Wall clock time and date at job start Tue Mar 31 2020 00:30:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46902 * 109.47137 * 2 1 4 4 C 1.46900 * 110.99772 * 297.91975 * 3 2 1 5 5 C 1.50703 * 109.47197 * 293.04716 * 4 3 2 6 6 H 1.08002 * 119.99943 * 354.97230 * 5 4 3 7 7 C 1.37875 * 119.99782 * 174.97839 * 5 4 3 8 8 N 1.31507 * 120.00227 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 119.99778 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47258 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.46822 * 120.00170 * 9 7 5 12 12 H 1.48496 * 109.47327 * 240.00014 * 9 7 5 13 13 C 1.46893 * 111.00006 * 61.87570 * 3 2 1 14 14 C 1.50704 * 109.47422 * 66.04674 * 13 3 2 15 15 C 1.38359 * 119.45378 * 94.99970 * 14 13 3 16 16 C 1.38336 * 119.30768 * 180.02562 * 15 14 13 17 17 C 1.40078 * 118.28636 * 0.27021 * 16 15 14 18 18 C 1.47715 * 120.56827 * 179.70740 * 17 16 15 19 19 O 1.21478 * 120.00175 * 359.97438 * 18 17 16 20 20 O 1.34709 * 120.00253 * 180.02562 * 18 17 16 21 21 C 1.45198 * 117.00007 * 180.02562 * 20 18 17 22 22 C 1.39577 * 118.86612 * 359.45907 * 17 16 15 23 23 N 1.31685 * 120.55964 * 0.55942 * 22 17 16 24 24 H 1.08995 * 109.47251 * 59.81031 * 1 2 3 25 25 H 1.08998 * 109.47235 * 179.80908 * 1 2 3 26 26 H 1.09004 * 109.47179 * 299.80643 * 1 2 3 27 27 H 1.09000 * 109.46871 * 239.99407 * 2 1 3 28 28 H 1.09000 * 109.47029 * 119.99707 * 2 1 3 29 29 H 1.09001 * 109.47059 * 53.04407 * 4 3 2 30 30 H 1.08995 * 109.47341 * 173.04406 * 4 3 2 31 31 H 0.97003 * 120.00177 * 180.02562 * 8 7 5 32 32 H 1.09006 * 109.47139 * 306.04369 * 13 3 2 33 33 H 1.09004 * 109.47136 * 186.05222 * 13 3 2 34 34 H 1.07996 * 120.34433 * 0.03931 * 15 14 13 35 35 H 1.08004 * 120.86091 * 180.02562 * 16 15 14 36 36 H 1.09004 * 109.47307 * 299.99631 * 21 20 18 37 37 H 1.09001 * 109.47695 * 59.99701 * 21 20 18 38 38 H 1.08999 * 109.46994 * 179.97438 * 21 20 18 39 39 H 1.07999 * 119.71912 * 180.26937 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5897 2.0953 -1.2118 5 6 2.2708 1.4947 -2.4145 6 1 3.0151 0.7230 -2.2843 7 6 1.9437 1.9304 -3.6811 8 7 1.0372 2.8698 -3.8397 9 14 2.7884 1.1863 -5.1719 10 1 3.7608 0.1559 -4.7270 11 1 1.7723 0.5590 -6.0547 12 1 3.5031 2.2521 -5.9191 13 6 1.5857 2.0968 1.2094 14 6 2.2455 1.4833 2.4175 15 6 3.4154 2.0358 2.9078 16 6 4.0188 1.4699 4.0166 17 6 3.4174 0.3467 4.5988 18 6 4.0222 -0.3016 5.7803 19 8 5.0502 0.1385 6.2550 20 8 3.4345 -1.3815 6.3308 21 6 4.0842 -1.9664 7.4901 22 6 2.2341 -0.1463 4.0467 23 7 1.6983 0.4280 2.9897 24 1 -0.3633 0.5167 -0.8882 25 1 -0.3633 -1.0276 -0.0034 26 1 -0.3634 0.5108 0.8917 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 0.5092 2.0036 -1.3226 30 1 1.8585 3.1485 -1.1303 31 1 0.8068 3.1760 -4.7308 32 1 0.5029 2.0189 1.3080 33 1 1.8690 3.1467 1.1345 34 1 3.8528 2.9000 2.4301 35 1 4.9322 1.8810 4.4205 36 1 5.0904 -2.2866 7.2198 37 1 4.1406 -1.2253 8.2875 38 1 3.5090 -2.8261 7.8337 39 1 1.7564 -1.0089 4.4872 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000094761616.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:30:17 Heat of formation + Delta-G solvation = -60.631320 kcal Electronic energy + Delta-G solvation = -21157.094226 eV Core-core repulsion = 17871.420802 eV Total energy + Delta-G solvation = -3285.673424 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.91509 -40.85524 -38.68642 -37.56364 -34.81970 -33.68897 -33.25972 -31.02957 -29.78717 -28.43431 -26.80213 -25.14812 -24.67456 -24.02463 -22.16874 -20.98998 -19.22001 -18.37222 -18.33088 -17.44898 -17.32363 -16.88600 -16.73556 -16.52673 -15.87924 -15.51633 -14.90011 -14.73818 -14.54144 -14.21993 -14.11575 -14.04668 -13.62471 -13.10968 -13.08735 -13.03634 -12.83159 -12.62202 -12.51083 -12.39662 -11.88730 -11.85470 -11.83680 -11.49912 -11.27734 -10.98401 -10.58413 -10.50296 -10.16679 -8.94268 -8.16509 -6.24759 -0.59662 0.21730 1.37091 1.41814 1.43287 1.55903 1.59676 2.42207 2.65827 3.13281 3.16692 3.55552 3.62165 3.69754 3.78592 3.99528 4.21023 4.31510 4.33154 4.35746 4.41523 4.60289 4.65770 4.72399 4.73531 4.76726 4.95737 4.98313 5.05322 5.08690 5.23889 5.27915 5.40268 5.49310 5.56229 5.71028 6.09884 6.33782 6.56308 6.63070 6.86329 6.91508 7.44144 8.94057 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.031888 B = 0.003371 C = 0.003339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.859072 B = 8305.172383 C = 8384.959125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.067 3.933 3 N -0.535 5.535 4 C 0.204 3.796 5 C -0.516 4.516 6 H 0.057 0.943 7 C 0.005 3.995 8 N -0.932 5.932 9 Si 0.962 3.038 10 H -0.266 1.266 11 H -0.280 1.280 12 H -0.279 1.279 13 C 0.090 3.910 14 C 0.173 3.827 15 C -0.163 4.163 16 C -0.007 4.007 17 C -0.198 4.198 18 C 0.523 3.477 19 O -0.532 6.532 20 O -0.354 6.354 21 C 0.029 3.971 22 C 0.163 3.837 23 N -0.500 5.500 24 H 0.033 0.967 25 H 0.066 0.934 26 H 0.060 0.940 27 H 0.054 0.946 28 H 0.074 0.926 29 H -0.015 1.015 30 H 0.007 0.993 31 H 0.263 0.737 32 H 0.050 0.950 33 H 0.093 0.907 34 H 0.161 0.839 35 H 0.161 0.839 36 H 0.063 0.937 37 H 0.065 0.935 38 H 0.135 0.865 39 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.255 -7.236 20.623 22.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.062 4.062 3 N -0.259 5.259 4 C 0.078 3.922 5 C -0.555 4.555 6 H 0.075 0.925 7 C -0.193 4.193 8 N -0.573 5.573 9 Si 0.788 3.212 10 H -0.191 1.191 11 H -0.206 1.206 12 H -0.205 1.205 13 C -0.038 4.038 14 C 0.037 3.963 15 C -0.184 4.184 16 C -0.033 4.033 17 C -0.201 4.201 18 C 0.369 3.631 19 O -0.423 6.423 20 O -0.270 6.270 21 C -0.064 4.064 22 C 0.004 3.996 23 N -0.209 5.209 24 H 0.052 0.948 25 H 0.085 0.915 26 H 0.078 0.922 27 H 0.073 0.927 28 H 0.092 0.908 29 H 0.002 0.998 30 H 0.025 0.975 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.112 0.888 34 H 0.178 0.822 35 H 0.179 0.821 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.154 0.846 39 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 3.217 -7.373 20.299 21.835 hybrid contribution 0.254 0.303 -0.575 0.698 sum 3.472 -7.070 19.724 21.238 Atomic orbital electron populations 1.22157 0.98084 1.01952 1.00656 1.21910 0.93295 0.90067 1.00881 1.62297 1.59444 1.02799 1.01340 1.19469 0.93417 0.92796 0.86547 1.21432 1.21840 1.20993 0.91194 0.92451 1.25790 0.95905 0.95633 1.01980 1.70069 1.33406 1.30442 1.23388 0.85437 0.78421 0.78413 0.78969 1.19050 1.20621 1.20466 1.21113 0.97804 0.97886 0.87029 1.21486 0.91568 0.89903 0.93319 1.22101 0.95973 1.03248 0.97037 1.21867 0.98297 0.91124 0.92004 1.20179 1.00532 1.00855 0.98574 1.20941 0.81538 0.78275 0.82359 1.90823 1.24616 1.64149 1.62731 1.86532 1.53420 1.41660 1.45400 1.23628 0.99199 0.99229 0.84297 1.23494 0.90015 0.97008 0.89052 1.67654 1.34057 1.09507 1.09728 0.94827 0.91522 0.92154 0.92746 0.90792 0.99756 0.97524 0.92794 0.93184 0.88834 0.82182 0.82139 0.91810 0.91600 0.84649 0.79269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.26 9.26 71.98 0.67 -5.60 16 2 C 0.07 2.63 5.60 86.30 0.48 3.11 16 3 N -0.53 -22.49 4.69 -905.35 -4.24 -26.73 16 4 C 0.20 10.44 4.53 85.56 0.39 10.83 16 5 C -0.52 -28.77 8.39 25.60 0.21 -28.56 16 6 H 0.06 3.20 7.37 -2.91 -0.02 3.18 16 7 C 0.00 0.28 5.46 84.66 0.46 0.74 16 8 N -0.93 -55.14 13.29 21.45 0.28 -54.86 16 9 Si 0.96 44.14 29.54 68.60 2.03 46.16 16 10 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 11 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 12 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 13 C 0.09 3.09 5.06 85.56 0.43 3.52 16 14 C 0.17 5.11 5.70 42.57 0.24 5.35 16 15 C -0.16 -4.08 9.70 22.32 0.22 -3.86 16 16 C -0.01 -0.17 9.72 22.74 0.22 0.05 16 17 C -0.20 -4.54 5.89 -20.00 -0.12 -4.66 16 18 C 0.52 11.83 7.91 70.33 0.56 12.39 16 19 O -0.53 -14.30 16.21 19.91 0.32 -13.98 16 20 O -0.35 -6.41 9.84 -56.19 -0.55 -6.97 16 21 C 0.03 0.34 10.56 113.37 1.20 1.54 16 22 C 0.16 3.76 10.79 85.04 0.92 4.68 16 23 N -0.50 -14.12 8.77 -182.77 -1.60 -15.72 16 24 H 0.03 1.43 6.29 -2.39 -0.02 1.42 16 25 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 26 H 0.06 2.09 6.33 -2.38 -0.02 2.07 16 27 H 0.05 2.37 6.97 -2.39 -0.02 2.36 16 28 H 0.07 2.68 6.23 -2.39 -0.01 2.67 16 29 H -0.02 -0.84 6.02 -2.39 -0.01 -0.86 16 30 H 0.01 0.36 7.91 -2.39 -0.02 0.34 16 31 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 32 H 0.05 1.75 6.06 -2.38 -0.01 1.74 16 33 H 0.09 3.02 7.82 -2.38 -0.02 3.00 16 34 H 0.16 3.50 8.06 -2.91 -0.02 3.47 16 35 H 0.16 3.13 7.74 -2.91 -0.02 3.11 16 36 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.14 0.68 8.14 -2.39 -0.02 0.66 16 39 H 0.19 3.32 7.62 -2.91 -0.02 3.30 16 Total: -1.00 -66.56 327.51 3.17 -63.39 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: 1.05 Total: 9.18 kcal Atomic # 6 Polarization: -6.36 SS G_CDS: 5.88 Total: -0.48 kcal Atomic # 7 Polarization: -91.75 SS G_CDS: -5.56 Total: -97.31 kcal Atomic # 8 Polarization: -20.72 SS G_CDS: -0.23 Total: -20.95 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.16 kcal Total: -66.56 3.17 -63.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094761616.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.760 kcal (2) G-P(sol) polarization free energy of solvation -66.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds