Wall clock time and date at job start Tue Mar 31 2020 00:30:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46902 * 109.47137 * 2 1 4 4 C 1.46900 * 110.99772 * 297.91975 * 3 2 1 5 5 C 1.50703 * 109.47197 * 293.04716 * 4 3 2 6 6 H 1.08002 * 119.99943 * 354.97230 * 5 4 3 7 7 C 1.37875 * 119.99782 * 174.97839 * 5 4 3 8 8 N 1.31507 * 120.00227 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 119.99778 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47258 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.46822 * 120.00170 * 9 7 5 12 12 H 1.48496 * 109.47327 * 240.00014 * 9 7 5 13 13 C 1.46893 * 111.00006 * 61.87570 * 3 2 1 14 14 C 1.50704 * 109.47422 * 66.04674 * 13 3 2 15 15 C 1.38359 * 119.45378 * 94.99970 * 14 13 3 16 16 C 1.38336 * 119.30768 * 180.02562 * 15 14 13 17 17 C 1.40078 * 118.28636 * 0.27021 * 16 15 14 18 18 C 1.47715 * 120.56827 * 179.70740 * 17 16 15 19 19 O 1.21478 * 120.00175 * 359.97438 * 18 17 16 20 20 O 1.34709 * 120.00253 * 180.02562 * 18 17 16 21 21 C 1.45198 * 117.00007 * 180.02562 * 20 18 17 22 22 C 1.39577 * 118.86612 * 359.45907 * 17 16 15 23 23 N 1.31685 * 120.55964 * 0.55942 * 22 17 16 24 24 H 1.08995 * 109.47251 * 59.81031 * 1 2 3 25 25 H 1.08998 * 109.47235 * 179.80908 * 1 2 3 26 26 H 1.09004 * 109.47179 * 299.80643 * 1 2 3 27 27 H 1.09000 * 109.46871 * 239.99407 * 2 1 3 28 28 H 1.09000 * 109.47029 * 119.99707 * 2 1 3 29 29 H 1.09001 * 109.47059 * 53.04407 * 4 3 2 30 30 H 1.08995 * 109.47341 * 173.04406 * 4 3 2 31 31 H 0.97003 * 120.00177 * 180.02562 * 8 7 5 32 32 H 1.09006 * 109.47139 * 306.04369 * 13 3 2 33 33 H 1.09004 * 109.47136 * 186.05222 * 13 3 2 34 34 H 1.07996 * 120.34433 * 0.03931 * 15 14 13 35 35 H 1.08004 * 120.86091 * 180.02562 * 16 15 14 36 36 H 1.09004 * 109.47307 * 299.99631 * 21 20 18 37 37 H 1.09001 * 109.47695 * 59.99701 * 21 20 18 38 38 H 1.08999 * 109.46994 * 179.97438 * 21 20 18 39 39 H 1.07999 * 119.71912 * 180.26937 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5897 2.0953 -1.2118 5 6 2.2708 1.4947 -2.4145 6 1 3.0151 0.7230 -2.2843 7 6 1.9437 1.9304 -3.6811 8 7 1.0372 2.8698 -3.8397 9 14 2.7884 1.1863 -5.1719 10 1 3.7608 0.1559 -4.7270 11 1 1.7723 0.5590 -6.0547 12 1 3.5031 2.2521 -5.9191 13 6 1.5857 2.0968 1.2094 14 6 2.2455 1.4833 2.4175 15 6 3.4154 2.0358 2.9078 16 6 4.0188 1.4699 4.0166 17 6 3.4174 0.3467 4.5988 18 6 4.0222 -0.3016 5.7803 19 8 5.0502 0.1385 6.2550 20 8 3.4345 -1.3815 6.3308 21 6 4.0842 -1.9664 7.4901 22 6 2.2341 -0.1463 4.0467 23 7 1.6983 0.4280 2.9897 24 1 -0.3633 0.5167 -0.8882 25 1 -0.3633 -1.0276 -0.0034 26 1 -0.3634 0.5108 0.8917 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 0.5092 2.0036 -1.3226 30 1 1.8585 3.1485 -1.1303 31 1 0.8068 3.1760 -4.7308 32 1 0.5029 2.0189 1.3080 33 1 1.8690 3.1467 1.1345 34 1 3.8528 2.9000 2.4301 35 1 4.9322 1.8810 4.4205 36 1 5.0904 -2.2866 7.2198 37 1 4.1406 -1.2253 8.2875 38 1 3.5090 -2.8261 7.8337 39 1 1.7564 -1.0089 4.4872 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094761616.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:30:18 Heat of formation + Delta-G solvation = -41.057282 kcal Electronic energy + Delta-G solvation = -21156.245432 eV Core-core repulsion = 17871.420802 eV Total energy + Delta-G solvation = -3284.824630 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.93319 -39.83341 -37.13246 -36.64170 -32.96893 -32.48185 -32.03180 -29.47075 -28.48323 -27.28866 -25.30866 -23.88134 -23.24301 -22.66736 -21.11541 -19.39150 -18.28827 -17.41433 -16.60698 -16.33613 -16.21958 -15.60816 -15.18476 -14.87106 -14.62940 -14.16416 -13.79914 -13.61379 -13.25957 -13.10363 -12.73020 -12.71745 -12.41923 -11.93502 -11.66501 -11.44892 -11.15506 -11.08884 -10.92030 -10.87652 -10.68050 -10.57289 -10.08067 -9.92553 -9.80201 -9.44719 -9.24075 -9.04634 -8.44153 -7.24130 -6.03750 -4.04467 0.44070 1.21662 2.36176 2.41168 3.30618 3.38375 3.43347 3.72512 4.20974 4.43216 4.56422 4.71978 4.73206 4.81798 4.89289 4.95403 5.14044 5.21503 5.31891 5.35658 5.65721 5.71305 5.89452 5.93114 6.02395 6.07270 6.11646 6.20129 6.30217 6.52678 6.62261 6.74470 7.00879 7.27009 7.43306 7.46879 7.79152 7.91491 8.05664 8.16412 8.51183 9.03723 9.59721 11.06929 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.031888 B = 0.003371 C = 0.003339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.859072 B = 8305.172383 C = 8384.959125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.062 3.938 3 N -0.528 5.528 4 C 0.188 3.812 5 C -0.503 4.503 6 H 0.063 0.937 7 C 0.055 3.945 8 N -0.899 5.899 9 Si 0.896 3.104 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.284 1.284 13 C 0.087 3.913 14 C 0.191 3.809 15 C -0.165 4.165 16 C -0.011 4.011 17 C -0.199 4.199 18 C 0.519 3.481 19 O -0.509 6.509 20 O -0.355 6.355 21 C 0.037 3.963 22 C 0.161 3.839 23 N -0.483 5.483 24 H 0.064 0.936 25 H 0.045 0.955 26 H 0.050 0.950 27 H 0.077 0.923 28 H 0.057 0.943 29 H 0.007 0.993 30 H 0.026 0.974 31 H 0.260 0.740 32 H 0.055 0.945 33 H 0.087 0.913 34 H 0.148 0.852 35 H 0.146 0.854 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.103 0.897 39 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.524 -5.934 19.352 20.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.067 4.067 3 N -0.253 5.253 4 C 0.064 3.936 5 C -0.542 4.542 6 H 0.081 0.919 7 C -0.146 4.146 8 N -0.539 5.539 9 Si 0.724 3.276 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.211 1.211 13 C -0.042 4.042 14 C 0.055 3.945 15 C -0.185 4.185 16 C -0.037 4.037 17 C -0.203 4.203 18 C 0.363 3.637 19 O -0.398 6.398 20 O -0.271 6.271 21 C -0.056 4.056 22 C 0.002 3.998 23 N -0.192 5.192 24 H 0.082 0.918 25 H 0.064 0.936 26 H 0.069 0.931 27 H 0.096 0.904 28 H 0.076 0.924 29 H 0.025 0.975 30 H 0.044 0.956 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.105 0.895 34 H 0.166 0.834 35 H 0.163 0.837 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.121 0.879 39 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 2.492 -6.053 19.004 20.100 hybrid contribution 0.474 -0.046 -0.345 0.588 sum 2.966 -6.099 18.659 19.853 Atomic orbital electron populations 1.22296 0.99031 1.00976 1.01785 1.21976 0.92585 0.90774 1.01335 1.62449 1.59093 1.02363 1.01373 1.19830 0.95084 0.93635 0.85080 1.21157 1.21923 1.21173 0.89942 0.91873 1.24966 0.95300 0.95266 0.99032 1.69958 1.32102 1.29198 1.22596 0.86469 0.79386 0.79096 0.82648 1.19673 1.21144 1.21056 1.21154 0.97773 0.97607 0.87671 1.21805 0.90543 0.88823 0.93376 1.22007 0.96731 1.02963 0.96847 1.21676 0.98016 0.91380 0.92613 1.20035 1.00664 1.00986 0.98592 1.21020 0.81990 0.78020 0.82625 1.90830 1.23627 1.63345 1.62041 1.86542 1.53435 1.42618 1.44508 1.23289 0.98609 0.98282 0.85443 1.23173 0.90071 0.96755 0.89836 1.67734 1.33420 1.09298 1.08733 0.91754 0.93597 0.93121 0.90448 0.92417 0.97537 0.95602 0.92997 0.92755 0.89471 0.83432 0.83667 0.91760 0.91826 0.87866 0.81621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.37 9.26 37.16 0.34 -3.02 16 2 C 0.06 1.22 5.60 -3.82 -0.02 1.19 16 3 N -0.53 -10.99 4.69 -237.51 -1.11 -12.10 16 4 C 0.19 4.68 4.53 -4.97 -0.02 4.66 16 5 C -0.50 -13.78 8.39 -34.44 -0.29 -14.07 16 6 H 0.06 1.74 7.37 -52.49 -0.39 1.35 16 7 C 0.06 1.54 5.46 -17.82 -0.10 1.45 16 8 N -0.90 -26.13 13.29 55.43 0.74 -25.40 16 9 Si 0.90 21.42 29.54 -169.99 -5.02 16.40 16 10 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 13 C 0.09 1.49 5.06 -4.98 -0.03 1.46 16 14 C 0.19 2.91 5.70 -82.50 -0.47 2.44 16 15 C -0.17 -2.18 9.70 -39.50 -0.38 -2.56 16 16 C -0.01 -0.14 9.72 -38.86 -0.38 -0.52 16 17 C -0.20 -2.49 5.89 -104.84 -0.62 -3.11 16 18 C 0.52 6.40 7.91 34.60 0.27 6.68 16 19 O -0.51 -7.29 16.21 -19.25 -0.31 -7.60 16 20 O -0.35 -3.66 9.84 -40.52 -0.40 -4.06 16 21 C 0.04 0.27 10.56 101.05 1.07 1.33 16 22 C 0.16 2.03 10.79 -17.12 -0.18 1.84 16 23 N -0.48 -7.19 8.77 -9.12 -0.08 -7.27 16 24 H 0.06 1.35 6.29 -51.93 -0.33 1.02 16 25 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.05 0.89 6.33 -51.93 -0.33 0.56 16 27 H 0.08 1.67 6.97 -51.93 -0.36 1.31 16 28 H 0.06 1.07 6.23 -51.93 -0.32 0.75 16 29 H 0.01 0.18 6.02 -51.93 -0.31 -0.13 16 30 H 0.03 0.68 7.91 -51.93 -0.41 0.27 16 31 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 32 H 0.05 0.95 6.06 -51.93 -0.31 0.63 16 33 H 0.09 1.40 7.82 -51.93 -0.41 0.99 16 34 H 0.15 1.71 8.06 -52.49 -0.42 1.29 16 35 H 0.15 1.57 7.74 -52.48 -0.41 1.17 16 36 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.17 1.69 7.62 -52.49 -0.40 1.29 16 LS Contribution 327.51 15.07 4.94 4.94 Total: -1.00 -31.05 327.51 -7.28 -38.34 By element: Atomic # 1 Polarization: 4.20 SS G_CDS: -5.23 Total: -1.03 kcal Atomic # 6 Polarization: -1.42 SS G_CDS: -0.80 Total: -2.22 kcal Atomic # 7 Polarization: -44.31 SS G_CDS: -0.46 Total: -44.77 kcal Atomic # 8 Polarization: -10.95 SS G_CDS: -0.71 Total: -11.66 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -31.05 -7.28 -38.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094761616.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.721 kcal (2) G-P(sol) polarization free energy of solvation -31.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds