Wall clock time and date at job start Tue Mar 31 2020 01:02:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45194 * 109.47138 * 2 1 4 4 C 1.34696 * 116.99933 * 179.97438 * 3 2 1 5 5 O 1.21432 * 119.99576 * 359.97438 * 4 3 2 6 6 C 1.48048 * 119.99956 * 179.97438 * 4 3 2 7 7 C 1.39169 * 119.68308 * 180.02562 * 6 4 3 8 8 C 1.38796 * 119.22467 * 179.97438 * 7 6 4 9 9 C 1.38282 * 118.58233 * 359.97438 * 8 7 6 10 10 C 1.39482 * 119.30214 * 359.97438 * 9 8 7 11 11 N 1.38975 * 119.63890 * 180.02562 * 10 9 8 12 12 C 1.46496 * 119.99747 * 0.02562 * 11 10 9 13 13 C 1.53006 * 109.46995 * 180.02562 * 12 11 10 14 14 C 1.52997 * 109.47127 * 180.02562 * 13 12 11 15 15 C 1.50696 * 109.47055 * 179.97438 * 14 13 12 16 16 H 1.08000 * 120.00290 * 0.02562 * 15 14 13 17 17 C 1.37887 * 120.00079 * 179.97438 * 15 14 13 18 18 N 1.31516 * 119.99685 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00129 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.46879 * 60.00177 * 19 17 15 21 21 H 1.48494 * 109.47196 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47151 * 300.00589 * 19 17 15 23 23 N 1.32062 * 120.72524 * 0.28171 * 10 9 8 24 24 H 1.08998 * 109.47517 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47389 * 300.00815 * 1 2 3 26 26 H 1.09007 * 109.46801 * 60.00552 * 1 2 3 27 27 H 1.08999 * 109.47389 * 239.99185 * 2 1 3 28 28 H 1.09007 * 109.46801 * 119.99448 * 2 1 3 29 29 H 1.08003 * 120.38863 * 359.97438 * 7 6 4 30 30 H 1.07997 * 120.70399 * 179.97438 * 8 7 6 31 31 H 1.08002 * 120.35251 * 180.02562 * 9 8 7 32 32 H 0.96998 * 120.00061 * 180.02562 * 11 10 9 33 33 H 1.09001 * 109.47464 * 60.00338 * 12 11 10 34 34 H 1.09001 * 109.47459 * 300.00053 * 12 11 10 35 35 H 1.09001 * 109.47002 * 299.99701 * 13 12 11 36 36 H 1.08993 * 109.46955 * 60.00138 * 13 12 11 37 37 H 1.09001 * 109.47289 * 299.99953 * 14 13 12 38 38 H 1.09004 * 109.47261 * 59.99697 * 14 13 12 39 39 H 0.96999 * 119.99910 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3689 0.0000 4 6 3.3493 1.5454 0.0005 5 8 4.0889 0.5823 0.0015 6 6 3.9152 2.9134 0.0000 7 6 5.2958 3.0881 0.0000 8 6 5.8161 4.3749 -0.0010 9 6 4.9383 5.4434 -0.0026 10 6 3.5651 5.1987 -0.0036 11 7 2.6766 6.2674 -0.0058 12 6 3.1839 7.6417 -0.0075 13 6 2.0072 8.6197 -0.0090 14 6 2.5370 10.0550 -0.0114 15 6 1.3781 11.0182 -0.0136 16 1 0.3649 10.6441 -0.0128 17 6 1.6111 12.3772 -0.0154 18 7 2.8448 12.8328 -0.0159 19 14 0.1745 13.5712 -0.0174 20 1 -0.6538 13.3509 1.1953 21 1 0.6887 14.9643 -0.0198 22 1 -0.6535 13.3475 -1.2296 23 7 3.0999 3.9627 0.0025 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 5.9548 2.2324 0.0008 30 1 6.8837 4.5381 -0.0006 31 1 5.3120 6.4567 -0.0039 32 1 1.7206 6.1032 -0.0061 33 1 3.7923 7.8033 -0.8973 34 1 3.7912 7.8059 0.8826 35 1 1.3996 8.4556 -0.8989 36 1 1.3992 8.4579 0.8810 37 1 3.1449 10.2194 0.8782 38 1 3.1449 10.2164 -0.9017 39 1 3.0088 13.7888 -0.0175 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094155627.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:02:39 Heat of formation + Delta-G solvation = -62.188748 kcal Electronic energy + Delta-G solvation = -20173.464862 eV Core-core repulsion = 16887.723903 eV Total energy + Delta-G solvation = -3285.740959 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.90249 -39.80581 -36.91004 -36.30538 -33.71807 -32.80437 -31.98519 -31.54616 -29.59921 -26.51614 -25.58439 -23.46115 -23.26218 -22.35708 -21.00872 -20.43196 -18.37223 -17.61582 -16.77459 -16.70797 -16.30088 -15.98154 -15.37513 -15.15903 -14.52704 -14.52382 -14.17953 -13.82561 -13.71477 -13.31577 -13.02224 -12.42958 -12.25098 -12.10191 -12.04088 -11.88585 -11.82265 -11.02626 -10.96385 -10.78993 -10.74801 -10.64424 -10.38822 -9.97734 -9.74296 -9.65973 -9.53750 -9.21056 -8.42318 -7.72176 -6.07627 -4.10499 0.49042 1.34321 2.34485 2.35998 3.17754 3.29335 3.34071 3.36613 3.82359 4.21409 4.40398 4.64939 4.66560 4.72150 4.89891 4.98515 5.05152 5.16374 5.28617 5.30867 5.45128 5.51482 5.51567 5.59104 5.71286 5.84115 5.95939 6.07614 6.18612 6.29111 6.48125 6.57092 6.88022 7.00082 7.43508 7.55131 7.67019 7.67539 7.90477 8.06705 8.32231 8.95643 9.54129 11.03652 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.025588 B = 0.002702 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.995293 B =10358.507163 C =11416.148091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.059 3.941 3 O -0.332 6.332 4 C 0.528 3.472 5 O -0.503 6.503 6 C 0.136 3.864 7 C -0.174 4.174 8 C -0.042 4.042 9 C -0.203 4.203 10 C 0.405 3.595 11 N -0.715 5.715 12 C 0.122 3.878 13 C -0.121 4.121 14 C 0.025 3.975 15 C -0.524 4.524 16 H 0.055 0.945 17 C 0.058 3.942 18 N -0.895 5.895 19 Si 0.894 3.106 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.276 1.276 23 N -0.507 5.507 24 H 0.079 0.921 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.143 0.857 30 H 0.143 0.857 31 H 0.143 0.857 32 H 0.406 0.594 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.056 0.944 36 H 0.056 0.944 37 H 0.019 0.981 38 H 0.019 0.981 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.359 -22.282 0.023 22.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.015 4.015 3 O -0.248 6.248 4 C 0.371 3.629 5 O -0.391 6.391 6 C -0.001 4.001 7 C -0.199 4.199 8 C -0.067 4.067 9 C -0.229 4.229 10 C 0.166 3.834 11 N -0.346 5.346 12 C -0.002 4.002 13 C -0.159 4.159 14 C -0.012 4.012 15 C -0.562 4.562 16 H 0.073 0.927 17 C -0.144 4.144 18 N -0.534 5.534 19 Si 0.721 3.279 20 H -0.202 1.202 21 H -0.212 1.212 22 H -0.202 1.202 23 N -0.228 5.228 24 H 0.097 0.903 25 H 0.087 0.913 26 H 0.087 0.913 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.161 0.839 30 H 0.161 0.839 31 H 0.161 0.839 32 H 0.242 0.758 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.037 0.963 38 H 0.037 0.963 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.820 -22.375 0.029 22.449 hybrid contribution -0.216 0.714 -0.003 0.746 sum 1.604 -21.661 0.026 21.720 Atomic orbital electron populations 1.21797 0.92403 1.02842 1.03893 1.23096 0.95672 0.80188 1.02540 1.86716 1.23107 1.31814 1.83117 1.20911 0.80918 0.88653 0.72422 1.90828 1.60771 1.41453 1.46030 1.19531 0.89999 0.89314 1.01282 1.21676 0.94064 0.98781 1.05347 1.21314 1.00379 0.91134 0.93915 1.21838 0.92262 1.01330 1.07480 1.18386 0.88257 0.86363 0.90420 1.44929 1.08052 1.03189 1.78428 1.21773 0.98798 0.78484 1.01121 1.21875 0.95801 0.96891 1.01315 1.19022 0.96670 0.87974 0.97555 1.21163 0.92891 0.91051 1.51109 0.92651 1.25019 0.95668 0.98529 0.95167 1.69943 1.19032 1.13910 1.50492 0.86632 0.82566 0.79999 0.78668 1.20203 1.21247 1.20207 1.67071 1.39271 0.97652 1.18771 0.90255 0.91293 0.91301 0.91165 0.91166 0.83902 0.83889 0.83918 0.75813 0.91941 0.91949 0.92486 0.92484 0.96285 0.96283 0.92836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 10.29 37.16 0.38 -0.68 16 2 C 0.06 0.55 6.19 37.16 0.23 0.78 16 3 O -0.33 -4.28 10.04 -40.48 -0.41 -4.69 16 4 C 0.53 7.24 7.95 34.75 0.28 7.52 16 5 O -0.50 -7.27 16.10 -19.21 -0.31 -7.58 16 6 C 0.14 1.88 6.74 -83.05 -0.56 1.32 16 7 C -0.17 -2.02 9.63 -39.03 -0.38 -2.40 16 8 C -0.04 -0.43 10.16 -39.36 -0.40 -0.83 16 9 C -0.20 -2.47 9.33 -39.10 -0.36 -2.84 16 10 C 0.41 5.78 7.65 -155.20 -1.19 4.59 16 11 N -0.72 -10.21 5.73 -60.41 -0.35 -10.55 16 12 C 0.12 1.84 4.89 -4.04 -0.02 1.82 16 13 C -0.12 -2.24 5.27 -26.73 -0.14 -2.38 16 14 C 0.03 0.61 4.97 -27.89 -0.14 0.47 16 15 C -0.52 -14.27 9.11 -34.44 -0.31 -14.58 16 16 H 0.06 1.46 7.74 -52.49 -0.41 1.06 16 17 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 18 N -0.89 -26.10 13.29 55.43 0.74 -25.36 16 19 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 20 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 21 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 23 N -0.51 -7.58 10.15 -9.01 -0.09 -7.67 16 24 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.07 0.50 8.14 -51.92 -0.42 0.08 16 27 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.07 0.61 8.14 -51.92 -0.42 0.18 16 29 H 0.14 1.44 7.63 -52.48 -0.40 1.04 16 30 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 31 H 0.14 1.57 6.70 -52.49 -0.35 1.22 16 32 H 0.41 5.64 8.60 -40.82 -0.35 5.28 16 33 H 0.06 0.93 7.92 -51.93 -0.41 0.52 16 34 H 0.06 0.93 7.92 -51.93 -0.41 0.52 16 35 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 339.94 15.07 5.12 5.12 Total: -1.00 -31.02 339.94 -8.72 -39.74 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: -5.69 Total: 0.56 kcal Atomic # 6 Polarization: -2.99 SS G_CDS: -2.71 Total: -5.70 kcal Atomic # 7 Polarization: -43.88 SS G_CDS: 0.30 Total: -43.58 kcal Atomic # 8 Polarization: -11.55 SS G_CDS: -0.72 Total: -12.27 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.02 -8.72 -39.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094155627.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.452 kcal (2) G-P(sol) polarization free energy of solvation -31.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds