Wall clock time and date at job start Tue Mar 31 2020 00:31:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46497 * 109.46811 * 2 1 4 4 C 1.46506 * 120.00096 * 90.55319 * 3 2 1 5 5 C 1.50693 * 109.46942 * 89.99632 * 4 3 2 6 6 H 1.08003 * 120.00566 * 359.97438 * 5 4 3 7 7 C 1.37882 * 119.99731 * 179.97438 * 5 4 3 8 8 N 1.31513 * 120.00264 * 0.02562 * 7 5 4 9 9 Si 1.86808 * 119.99954 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.46975 * 60.00148 * 9 7 5 11 11 H 1.48498 * 109.46848 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47220 * 300.00444 * 9 7 5 13 13 C 1.34774 * 119.99959 * 270.55025 * 3 2 1 14 14 O 1.21678 * 119.99972 * 185.22138 * 13 3 2 15 15 C 1.46849 * 120.00131 * 5.22006 * 13 3 2 16 16 C 1.36238 * 125.80023 * 8.67669 * 15 13 3 17 17 C 1.41570 * 106.98435 * 179.85280 * 16 15 13 18 18 C 1.46607 * 126.51839 * 180.19208 * 17 16 15 19 19 C 1.50707 * 120.00127 * 180.27846 * 18 17 16 20 20 O 1.21326 * 120.00255 * 0.27515 * 18 17 16 21 21 C 1.38626 * 106.96257 * 0.40195 * 17 16 15 22 22 N 1.34110 * 108.34638 * 359.75167 * 21 17 16 23 23 C 1.46498 * 125.34334 * 179.97438 * 22 21 17 24 24 H 1.08996 * 109.47287 * 292.79025 * 1 2 3 25 25 H 1.08995 * 109.47255 * 52.79137 * 1 2 3 26 26 H 1.08998 * 109.47002 * 172.78795 * 1 2 3 27 27 H 1.09000 * 109.46722 * 239.99806 * 2 1 3 28 28 H 1.09000 * 109.46765 * 119.99847 * 2 1 3 29 29 H 1.08998 * 109.46839 * 209.99615 * 4 3 2 30 30 H 1.09001 * 109.46614 * 329.99589 * 4 3 2 31 31 H 0.96993 * 120.00277 * 180.02562 * 8 7 5 32 32 H 1.08000 * 126.50822 * 359.96957 * 16 15 13 33 33 H 1.08996 * 109.46878 * 59.99290 * 19 18 17 34 34 H 1.09000 * 109.47081 * 180.02562 * 19 18 17 35 35 H 1.09003 * 109.46725 * 300.00001 * 19 18 17 36 36 H 1.07998 * 125.82572 * 179.73107 * 21 17 16 37 37 H 1.09000 * 109.47081 * 264.29258 * 23 22 21 38 38 H 1.09003 * 109.47377 * 24.29593 * 23 22 21 39 39 H 1.09004 * 109.46519 * 144.29476 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2740 2.0678 1.2687 5 6 3.7011 1.8296 1.6900 6 1 4.3525 1.2268 1.0746 7 6 4.1754 2.3814 2.8612 8 7 3.3822 3.1151 3.6109 9 14 5.9443 2.0856 3.3839 10 1 6.8627 2.6111 2.3421 11 1 6.2034 2.7816 4.6698 12 1 6.1727 0.6283 3.5555 13 6 2.2323 2.0203 -1.1671 14 8 2.7270 3.1320 -1.1702 15 6 1.8686 1.3750 -2.4351 16 6 1.1626 0.2172 -2.5663 17 6 1.0378 -0.0362 -3.9535 18 6 0.3509 -1.1728 -4.5745 19 6 0.3129 -1.3017 -6.0756 20 8 -0.1870 -2.0096 -3.8800 21 6 1.6929 0.9923 -4.6130 22 7 2.1884 1.8346 -3.6945 23 6 2.9505 3.0517 -3.9845 24 1 -0.3634 0.3981 0.9474 25 1 -0.3633 0.6214 -0.8184 26 1 -0.3633 -1.0195 -0.1290 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 2.1059 3.1374 1.1433 30 1 1.6001 1.6812 2.0332 31 1 3.7159 3.5035 4.4347 32 1 0.7707 -0.3908 -1.7643 33 1 1.3306 -1.3667 -6.4605 34 1 -0.2377 -2.2018 -6.3491 35 1 -0.1820 -0.4295 -6.5027 36 1 1.7882 1.0971 -5.6836 37 1 4.0171 2.8338 -3.9315 38 1 2.7014 3.4069 -4.9844 39 1 2.6998 3.8201 -3.2530 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103207982.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:31:37 Heat of formation + Delta-G solvation = -1.322092 kcal Electronic energy + Delta-G solvation = -21953.977800 eV Core-core repulsion = 18670.876218 eV Total energy + Delta-G solvation = -3283.101583 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = -0.61 seconds Orbital eigenvalues (eV) -41.61172 -38.89381 -38.36651 -35.72137 -33.15313 -32.60450 -31.02201 -30.24899 -28.90606 -26.89797 -26.65750 -23.37879 -23.04014 -22.45123 -20.85783 -19.56535 -18.12810 -16.95643 -16.43696 -15.90025 -15.57806 -15.33158 -14.99421 -14.68533 -14.65862 -14.39319 -14.21035 -13.99050 -13.14202 -12.81274 -12.53021 -12.45155 -12.30248 -12.24819 -12.00493 -11.96350 -11.64365 -11.39435 -11.17410 -10.92115 -10.69373 -10.44982 -10.11554 -9.73919 -9.67257 -9.11592 -8.71596 -8.43905 -8.23190 -7.69281 -6.04969 -4.09595 1.39623 1.85158 2.70643 3.23895 3.32105 3.35945 3.39130 3.86014 3.94811 4.29205 4.44649 4.73994 4.75540 5.01094 5.05980 5.19840 5.27955 5.29219 5.29696 5.39837 5.42796 5.64570 5.66009 5.79085 5.84807 5.90748 6.13707 6.24394 6.30684 6.58107 6.64801 6.88629 7.02559 7.15418 7.39491 7.50657 7.72521 7.90929 8.21356 8.34666 8.85492 9.01257 9.55104 11.03103 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.024001 B = 0.004703 C = 0.004297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.360384 B = 5952.818584 C = 6514.039294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.084 3.916 3 N -0.578 5.578 4 C 0.249 3.751 5 C -0.526 4.526 6 H 0.057 0.943 7 C 0.062 3.938 8 N -0.895 5.895 9 Si 0.899 3.101 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 C 0.572 3.428 14 O -0.548 6.548 15 C -0.040 4.040 16 C -0.118 4.118 17 C -0.275 4.275 18 C 0.424 3.576 19 C -0.197 4.197 20 O -0.475 6.475 21 C 0.066 3.934 22 N -0.396 5.396 23 C 0.061 3.939 24 H 0.063 0.937 25 H 0.061 0.939 26 H 0.066 0.934 27 H 0.086 0.914 28 H 0.085 0.915 29 H 0.043 0.957 30 H 0.036 0.964 31 H 0.264 0.736 32 H 0.184 0.816 33 H 0.088 0.912 34 H 0.080 0.920 35 H 0.088 0.912 36 H 0.177 0.823 37 H 0.080 0.920 38 H 0.083 0.917 39 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.942 -5.382 -18.358 19.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.040 4.040 3 N -0.308 5.308 4 C 0.131 3.869 5 C -0.565 4.565 6 H 0.075 0.925 7 C -0.140 4.140 8 N -0.534 5.534 9 Si 0.726 3.274 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.359 3.641 14 O -0.428 6.428 15 C -0.152 4.152 16 C -0.142 4.142 17 C -0.283 4.283 18 C 0.303 3.697 19 C -0.254 4.254 20 O -0.351 6.351 21 C -0.076 4.076 22 N -0.067 5.067 23 C -0.080 4.080 24 H 0.082 0.918 25 H 0.080 0.920 26 H 0.085 0.915 27 H 0.104 0.896 28 H 0.103 0.897 29 H 0.061 0.939 30 H 0.054 0.946 31 H 0.074 0.926 32 H 0.201 0.799 33 H 0.107 0.893 34 H 0.099 0.901 35 H 0.107 0.893 36 H 0.194 0.806 37 H 0.098 0.902 38 H 0.101 0.899 39 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -4.753 -4.778 -17.776 19.011 hybrid contribution 1.109 0.001 0.196 1.126 sum -3.644 -4.778 -17.580 18.578 Atomic orbital electron populations 1.22392 0.96475 1.02068 1.02874 1.22103 0.93777 0.84208 1.03901 1.47974 1.62650 1.13179 1.06952 1.19335 0.96456 0.93541 0.77607 1.21381 0.96637 1.32114 1.06342 0.92458 1.24922 0.97903 0.94904 0.96282 1.69917 1.35779 1.33537 1.14179 0.86553 0.84767 0.78320 0.77743 1.20248 1.21164 1.20206 1.16952 0.79451 0.85330 0.82351 1.90739 1.45048 1.20103 1.86929 1.20277 1.09736 0.99145 0.86000 1.22624 0.99205 0.95622 0.96709 1.20271 1.12637 1.00919 0.94501 1.21501 0.75121 0.82260 0.90796 1.22219 1.04198 1.04315 0.94663 1.90534 1.37972 1.40090 1.66543 1.22477 0.98939 0.91236 0.94986 1.43681 1.38487 1.19305 1.05240 1.22408 0.96538 0.85667 1.03367 0.91756 0.92007 0.91464 0.89593 0.89690 0.93851 0.94569 0.92642 0.79939 0.89295 0.90144 0.89319 0.80603 0.90152 0.89851 0.87186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.71 8.57 37.16 0.32 -2.39 16 2 C 0.08 1.46 5.58 -4.04 -0.02 1.44 16 3 N -0.58 -12.62 2.46 -176.54 -0.43 -13.05 16 4 C 0.25 6.53 5.12 -5.19 -0.03 6.50 16 5 C -0.53 -14.95 9.39 -34.44 -0.32 -15.28 16 6 H 0.06 1.64 7.81 -52.48 -0.41 1.23 16 7 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 8 N -0.90 -26.52 13.29 55.43 0.74 -25.78 16 9 Si 0.90 21.90 29.54 -169.99 -5.02 16.88 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 13 C 0.57 12.36 7.62 -12.78 -0.10 12.27 16 14 O -0.55 -13.46 14.32 5.21 0.07 -13.39 16 15 C -0.04 -0.70 6.66 -82.40 -0.55 -1.25 16 16 C -0.12 -1.86 7.26 -39.03 -0.28 -2.15 16 17 C -0.28 -3.64 6.12 -105.11 -0.64 -4.28 16 18 C 0.42 5.20 7.24 -30.93 -0.22 4.97 16 19 C -0.20 -1.45 9.76 36.01 0.35 -1.10 16 20 O -0.47 -7.54 17.65 5.52 0.10 -7.44 16 21 C 0.07 0.72 10.89 -16.41 -0.18 0.54 16 22 N -0.40 -5.50 3.12 -120.05 -0.37 -5.87 16 23 C 0.06 0.70 10.48 59.85 0.63 1.33 16 24 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 25 H 0.06 0.95 6.60 -51.93 -0.34 0.61 16 26 H 0.07 0.86 8.13 -51.93 -0.42 0.43 16 27 H 0.09 1.40 4.82 -51.93 -0.25 1.15 16 28 H 0.08 1.50 8.07 -51.93 -0.42 1.08 16 29 H 0.04 1.27 7.50 -51.93 -0.39 0.88 16 30 H 0.04 0.95 8.07 -51.93 -0.42 0.54 16 31 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 32 H 0.18 2.83 3.06 -52.49 -0.16 2.67 16 33 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.08 0.59 8.12 -51.93 -0.42 0.16 16 35 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.18 1.07 8.00 -52.49 -0.42 0.65 16 37 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.08 0.61 8.11 -51.93 -0.42 0.19 16 39 H 0.11 1.57 6.41 -51.93 -0.33 1.24 16 LS Contribution 327.38 15.07 4.93 4.93 Total: -1.00 -34.96 327.38 -6.37 -41.33 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: -5.23 Total: 0.10 kcal Atomic # 6 Polarization: 3.44 SS G_CDS: -1.15 Total: 2.29 kcal Atomic # 7 Polarization: -44.63 SS G_CDS: -0.07 Total: -44.70 kcal Atomic # 8 Polarization: -21.00 SS G_CDS: 0.17 Total: -20.83 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -34.96 -6.37 -41.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103207982.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.004 kcal (2) G-P(sol) polarization free energy of solvation -34.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.60 seconds