Wall clock time and date at job start Tue Mar 31 2020 01:14:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45196 * 109.47267 * 2 1 4 4 C 1.34226 * 116.99966 * 180.02562 * 3 2 1 5 5 O 1.20830 * 120.00124 * 359.97438 * 4 3 2 6 6 C 1.50702 * 120.00231 * 179.97438 * 4 3 2 7 7 N 1.46898 * 109.47149 * 174.31625 * 6 4 3 8 8 C 1.46901 * 111.00321 * 287.76936 * 7 6 4 9 9 C 1.50690 * 109.47193 * 294.41910 * 8 7 6 10 10 H 1.07999 * 120.00258 * 5.33194 * 9 8 7 11 11 C 1.37885 * 119.99998 * 185.32884 * 9 8 7 12 12 N 1.31514 * 120.00033 * 179.97438 * 11 9 8 13 13 Si 1.86798 * 119.99657 * 0.02562 * 11 9 8 14 14 H 1.48494 * 109.47140 * 90.00161 * 13 11 9 15 15 H 1.48506 * 109.46792 * 209.99774 * 13 11 9 16 16 H 1.48497 * 109.47245 * 329.99761 * 13 11 9 17 17 C 1.46899 * 110.99907 * 163.81647 * 7 6 4 18 18 C 1.50706 * 109.47423 * 190.00267 * 17 7 6 19 19 C 1.38230 * 119.61690 * 95.01940 * 18 17 7 20 20 C 1.38631 * 119.15991 * 179.97438 * 19 18 17 21 21 C 1.38670 * 118.42036 * 0.02562 * 20 19 18 22 22 C 1.38192 * 119.16356 * 359.97438 * 21 20 19 23 23 N 1.31857 * 119.61767 * 275.00465 * 18 17 7 24 24 H 1.09005 * 109.46721 * 59.99947 * 1 2 3 25 25 H 1.08995 * 109.47650 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47475 * 300.00679 * 1 2 3 27 27 H 1.08996 * 109.46980 * 239.99334 * 2 1 3 28 28 H 1.09001 * 109.46814 * 119.99563 * 2 1 3 29 29 H 1.08996 * 109.46876 * 54.32062 * 6 4 3 30 30 H 1.08995 * 109.46963 * 294.31982 * 6 4 3 31 31 H 1.09004 * 109.47039 * 54.42457 * 8 7 6 32 32 H 1.09007 * 109.46714 * 174.41832 * 8 7 6 33 33 H 0.96994 * 120.00113 * 179.97438 * 12 11 9 34 34 H 1.08997 * 109.47157 * 70.00118 * 17 7 6 35 35 H 1.09005 * 109.46993 * 310.00301 * 17 7 6 36 36 H 1.08000 * 120.42147 * 359.96162 * 19 18 17 37 37 H 1.07989 * 120.78871 * 180.02562 * 20 19 18 38 38 H 1.08000 * 120.41922 * 179.97438 * 21 20 19 39 39 H 1.07997 * 119.61754 * 180.28054 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5447 -0.0005 5 8 4.0808 0.5865 -0.0005 6 6 3.9208 2.9373 -0.0012 7 7 5.3816 2.8630 0.1355 8 6 5.7635 2.4684 1.4980 9 6 5.3576 3.5493 2.4664 10 1 4.7893 4.3997 2.1194 11 6 5.7115 3.4527 3.7955 12 7 5.3577 4.3962 4.6405 13 14 6.6949 1.9822 4.3955 14 1 8.1457 2.2796 4.2875 15 1 6.3512 1.7020 5.8128 16 1 6.3694 0.7961 3.5634 17 6 6.0108 4.1362 -0.2398 18 6 7.5042 3.9526 -0.3251 19 6 8.0903 3.6799 -1.5469 20 6 9.4649 3.5133 -1.6145 21 6 10.2019 3.6272 -0.4454 22 6 9.5463 3.9016 0.7398 23 7 8.2367 4.0542 0.7666 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.5062 3.5023 0.8336 30 1 3.6683 3.4345 -0.9376 31 1 5.2612 1.5375 1.7610 32 1 6.8430 2.3247 1.5455 33 1 5.6064 4.3281 5.5755 34 1 5.7799 4.8910 0.5118 35 1 5.6285 4.4588 -1.2083 36 1 7.4850 3.5975 -2.4375 37 1 9.9503 3.2999 -2.5553 38 1 11.2746 3.5031 -0.4609 39 1 10.1136 3.9963 1.6539 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081159312.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:14:22 Heat of formation + Delta-G solvation = -34.626319 kcal Electronic energy + Delta-G solvation = -21863.580841 eV Core-core repulsion = 18579.035078 eV Total energy + Delta-G solvation = -3284.545762 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -40.04290 -39.69219 -37.00891 -35.70218 -32.38160 -32.07116 -31.69658 -31.27360 -28.36451 -27.32408 -24.56017 -23.11775 -22.94029 -22.07943 -20.80983 -19.55407 -17.46387 -16.88680 -16.38588 -16.27093 -15.76929 -15.65407 -14.96345 -14.87925 -14.39779 -14.06710 -13.71132 -13.13817 -12.99981 -12.85665 -12.71472 -12.39803 -12.30704 -11.93387 -11.54669 -11.39181 -11.30700 -11.17438 -11.07060 -10.76279 -10.36440 -10.20580 -9.90760 -9.76495 -9.51092 -9.41379 -8.78186 -8.62960 -8.45059 -7.32608 -6.00282 -3.97188 1.49808 1.70209 2.81250 3.02090 3.38180 3.43492 3.51704 4.19777 4.52413 4.75229 5.00627 5.02408 5.06593 5.12747 5.20177 5.24807 5.36729 5.38146 5.40592 5.51507 5.65983 5.78538 5.84516 5.85043 5.99102 6.01413 6.08676 6.19296 6.38759 6.49760 6.67110 6.83565 6.92164 7.10000 7.27644 7.55806 7.88399 7.95927 8.38547 8.49013 8.60062 8.97241 9.65028 11.12768 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.013331 B = 0.006585 C = 0.004944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2099.933175 B = 4251.353333 C = 5662.333805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.062 3.938 3 O -0.365 6.365 4 C 0.467 3.533 5 O -0.493 6.493 6 C 0.066 3.934 7 N -0.517 5.517 8 C 0.154 3.846 9 C -0.537 4.537 10 H 0.074 0.926 11 C 0.082 3.918 12 N -0.900 5.900 13 Si 0.872 3.128 14 H -0.274 1.274 15 H -0.290 1.290 16 H -0.267 1.267 17 C 0.104 3.896 18 C 0.156 3.844 19 C -0.162 4.162 20 C -0.085 4.085 21 C -0.187 4.187 22 C 0.096 3.904 23 N -0.445 5.445 24 H 0.064 0.936 25 H 0.074 0.926 26 H 0.067 0.933 27 H 0.065 0.935 28 H 0.067 0.933 29 H 0.096 0.904 30 H 0.099 0.901 31 H 0.029 0.971 32 H 0.038 0.962 33 H 0.261 0.739 34 H 0.078 0.922 35 H 0.072 0.928 36 H 0.130 0.870 37 H 0.126 0.874 38 H 0.126 0.874 39 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.523 -3.199 -12.920 13.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.012 4.012 3 O -0.283 6.283 4 C 0.309 3.691 5 O -0.378 6.378 6 C -0.063 4.063 7 N -0.242 5.242 8 C 0.028 3.972 9 C -0.576 4.576 10 H 0.092 0.908 11 C -0.120 4.120 12 N -0.539 5.539 13 Si 0.700 3.300 14 H -0.200 1.200 15 H -0.217 1.217 16 H -0.192 1.192 17 C -0.024 4.024 18 C 0.017 3.983 19 C -0.183 4.183 20 C -0.111 4.111 21 C -0.207 4.207 22 C -0.062 4.062 23 N -0.153 5.153 24 H 0.083 0.917 25 H 0.093 0.907 26 H 0.086 0.914 27 H 0.083 0.917 28 H 0.085 0.915 29 H 0.113 0.887 30 H 0.117 0.883 31 H 0.047 0.953 32 H 0.056 0.944 33 H 0.071 0.929 34 H 0.096 0.904 35 H 0.091 0.909 36 H 0.148 0.852 37 H 0.144 0.856 38 H 0.144 0.856 39 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -0.564 -3.659 -12.260 12.807 hybrid contribution 0.877 -0.577 0.320 1.098 sum 0.314 -4.237 -11.940 12.673 Atomic orbital electron populations 1.21784 0.93069 1.02501 1.03415 1.22891 0.94947 0.81080 1.02275 1.86491 1.25410 1.31600 1.84817 1.23808 0.79831 0.93217 0.72233 1.90621 1.60113 1.43002 1.44075 1.21447 0.90904 0.89897 1.04059 1.62168 1.04258 1.28171 1.29585 1.20295 0.97282 0.96371 0.83288 1.21444 1.35834 1.07230 0.93071 0.90833 1.24762 0.94958 0.95547 0.96745 1.69911 1.46836 1.33373 1.03774 0.86891 0.81313 0.84140 0.77652 1.19993 1.21659 1.19196 1.20886 0.87923 0.92924 1.00657 1.21133 0.96228 0.92881 0.88026 1.21932 0.95247 1.01819 0.99262 1.21442 0.94079 0.97284 0.98308 1.22060 1.00864 1.03599 0.94202 1.22825 0.90812 0.95134 0.97431 1.67777 1.06212 1.10812 1.30529 0.91696 0.90681 0.91432 0.91702 0.91476 0.88680 0.88261 0.95268 0.94418 0.92906 0.90384 0.90921 0.85247 0.85573 0.85593 0.83405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 10.29 37.16 0.38 -1.13 16 2 C 0.06 0.85 6.19 37.16 0.23 1.08 16 3 O -0.37 -6.13 10.22 -39.25 -0.40 -6.54 16 4 C 0.47 9.01 7.53 36.01 0.27 9.28 16 5 O -0.49 -10.92 14.92 -18.75 -0.28 -11.20 16 6 C 0.07 1.22 5.43 -4.98 -0.03 1.19 16 7 N -0.52 -10.85 4.29 -238.97 -1.03 -11.87 16 8 C 0.15 3.88 3.55 -4.98 -0.02 3.86 16 9 C -0.54 -14.89 7.88 -34.44 -0.27 -15.16 16 10 H 0.07 2.14 6.21 -52.49 -0.33 1.81 16 11 C 0.08 2.40 5.47 -17.82 -0.10 2.31 16 12 N -0.90 -27.62 13.96 55.43 0.77 -26.85 16 13 Si 0.87 22.81 27.37 -169.99 -4.65 18.16 16 14 H -0.27 -7.07 7.11 56.52 0.40 -6.66 16 15 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 16 H -0.27 -7.01 6.70 56.52 0.38 -6.63 16 17 C 0.10 1.95 5.04 -4.97 -0.03 1.92 16 18 C 0.16 2.93 5.69 -82.58 -0.47 2.46 16 19 C -0.16 -2.47 9.72 -39.44 -0.38 -2.86 16 20 C -0.09 -1.14 10.18 -39.28 -0.40 -1.54 16 21 C -0.19 -2.61 10.11 -39.44 -0.40 -3.01 16 22 C 0.10 1.65 11.18 -17.55 -0.20 1.45 16 23 N -0.44 -9.26 8.89 -9.47 -0.08 -9.34 16 24 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 27 H 0.06 0.84 8.13 -51.93 -0.42 0.42 16 28 H 0.07 0.97 8.13 -51.93 -0.42 0.55 16 29 H 0.10 1.90 6.48 -51.93 -0.34 1.56 16 30 H 0.10 1.43 7.80 -51.93 -0.41 1.02 16 31 H 0.03 0.80 6.01 -51.93 -0.31 0.49 16 32 H 0.04 1.01 5.58 -51.93 -0.29 0.72 16 33 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 34 H 0.08 1.67 6.29 -51.93 -0.33 1.34 16 35 H 0.07 1.07 7.76 -51.93 -0.40 0.67 16 36 H 0.13 1.65 8.06 -52.49 -0.42 1.23 16 37 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 38 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 39 H 0.15 2.27 8.06 -52.49 -0.42 1.85 16 LS Contribution 326.18 15.07 4.92 4.92 Total: -1.00 -34.40 326.18 -7.52 -41.92 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: -5.36 Total: 0.95 kcal Atomic # 6 Polarization: 1.26 SS G_CDS: -1.40 Total: -0.15 kcal Atomic # 7 Polarization: -47.73 SS G_CDS: -0.34 Total: -48.06 kcal Atomic # 8 Polarization: -17.05 SS G_CDS: -0.68 Total: -17.73 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -4.65 Total: 18.16 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -34.40 -7.52 -41.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081159312.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.293 kcal (2) G-P(sol) polarization free energy of solvation -34.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds