Wall clock time and date at job start Tue Mar 31 2020 00:31:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46497 * 109.46811 * 2 1 4 4 C 1.46506 * 120.00096 * 90.55319 * 3 2 1 5 5 C 1.50693 * 109.46942 * 89.99632 * 4 3 2 6 6 H 1.08003 * 120.00566 * 359.97438 * 5 4 3 7 7 C 1.37882 * 119.99731 * 179.97438 * 5 4 3 8 8 N 1.31513 * 120.00264 * 0.02562 * 7 5 4 9 9 Si 1.86808 * 119.99954 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.46975 * 60.00148 * 9 7 5 11 11 H 1.48498 * 109.46848 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47220 * 300.00444 * 9 7 5 13 13 C 1.34774 * 119.99959 * 270.55025 * 3 2 1 14 14 O 1.21678 * 119.99972 * 185.22138 * 13 3 2 15 15 C 1.46849 * 120.00131 * 5.22006 * 13 3 2 16 16 C 1.36238 * 125.80023 * 8.67669 * 15 13 3 17 17 C 1.41570 * 106.98435 * 179.85280 * 16 15 13 18 18 C 1.46607 * 126.51839 * 180.19208 * 17 16 15 19 19 C 1.50707 * 120.00127 * 180.27846 * 18 17 16 20 20 O 1.21326 * 120.00255 * 0.27515 * 18 17 16 21 21 C 1.38626 * 106.96257 * 0.40195 * 17 16 15 22 22 N 1.34110 * 108.34638 * 359.75167 * 21 17 16 23 23 C 1.46498 * 125.34334 * 179.97438 * 22 21 17 24 24 H 1.08996 * 109.47287 * 292.79025 * 1 2 3 25 25 H 1.08995 * 109.47255 * 52.79137 * 1 2 3 26 26 H 1.08998 * 109.47002 * 172.78795 * 1 2 3 27 27 H 1.09000 * 109.46722 * 239.99806 * 2 1 3 28 28 H 1.09000 * 109.46765 * 119.99847 * 2 1 3 29 29 H 1.08998 * 109.46839 * 209.99615 * 4 3 2 30 30 H 1.09001 * 109.46614 * 329.99589 * 4 3 2 31 31 H 0.96993 * 120.00277 * 180.02562 * 8 7 5 32 32 H 1.08000 * 126.50822 * 359.96957 * 16 15 13 33 33 H 1.08996 * 109.46878 * 59.99290 * 19 18 17 34 34 H 1.09000 * 109.47081 * 180.02562 * 19 18 17 35 35 H 1.09003 * 109.46725 * 300.00001 * 19 18 17 36 36 H 1.07998 * 125.82572 * 179.73107 * 21 17 16 37 37 H 1.09000 * 109.47081 * 264.29258 * 23 22 21 38 38 H 1.09003 * 109.47377 * 24.29593 * 23 22 21 39 39 H 1.09004 * 109.46519 * 144.29476 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2740 2.0678 1.2687 5 6 3.7011 1.8296 1.6900 6 1 4.3525 1.2268 1.0746 7 6 4.1754 2.3814 2.8612 8 7 3.3822 3.1151 3.6109 9 14 5.9443 2.0856 3.3839 10 1 6.8627 2.6111 2.3421 11 1 6.2034 2.7816 4.6698 12 1 6.1727 0.6283 3.5555 13 6 2.2323 2.0203 -1.1671 14 8 2.7270 3.1320 -1.1702 15 6 1.8686 1.3750 -2.4351 16 6 1.1626 0.2172 -2.5663 17 6 1.0378 -0.0362 -3.9535 18 6 0.3509 -1.1728 -4.5745 19 6 0.3129 -1.3017 -6.0756 20 8 -0.1870 -2.0096 -3.8800 21 6 1.6929 0.9923 -4.6130 22 7 2.1884 1.8346 -3.6945 23 6 2.9505 3.0517 -3.9845 24 1 -0.3634 0.3981 0.9474 25 1 -0.3633 0.6214 -0.8184 26 1 -0.3633 -1.0195 -0.1290 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 2.1059 3.1374 1.1433 30 1 1.6001 1.6812 2.0332 31 1 3.7159 3.5035 4.4347 32 1 0.7707 -0.3908 -1.7643 33 1 1.3306 -1.3667 -6.4605 34 1 -0.2377 -2.2018 -6.3491 35 1 -0.1820 -0.4295 -6.5027 36 1 1.7882 1.0971 -5.6836 37 1 4.0171 2.8338 -3.9315 38 1 2.7014 3.4069 -4.9844 39 1 2.6998 3.8201 -3.2530 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103207982.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:31:33 Heat of formation + Delta-G solvation = -24.460636 kcal Electronic energy + Delta-G solvation = -21954.981163 eV Core-core repulsion = 18670.876218 eV Total energy + Delta-G solvation = -3284.104945 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 2.57 seconds Orbital eigenvalues (eV) -42.75824 -40.29938 -39.55798 -37.36117 -35.12747 -33.84283 -32.36906 -31.48270 -30.08289 -28.70476 -27.60605 -25.28524 -24.51833 -23.43956 -22.25052 -20.84311 -19.29960 -18.66978 -18.16015 -17.36942 -16.96389 -16.72674 -16.21591 -15.94139 -15.70695 -15.65480 -15.53824 -15.42045 -14.68956 -14.29235 -13.91871 -13.67330 -13.37828 -13.34671 -13.24740 -13.10778 -12.94863 -12.79020 -12.75471 -12.64082 -12.41381 -12.22952 -11.86911 -11.77242 -10.88216 -10.66438 -10.59027 -9.84436 -9.62396 -9.25913 -8.24605 -6.39662 0.50004 0.54744 1.35191 1.38954 1.46631 1.61775 2.18997 2.31031 2.45389 2.46099 3.04612 3.38212 3.63528 3.85271 3.98825 4.09479 4.23573 4.29016 4.37908 4.40008 4.50976 4.65157 4.69766 4.78398 4.84058 4.86313 4.95536 4.98073 5.07015 5.15068 5.29507 5.41779 5.51468 5.58886 5.71712 5.80022 6.02058 6.18684 6.62294 6.69096 6.84714 7.20976 7.36267 8.82428 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.024001 B = 0.004703 C = 0.004297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.360384 B = 5952.818584 C = 6514.039294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.083 3.917 3 N -0.588 5.588 4 C 0.266 3.734 5 C -0.545 4.545 6 H 0.050 0.950 7 C 0.011 3.989 8 N -0.927 5.927 9 Si 0.968 3.032 10 H -0.277 1.277 11 H -0.276 1.276 12 H -0.262 1.262 13 C 0.563 3.437 14 O -0.593 6.593 15 C -0.082 4.082 16 C -0.115 4.115 17 C -0.300 4.300 18 C 0.424 3.576 19 C -0.188 4.188 20 O -0.523 6.523 21 C 0.116 3.884 22 N -0.402 5.402 23 C 0.060 3.940 24 H 0.054 0.946 25 H 0.057 0.943 26 H 0.095 0.905 27 H 0.101 0.899 28 H 0.078 0.922 29 H 0.001 0.999 30 H 0.027 0.973 31 H 0.268 0.732 32 H 0.178 0.822 33 H 0.117 0.883 34 H 0.079 0.921 35 H 0.117 0.883 36 H 0.241 0.759 37 H 0.079 0.921 38 H 0.138 0.862 39 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.404 -6.631 -21.774 23.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.039 4.039 3 N -0.317 5.317 4 C 0.146 3.854 5 C -0.583 4.583 6 H 0.068 0.932 7 C -0.189 4.189 8 N -0.566 5.566 9 Si 0.792 3.208 10 H -0.202 1.202 11 H -0.200 1.200 12 H -0.187 1.187 13 C 0.354 3.646 14 O -0.477 6.477 15 C -0.192 4.192 16 C -0.139 4.139 17 C -0.307 4.307 18 C 0.307 3.693 19 C -0.244 4.244 20 O -0.403 6.403 21 C -0.027 4.027 22 N -0.073 5.073 23 C -0.080 4.080 24 H 0.074 0.926 25 H 0.076 0.924 26 H 0.114 0.886 27 H 0.119 0.881 28 H 0.097 0.903 29 H 0.019 0.981 30 H 0.045 0.955 31 H 0.077 0.923 32 H 0.194 0.806 33 H 0.135 0.865 34 H 0.098 0.902 35 H 0.136 0.864 36 H 0.257 0.743 37 H 0.098 0.902 38 H 0.156 0.844 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -4.229 -6.050 -21.204 22.452 hybrid contribution 0.893 0.397 1.156 1.514 sum -3.336 -5.652 -20.048 21.095 Atomic orbital electron populations 1.22281 0.94455 1.03654 1.02170 1.22311 0.95379 0.81922 1.04252 1.47934 1.63243 1.14626 1.05902 1.18782 0.95575 0.91519 0.79562 1.21617 0.97523 1.32426 1.06737 0.93187 1.25837 1.02537 0.94344 0.96141 1.70034 1.37866 1.34130 1.14589 0.85462 0.78895 0.78966 0.77449 1.20242 1.20044 1.18693 1.17590 0.78405 0.84920 0.83708 1.90696 1.47170 1.22018 1.87808 1.19618 1.13300 1.00587 0.85743 1.22685 0.98026 0.94649 0.98566 1.20567 1.14061 1.02629 0.93394 1.22183 0.73346 0.80739 0.93040 1.22233 1.06305 1.05656 0.90236 1.90528 1.40104 1.41602 1.68097 1.23424 0.94221 0.88184 0.96899 1.43905 1.38723 1.20277 1.04371 1.22521 0.96332 0.84057 1.05117 0.92650 0.92436 0.88604 0.88114 0.90336 0.98070 0.95523 0.92271 0.80562 0.86473 0.90216 0.86432 0.74307 0.90205 0.84412 0.90863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.16 8.57 71.98 0.62 -4.54 16 2 C 0.08 3.04 5.58 86.38 0.48 3.52 16 3 N -0.59 -27.27 2.46 -830.67 -2.04 -29.31 16 4 C 0.27 14.94 5.12 85.63 0.44 15.38 16 5 C -0.54 -32.35 9.39 25.60 0.24 -32.11 16 6 H 0.05 2.97 7.81 -2.91 -0.02 2.95 16 7 C 0.01 0.62 5.46 84.66 0.46 1.09 16 8 N -0.93 -56.67 13.29 21.45 0.28 -56.38 16 9 Si 0.97 45.59 29.54 68.60 2.03 47.62 16 10 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 11 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 12 H -0.26 -11.69 7.11 99.48 0.71 -10.99 16 13 C 0.56 25.74 7.62 86.50 0.66 26.40 16 14 O -0.59 -31.23 14.32 -4.28 -0.06 -31.29 16 15 C -0.08 -2.87 6.66 39.99 0.27 -2.61 16 16 C -0.12 -3.55 7.26 22.63 0.16 -3.38 16 17 C -0.30 -7.01 6.12 -20.18 -0.12 -7.14 16 18 C 0.42 9.09 7.24 27.87 0.20 9.29 16 19 C -0.19 -1.79 9.76 71.24 0.70 -1.09 16 20 O -0.52 -15.93 17.65 -3.17 -0.06 -15.99 16 21 C 0.12 1.96 10.89 84.44 0.92 2.88 16 22 N -0.40 -10.26 3.12 -533.71 -1.67 -11.93 16 23 C 0.06 1.27 10.48 127.77 1.34 2.61 16 24 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 25 H 0.06 1.82 6.60 -2.39 -0.02 1.80 16 26 H 0.10 2.39 8.13 -2.39 -0.02 2.37 16 27 H 0.10 3.37 4.82 -2.39 -0.01 3.35 16 28 H 0.08 2.91 8.07 -2.39 -0.02 2.89 16 29 H 0.00 0.08 7.50 -2.39 -0.02 0.06 16 30 H 0.03 1.51 8.07 -2.39 -0.02 1.49 16 31 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 32 H 0.18 5.47 3.06 -2.91 -0.01 5.47 16 33 H 0.12 0.52 8.14 -2.39 -0.02 0.50 16 34 H 0.08 0.84 8.12 -2.39 -0.02 0.82 16 35 H 0.12 0.51 8.14 -2.39 -0.02 0.49 16 36 H 0.24 0.89 8.00 -2.91 -0.02 0.86 16 37 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.14 1.36 8.11 -2.39 -0.02 1.34 16 39 H 0.07 2.15 6.41 -2.38 -0.02 2.14 16 Total: -1.00 -83.32 327.38 5.91 -77.41 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: 1.06 Total: 9.58 kcal Atomic # 6 Polarization: 3.93 SS G_CDS: 6.36 Total: 10.29 kcal Atomic # 7 Polarization: -94.20 SS G_CDS: -3.42 Total: -97.62 kcal Atomic # 8 Polarization: -47.17 SS G_CDS: -0.12 Total: -47.28 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.62 kcal Total: -83.32 5.91 -77.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103207982.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.949 kcal (2) G-P(sol) polarization free energy of solvation -83.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.57 seconds