 H 0.079 0.921 33 H 0.073 0.927 34 H 0.100 0.900 35 H 0.105 0.895 36 H 0.170 0.830 37 H 0.194 0.806 38 H 0.202 0.798 39 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -6.740 -3.160 18.435 19.881 hybrid contribution 0.655 1.092 -1.412 1.901 sum -6.085 -2.068 17.023 18.195 Atomic orbital electron populations 1.22121 0.95170 1.02579 1.01431 1.21590 0.94074 0.83362 1.03258 1.43785 1.56168 1.13105 1.04544 1.19345 1.36468 0.98018 0.93127 0.92418 1.26136 0.93220 0.96670 1.03897 1.69988 1.29549 1.18184 1.35152 0.85098 0.78006 0.78665 0.77892 1.19662 1.20562 1.18731 1.21362 0.80904 0.87491 0.86697 1.90485 1.52327 1.21218 1.87946 1.21445 1.04662 0.99214 0.90375 1.21047 1.02287 0.98493 0.91080 1.22930 1.02519 0.92036 0.83531 1.86069 1.82072 1.42778 1.12978 1.20365 0.97227 0.94758 0.85908 1.21352 1.01856 1.01198 0.90653 1.22397 0.96933 0.96953 0.97818 1.23239 0.98072 0.91688 0.98033 1.67555 1.14199 1.37794 0.99184 1.23143 1.01980 0.93711 0.96641 0.89606 0.92237 0.94288 0.90539 0.91013 0.91788 0.87857 0.86998 0.92084 0.92688 0.89976 0.89508 0.83003 0.80570 0.79826 0.81440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.00 10.15 71.98 0.73 -4.27 16 2 C 0.10 4.11 5.41 86.38 0.47 4.58 16 3 N -0.46 -23.13 2.50 -635.54 -1.59 -24.72 16 4 C -0.34 -19.48 8.84 84.04 0.74 -18.73 16 5 H 0.06 3.55 7.82 -2.91 -0.02 3.53 16 6 C 0.00 0.17 4.95 84.93 0.42 0.60 16 7 N -0.89 -48.20 11.61 21.66 0.25 -47.95 16 8 Si 0.98 42.69 29.59 68.60 2.03 44.72 16 9 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 10 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 11 H -0.26 -10.63 7.11 99.48 0.71 -9.93 16 12 C 0.45 21.69 7.59 87.66 0.67 22.35 16 13 O -0.63 -36.68 15.89 -3.08 -0.05 -36.72 16 14 C -0.12 -3.88 4.31 29.85 0.13 -3.75 16 15 C -0.09 -2.87 4.87 30.60 0.15 -2.72 16 16 C 0.06 1.50 4.75 71.98 0.34 1.84 16 17 O -0.33 -8.63 10.15 -92.60 -0.94 -9.57 16 18 C 0.07 1.51 6.71 22.60 0.15 1.66 16 19 C -0.12 -2.34 10.13 22.56 0.23 -2.11 16 20 C -0.12 -1.69 10.11 22.35 0.23 -1.46 16 21 C 0.05 0.77 11.18 84.69 0.95 1.72 16 22 N -0.48 -10.60 10.36 -195.44 -2.02 -12.63 16 23 C 0.00 0.05 10.22 84.80 0.87 0.92 16 24 H 0.09 2.17 8.14 -2.38 -0.02 2.15 16 25 H 0.06 1.71 6.60 -2.39 -0.02 1.70 16 26 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.08 3.56 5.76 -2.38 -0.01 3.55 16 28 H 0.07 2.55 6.66 -2.39 -0.02 2.54 16 29 H 0.27 13.73 8.31 -92.70 -0.77 12.96 16 30 H 0.10 3.03 7.41 -2.39 -0.02 3.02 16 31 H 0.11 3.01 6.54 -2.39 -0.02 2.99 16 32 H 0.06 2.11 8.10 -2.39 -0.02 2.09 16 33 H 0.05 1.98 8.10 -2.38 -0.02 1.96 16 34 H 0.08 1.63 7.68 -2.39 -0.02 1.61 16 35 H 0.09 1.64 7.68 -2.39 -0.02 1.62 16 36 H 0.15 2.44 8.06 -2.91 -0.02 2.42 16 37 H 0.18 1.08 8.06 -2.91 -0.02 1.06 16 38 H 0.18 1.75 8.06 -2.91 -0.02 1.73 16 39 H 0.17 3.14 6.32 -2.91 -0.02 3.12 16 Total: -1.00 -74.14 328.06 4.79 -69.35 By element: Atomic # 1 Polarization: 15.85 SS G_CDS: 1.05 Total: 16.90 kcal Atomic # 6 Polarization: -5.46 SS G_CDS: 6.07 Total: 0.61 kcal Atomic # 7 Polarization: -81.93 SS G_CDS: -3.36 Total: -85.29 kcal Atomic # 8 Polarization: -45.30 SS G_CDS: -0.99 Total: -46.29 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.72 kcal Total: -74.14 4.79 -69.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079733464.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.670 kcal (2) G-P(sol) polarization free energy of solvation -74.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds