Wall clock time and date at job start Tue Mar 31 2020 01:14:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45196 * 109.47267 * 2 1 4 4 C 1.34226 * 116.99966 * 180.02562 * 3 2 1 5 5 O 1.20830 * 120.00124 * 359.97438 * 4 3 2 6 6 C 1.50702 * 120.00231 * 179.97438 * 4 3 2 7 7 N 1.46898 * 109.47149 * 174.31625 * 6 4 3 8 8 C 1.46901 * 111.00321 * 287.76936 * 7 6 4 9 9 C 1.50690 * 109.47193 * 294.41910 * 8 7 6 10 10 H 1.07999 * 120.00258 * 5.33194 * 9 8 7 11 11 C 1.37885 * 119.99998 * 185.32884 * 9 8 7 12 12 N 1.31514 * 120.00033 * 179.97438 * 11 9 8 13 13 Si 1.86798 * 119.99657 * 0.02562 * 11 9 8 14 14 H 1.48494 * 109.47140 * 90.00161 * 13 11 9 15 15 H 1.48506 * 109.46792 * 209.99774 * 13 11 9 16 16 H 1.48497 * 109.47245 * 329.99761 * 13 11 9 17 17 C 1.46899 * 110.99907 * 163.81647 * 7 6 4 18 18 C 1.50706 * 109.47423 * 190.00267 * 17 7 6 19 19 C 1.38230 * 119.61690 * 95.01940 * 18 17 7 20 20 C 1.38631 * 119.15991 * 179.97438 * 19 18 17 21 21 C 1.38670 * 118.42036 * 0.02562 * 20 19 18 22 22 C 1.38192 * 119.16356 * 359.97438 * 21 20 19 23 23 N 1.31857 * 119.61767 * 275.00465 * 18 17 7 24 24 H 1.09005 * 109.46721 * 59.99947 * 1 2 3 25 25 H 1.08995 * 109.47650 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47475 * 300.00679 * 1 2 3 27 27 H 1.08996 * 109.46980 * 239.99334 * 2 1 3 28 28 H 1.09001 * 109.46814 * 119.99563 * 2 1 3 29 29 H 1.08996 * 109.46876 * 54.32062 * 6 4 3 30 30 H 1.08995 * 109.46963 * 294.31982 * 6 4 3 31 31 H 1.09004 * 109.47039 * 54.42457 * 8 7 6 32 32 H 1.09007 * 109.46714 * 174.41832 * 8 7 6 33 33 H 0.96994 * 120.00113 * 179.97438 * 12 11 9 34 34 H 1.08997 * 109.47157 * 70.00118 * 17 7 6 35 35 H 1.09005 * 109.46993 * 310.00301 * 17 7 6 36 36 H 1.08000 * 120.42147 * 359.96162 * 19 18 17 37 37 H 1.07989 * 120.78871 * 180.02562 * 20 19 18 38 38 H 1.08000 * 120.41922 * 179.97438 * 21 20 19 39 39 H 1.07997 * 119.61754 * 180.28054 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5447 -0.0005 5 8 4.0808 0.5865 -0.0005 6 6 3.9208 2.9373 -0.0012 7 7 5.3816 2.8630 0.1355 8 6 5.7635 2.4684 1.4980 9 6 5.3576 3.5493 2.4664 10 1 4.7893 4.3997 2.1194 11 6 5.7115 3.4527 3.7955 12 7 5.3577 4.3962 4.6405 13 14 6.6949 1.9822 4.3955 14 1 8.1457 2.2796 4.2875 15 1 6.3512 1.7020 5.8128 16 1 6.3694 0.7961 3.5634 17 6 6.0108 4.1362 -0.2398 18 6 7.5042 3.9526 -0.3251 19 6 8.0903 3.6799 -1.5469 20 6 9.4649 3.5133 -1.6145 21 6 10.2019 3.6272 -0.4454 22 6 9.5463 3.9016 0.7398 23 7 8.2367 4.0542 0.7666 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.5062 3.5023 0.8336 30 1 3.6683 3.4345 -0.9376 31 1 5.2612 1.5375 1.7610 32 1 6.8430 2.3247 1.5455 33 1 5.6064 4.3281 5.5755 34 1 5.7799 4.8910 0.5118 35 1 5.6285 4.4588 -1.2083 36 1 7.4850 3.5975 -2.4375 37 1 9.9503 3.2999 -2.5553 38 1 11.2746 3.5031 -0.4609 39 1 10.1136 3.9963 1.6539 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081159312.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:14:21 Heat of formation + Delta-G solvation = -58.451045 kcal Electronic energy + Delta-G solvation = -21864.613958 eV Core-core repulsion = 18579.035078 eV Total energy + Delta-G solvation = -3285.578880 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.49869 -40.96860 -38.55476 -37.23231 -34.54967 -33.28091 -32.86130 -32.49381 -30.23685 -28.81920 -26.21463 -24.40274 -24.19921 -23.48105 -22.19374 -21.23683 -19.31897 -18.57066 -17.72777 -17.60404 -17.12607 -17.00557 -16.42955 -16.30623 -16.08911 -15.87626 -15.08463 -14.54411 -14.47724 -14.23075 -14.05310 -13.71190 -13.52967 -13.41765 -13.08989 -12.91780 -12.84884 -12.68416 -12.46259 -12.37778 -12.25396 -11.88947 -11.70571 -11.47058 -11.33009 -10.75456 -10.63174 -10.06666 -9.85644 -9.07364 -8.28430 -6.26629 0.29181 0.55613 1.26824 1.28142 1.29817 1.39360 1.69480 2.33087 2.90696 3.09727 3.41118 3.66195 3.88642 3.92404 4.02127 4.11709 4.13555 4.29889 4.33275 4.36580 4.39279 4.52802 4.60998 4.77652 4.86121 4.93002 4.94743 5.00725 5.08225 5.13216 5.17445 5.36314 5.37754 5.48418 5.52598 5.93576 5.99157 6.21012 6.26731 6.72811 6.90247 7.35254 7.38082 8.87551 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.013331 B = 0.006585 C = 0.004944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2099.933175 B = 4251.353333 C = 5662.333805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.052 3.948 3 O -0.365 6.365 4 C 0.469 3.531 5 O -0.527 6.527 6 C 0.064 3.936 7 N -0.517 5.517 8 C 0.174 3.826 9 C -0.520 4.520 10 H 0.051 0.949 11 C 0.029 3.971 12 N -0.940 5.940 13 Si 0.925 3.075 14 H -0.269 1.269 15 H -0.282 1.282 16 H -0.271 1.271 17 C 0.107 3.893 18 C 0.120 3.880 19 C -0.157 4.157 20 C -0.079 4.079 21 C -0.172 4.172 22 C 0.066 3.934 23 N -0.503 5.503 24 H 0.075 0.925 25 H 0.102 0.898 26 H 0.062 0.938 27 H 0.073 0.927 28 H 0.054 0.946 29 H 0.076 0.924 30 H 0.147 0.853 31 H 0.006 0.994 32 H 0.025 0.975 33 H 0.263 0.737 34 H 0.040 0.960 35 H 0.117 0.883 36 H 0.158 0.842 37 H 0.171 0.829 38 H 0.164 0.836 39 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.096 -4.168 -15.641 16.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.022 4.022 3 O -0.282 6.282 4 C 0.312 3.688 5 O -0.415 6.415 6 C -0.065 4.065 7 N -0.241 5.241 8 C 0.047 3.953 9 C -0.558 4.558 10 H 0.069 0.931 11 C -0.169 4.169 12 N -0.582 5.582 13 Si 0.751 3.249 14 H -0.194 1.194 15 H -0.207 1.207 16 H -0.195 1.195 17 C -0.020 4.020 18 C -0.018 4.018 19 C -0.177 4.177 20 C -0.104 4.104 21 C -0.192 4.192 22 C -0.091 4.091 23 N -0.213 5.213 24 H 0.094 0.906 25 H 0.120 0.880 26 H 0.081 0.919 27 H 0.092 0.908 28 H 0.072 0.928 29 H 0.094 0.906 30 H 0.165 0.835 31 H 0.024 0.976 32 H 0.043 0.957 33 H 0.072 0.928 34 H 0.059 0.941 35 H 0.135 0.865 36 H 0.176 0.824 37 H 0.188 0.812 38 H 0.181 0.819 39 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 0.035 -4.623 -14.995 15.691 hybrid contribution 0.660 -0.249 1.054 1.269 sum 0.696 -4.872 -13.941 14.784 Atomic orbital electron populations 1.21809 0.89961 1.04399 1.03756 1.23264 0.97357 0.79455 1.02110 1.86487 1.23910 1.33634 1.84127 1.23929 0.80460 0.93026 0.71352 1.90602 1.61046 1.43974 1.45869 1.21588 0.89315 0.89884 1.05680 1.62097 1.05867 1.29768 1.26335 1.19870 0.95990 0.94260 0.85230 1.21620 1.34032 1.06817 0.93380 0.93088 1.25457 0.96301 0.97849 0.97280 1.70016 1.48762 1.35245 1.04142 0.86049 0.80288 0.81181 0.77371 1.19409 1.20730 1.19547 1.20974 0.88927 0.90575 1.01553 1.21216 0.95900 0.95407 0.89233 1.22219 0.96596 1.00264 0.98625 1.21973 0.93354 0.95314 0.99807 1.22427 1.02686 1.01005 0.93036 1.23070 0.90144 0.96576 0.99298 1.67604 1.08223 1.12874 1.32597 0.90553 0.87982 0.91855 0.90849 0.92779 0.90628 0.83508 0.97599 0.95697 0.92823 0.94135 0.86475 0.82426 0.81183 0.81877 0.83182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.57 10.29 71.98 0.74 -1.83 16 2 C 0.05 1.37 6.19 71.98 0.45 1.81 16 3 O -0.36 -11.98 10.22 -51.38 -0.53 -12.51 16 4 C 0.47 17.96 7.53 71.24 0.54 18.50 16 5 O -0.53 -23.41 14.92 21.95 0.33 -23.08 16 6 C 0.06 2.33 5.43 85.56 0.46 2.80 16 7 N -0.52 -21.65 4.29 -909.95 -3.90 -25.55 16 8 C 0.17 9.00 3.55 85.55 0.30 9.30 16 9 C -0.52 -29.92 7.88 25.60 0.20 -29.72 16 10 H 0.05 3.12 6.21 -2.91 -0.02 3.10 16 11 C 0.03 1.77 5.47 84.66 0.46 2.23 16 12 N -0.94 -59.64 13.96 21.45 0.30 -59.35 16 13 Si 0.92 48.33 27.37 68.60 1.88 50.20 16 14 H -0.27 -13.68 7.11 99.48 0.71 -12.98 16 15 H -0.28 -14.18 7.11 99.48 0.71 -13.47 16 16 H -0.27 -14.17 6.70 99.48 0.67 -13.50 16 17 C 0.11 3.99 5.04 85.56 0.43 4.42 16 18 C 0.12 4.44 5.69 42.55 0.24 4.69 16 19 C -0.16 -4.32 9.72 22.36 0.22 -4.11 16 20 C -0.08 -1.79 10.18 22.47 0.23 -1.56 16 21 C -0.17 -4.28 10.11 22.36 0.23 -4.05 16 22 C 0.07 2.26 11.18 84.67 0.95 3.20 16 23 N -0.50 -21.29 8.89 -183.87 -1.63 -22.93 16 24 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 25 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 26 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.07 1.81 8.13 -2.39 -0.02 1.79 16 28 H 0.05 1.56 8.13 -2.39 -0.02 1.54 16 29 H 0.08 3.09 6.48 -2.39 -0.02 3.08 16 30 H 0.15 3.87 7.80 -2.39 -0.02 3.85 16 31 H 0.01 0.34 6.01 -2.38 -0.01 0.32 16 32 H 0.02 1.36 5.58 -2.38 -0.01 1.35 16 33 H 0.26 15.76 8.31 -92.71 -0.77 14.99 16 34 H 0.04 1.80 6.29 -2.39 -0.02 1.79 16 35 H 0.12 3.19 7.76 -2.38 -0.02 3.18 16 36 H 0.16 3.33 8.06 -2.91 -0.02 3.31 16 37 H 0.17 2.39 8.06 -2.92 -0.02 2.37 16 38 H 0.16 2.77 8.06 -2.91 -0.02 2.74 16 39 H 0.15 4.70 8.06 -2.91 -0.02 4.67 16 Total: -1.00 -78.59 326.18 2.89 -75.70 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: 1.01 Total: 11.82 kcal Atomic # 6 Polarization: 0.24 SS G_CDS: 5.45 Total: 5.69 kcal Atomic # 7 Polarization: -102.59 SS G_CDS: -5.24 Total: -107.83 kcal Atomic # 8 Polarization: -35.39 SS G_CDS: -0.20 Total: -35.59 kcal Atomic # 14 Polarization: 48.33 SS G_CDS: 1.88 Total: 50.20 kcal Total: -78.59 2.89 -75.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081159312.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.248 kcal (2) G-P(sol) polarization free energy of solvation -78.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds