Wall clock time and date at job start Tue Mar 31 2020 01:02:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45194 * 109.47138 * 2 1 4 4 C 1.34696 * 116.99933 * 179.97438 * 3 2 1 5 5 O 1.21432 * 119.99576 * 359.97438 * 4 3 2 6 6 C 1.48048 * 119.99956 * 179.97438 * 4 3 2 7 7 C 1.39169 * 119.68308 * 180.02562 * 6 4 3 8 8 C 1.38796 * 119.22467 * 179.97438 * 7 6 4 9 9 C 1.38282 * 118.58233 * 359.97438 * 8 7 6 10 10 C 1.39482 * 119.30214 * 359.97438 * 9 8 7 11 11 N 1.38975 * 119.63890 * 180.02562 * 10 9 8 12 12 C 1.46496 * 119.99747 * 0.02562 * 11 10 9 13 13 C 1.53006 * 109.46995 * 180.02562 * 12 11 10 14 14 C 1.52997 * 109.47127 * 180.02562 * 13 12 11 15 15 C 1.50696 * 109.47055 * 179.97438 * 14 13 12 16 16 H 1.08000 * 120.00290 * 0.02562 * 15 14 13 17 17 C 1.37887 * 120.00079 * 179.97438 * 15 14 13 18 18 N 1.31516 * 119.99685 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00129 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.46879 * 60.00177 * 19 17 15 21 21 H 1.48494 * 109.47196 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47151 * 300.00589 * 19 17 15 23 23 N 1.32062 * 120.72524 * 0.28171 * 10 9 8 24 24 H 1.08998 * 109.47517 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47389 * 300.00815 * 1 2 3 26 26 H 1.09007 * 109.46801 * 60.00552 * 1 2 3 27 27 H 1.08999 * 109.47389 * 239.99185 * 2 1 3 28 28 H 1.09007 * 109.46801 * 119.99448 * 2 1 3 29 29 H 1.08003 * 120.38863 * 359.97438 * 7 6 4 30 30 H 1.07997 * 120.70399 * 179.97438 * 8 7 6 31 31 H 1.08002 * 120.35251 * 180.02562 * 9 8 7 32 32 H 0.96998 * 120.00061 * 180.02562 * 11 10 9 33 33 H 1.09001 * 109.47464 * 60.00338 * 12 11 10 34 34 H 1.09001 * 109.47459 * 300.00053 * 12 11 10 35 35 H 1.09001 * 109.47002 * 299.99701 * 13 12 11 36 36 H 1.08993 * 109.46955 * 60.00138 * 13 12 11 37 37 H 1.09001 * 109.47289 * 299.99953 * 14 13 12 38 38 H 1.09004 * 109.47261 * 59.99697 * 14 13 12 39 39 H 0.96999 * 119.99910 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3689 0.0000 4 6 3.3493 1.5454 0.0005 5 8 4.0889 0.5823 0.0015 6 6 3.9152 2.9134 0.0000 7 6 5.2958 3.0881 0.0000 8 6 5.8161 4.3749 -0.0010 9 6 4.9383 5.4434 -0.0026 10 6 3.5651 5.1987 -0.0036 11 7 2.6766 6.2674 -0.0058 12 6 3.1839 7.6417 -0.0075 13 6 2.0072 8.6197 -0.0090 14 6 2.5370 10.0550 -0.0114 15 6 1.3781 11.0182 -0.0136 16 1 0.3649 10.6441 -0.0128 17 6 1.6111 12.3772 -0.0154 18 7 2.8448 12.8328 -0.0159 19 14 0.1745 13.5712 -0.0174 20 1 -0.6538 13.3509 1.1953 21 1 0.6887 14.9643 -0.0198 22 1 -0.6535 13.3475 -1.2296 23 7 3.0999 3.9627 0.0025 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 5.9548 2.2324 0.0008 30 1 6.8837 4.5381 -0.0006 31 1 5.3120 6.4567 -0.0039 32 1 1.7206 6.1032 -0.0061 33 1 3.7923 7.8033 -0.8973 34 1 3.7912 7.8059 0.8826 35 1 1.3996 8.4556 -0.8989 36 1 1.3992 8.4579 0.8810 37 1 3.1449 10.2194 0.8782 38 1 3.1449 10.2164 -0.9017 39 1 3.0088 13.7888 -0.0175 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000094155627.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:02:38 Heat of formation + Delta-G solvation = -79.909286 kcal Electronic energy + Delta-G solvation = -20174.233283 eV Core-core repulsion = 16887.723903 eV Total energy + Delta-G solvation = -3286.509379 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.88745 -40.79414 -37.93411 -37.50229 -35.49171 -33.76627 -33.41766 -32.48041 -30.85358 -28.15340 -26.56607 -24.95498 -24.19719 -23.29124 -22.28617 -21.81727 -19.35333 -18.66928 -18.46397 -17.69148 -17.59166 -16.89883 -16.61984 -16.42013 -16.27841 -15.50201 -15.38880 -14.79262 -14.71643 -14.28445 -14.12515 -13.69317 -13.63804 -13.62605 -13.08916 -12.97124 -12.76120 -12.54130 -12.49103 -12.36329 -12.04888 -11.80802 -11.55810 -11.45894 -11.23134 -11.20253 -10.82610 -10.63159 -10.53102 -8.77862 -8.19377 -6.29309 -0.49121 0.41632 1.33701 1.42050 1.43808 1.47508 1.51743 2.09109 2.42733 2.83711 3.14716 3.26432 3.81732 3.95564 3.99340 4.04821 4.08101 4.21115 4.25225 4.26644 4.31905 4.46135 4.60805 4.76634 4.90370 4.98051 4.98737 5.00637 5.06317 5.17813 5.20404 5.34175 5.44522 5.53111 5.74648 5.86024 5.90264 6.25407 6.42054 6.62014 6.87358 7.03714 7.39743 8.92009 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.025588 B = 0.002702 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.995293 B =10358.507163 C =11416.148091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.050 3.950 3 O -0.347 6.347 4 C 0.527 3.473 5 O -0.517 6.517 6 C 0.111 3.889 7 C -0.166 4.166 8 C -0.029 4.029 9 C -0.207 4.207 10 C 0.387 3.613 11 N -0.719 5.719 12 C 0.138 3.862 13 C -0.106 4.106 14 C 0.028 3.972 15 C -0.545 4.545 16 H 0.059 0.941 17 C 0.002 3.998 18 N -0.931 5.931 19 Si 0.960 3.040 20 H -0.268 1.268 21 H -0.284 1.284 22 H -0.268 1.268 23 N -0.529 5.529 24 H 0.106 0.894 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.159 0.841 30 H 0.183 0.817 31 H 0.155 0.845 32 H 0.406 0.594 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.000 1.000 38 H 0.000 1.000 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.384 -23.028 0.024 23.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.023 4.023 3 O -0.262 6.262 4 C 0.371 3.629 5 O -0.406 6.406 6 C -0.025 4.025 7 C -0.190 4.190 8 C -0.055 4.055 9 C -0.232 4.232 10 C 0.148 3.852 11 N -0.350 5.350 12 C 0.014 3.986 13 C -0.144 4.144 14 C -0.010 4.010 15 C -0.583 4.583 16 H 0.077 0.923 17 C -0.196 4.196 18 N -0.571 5.571 19 Si 0.785 3.215 20 H -0.193 1.193 21 H -0.209 1.209 22 H -0.193 1.193 23 N -0.250 5.250 24 H 0.124 0.876 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.094 0.906 28 H 0.094 0.906 29 H 0.177 0.823 30 H 0.201 0.799 31 H 0.173 0.827 32 H 0.241 0.759 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.018 0.982 38 H 0.018 0.982 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.837 -23.159 0.029 23.232 hybrid contribution -0.187 0.864 -0.003 0.884 sum 1.650 -22.295 0.027 22.356 Atomic orbital electron populations 1.21825 0.90655 1.04451 1.03454 1.23417 0.97068 0.78761 1.03072 1.86711 1.22755 1.33941 1.82796 1.21001 0.81156 0.88660 0.72069 1.90804 1.61044 1.41798 1.46999 1.19781 0.91015 0.89087 1.02625 1.21979 0.93354 1.00032 1.03593 1.21757 1.02094 0.89846 0.91760 1.22093 0.91602 1.02584 1.06900 1.18575 0.89068 0.86087 0.91432 1.44717 1.08128 1.02782 1.79422 1.21441 0.97138 0.78370 1.01615 1.21583 0.96888 0.94479 1.01439 1.18909 0.95479 0.91014 0.95598 1.21663 0.93952 0.92065 1.50610 0.92288 1.25911 0.98331 1.00550 0.94835 1.70064 1.21105 1.14322 1.51575 0.85570 0.79280 0.77541 0.79086 1.19334 1.20932 1.19341 1.66961 1.40263 0.98153 1.19633 0.87586 0.91703 0.91709 0.90634 0.90639 0.82302 0.79929 0.82744 0.75877 0.91476 0.91491 0.92342 0.92341 0.98202 0.98199 0.92757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 10.29 71.98 0.74 -1.16 16 2 C 0.05 0.90 6.19 71.98 0.45 1.34 16 3 O -0.35 -8.94 10.04 -56.05 -0.56 -9.50 16 4 C 0.53 14.35 7.95 70.43 0.56 14.91 16 5 O -0.52 -14.69 16.10 20.05 0.32 -14.36 16 6 C 0.11 2.99 6.74 41.81 0.28 3.28 16 7 C -0.17 -3.51 9.63 22.63 0.22 -3.29 16 8 C -0.03 -0.52 10.16 22.41 0.23 -0.30 16 9 C -0.21 -4.61 9.33 22.58 0.21 -4.40 16 10 C 0.39 10.70 7.65 133.26 1.02 11.72 16 11 N -0.72 -20.06 5.73 -345.04 -1.98 -22.03 16 12 C 0.14 4.09 4.89 86.38 0.42 4.51 16 13 C -0.11 -3.90 5.27 30.60 0.16 -3.74 16 14 C 0.03 1.35 4.97 29.85 0.15 1.50 16 15 C -0.54 -29.81 9.11 25.60 0.23 -29.57 16 16 H 0.06 3.10 7.74 -2.91 -0.02 3.08 16 17 C 0.00 0.10 5.46 84.66 0.46 0.56 16 18 N -0.93 -54.87 13.29 21.45 0.28 -54.58 16 19 Si 0.96 43.21 29.54 68.60 2.03 45.23 16 20 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 21 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 22 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 23 N -0.53 -15.64 10.15 -182.42 -1.85 -17.50 16 24 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 25 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 27 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 29 H 0.16 2.82 7.63 -2.91 -0.02 2.80 16 30 H 0.18 1.76 8.06 -2.91 -0.02 1.74 16 31 H 0.15 3.04 6.70 -2.91 -0.02 3.02 16 32 H 0.41 11.16 8.60 -92.71 -0.80 10.36 16 33 H 0.07 1.93 7.92 -2.39 -0.02 1.91 16 34 H 0.07 1.92 7.92 -2.39 -0.02 1.91 16 35 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 36 H 0.06 2.12 8.14 -2.39 -0.02 2.11 16 37 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 38 H 0.00 -0.02 8.14 -2.38 -0.02 -0.04 16 39 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 Total: -1.00 -66.83 339.94 3.63 -63.20 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: 0.25 Total: 14.18 kcal Atomic # 6 Polarization: -9.76 SS G_CDS: 5.13 Total: -4.63 kcal Atomic # 7 Polarization: -90.57 SS G_CDS: -3.54 Total: -94.11 kcal Atomic # 8 Polarization: -23.63 SS G_CDS: -0.24 Total: -23.87 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.23 kcal Total: -66.83 3.63 -63.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094155627.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.710 kcal (2) G-P(sol) polarization free energy of solvation -66.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds