Wall clock time and date at job start Tue Mar 31 2020 00:31:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42903 * 109.47262 * 2 1 4 4 C 1.35502 * 117.00015 * 180.02562 * 3 2 1 5 5 C 1.39163 * 119.52807 * 179.97438 * 4 3 2 6 6 C 1.37952 * 119.26549 * 180.02562 * 5 4 3 7 7 C 1.40284 * 118.35887 * 359.97438 * 6 5 4 8 8 C 1.47613 * 120.50041 * 180.02562 * 7 6 5 9 9 O 1.21582 * 119.99602 * 314.57753 * 8 7 6 10 10 N 1.34776 * 120.00263 * 134.57530 * 8 7 6 11 11 C 1.46503 * 119.99587 * 5.70625 * 10 8 7 12 12 C 1.53001 * 109.46971 * 97.51180 * 11 10 8 13 13 C 1.46497 * 120.00240 * 185.70354 * 10 8 7 14 14 C 1.50692 * 109.47072 * 89.99975 * 13 10 8 15 15 H 1.08003 * 120.00239 * 0.02562 * 14 13 10 16 16 C 1.37882 * 119.99848 * 179.97438 * 14 13 10 17 17 N 1.31513 * 119.99980 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99909 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47540 * 89.99863 * 18 16 14 20 20 H 1.48497 * 109.46848 * 210.00132 * 18 16 14 21 21 H 1.48506 * 109.46775 * 329.99678 * 18 16 14 22 22 C 1.39524 * 119.00106 * 0.02562 * 7 6 5 23 23 N 1.31666 * 120.62895 * 359.97438 * 22 7 6 24 24 H 1.08991 * 109.47497 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47078 * 300.00478 * 1 2 3 26 26 H 1.09002 * 109.46837 * 60.00093 * 1 2 3 27 27 H 1.09000 * 109.47078 * 239.99522 * 2 1 3 28 28 H 1.09002 * 109.46837 * 119.99907 * 2 1 3 29 29 H 1.08007 * 120.36323 * 0.02562 * 5 4 3 30 30 H 1.08002 * 120.81818 * 179.97438 * 6 5 4 31 31 H 1.09004 * 109.47077 * 217.51092 * 11 10 8 32 32 H 1.09001 * 109.47444 * 337.50866 * 11 10 8 33 33 H 1.09008 * 109.46721 * 189.15790 * 12 11 10 34 34 H 1.08999 * 109.47088 * 309.15940 * 12 11 10 35 35 H 1.08994 * 109.47307 * 69.16452 * 12 11 10 36 36 H 1.09001 * 109.46925 * 210.00047 * 13 10 8 37 37 H 1.08997 * 109.46964 * 330.00217 * 13 10 8 38 38 H 0.97002 * 119.99429 * 179.97438 * 17 16 14 39 39 H 1.08001 * 119.68531 * 179.97438 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3497 1.5248 -0.0005 5 6 3.8710 2.8151 -0.0011 6 6 5.2395 2.9895 -0.0022 7 6 6.0566 1.8492 -0.0021 8 6 7.5268 1.9811 -0.0027 9 8 8.0660 2.7712 -0.7532 10 7 8.2715 1.2256 0.8287 11 6 7.6349 0.1867 1.6422 12 6 7.7893 -1.1690 0.9500 13 6 9.7174 1.4432 0.9188 14 6 10.0063 2.4609 1.9920 15 1 9.1940 2.9013 2.5513 16 6 11.3076 2.8291 2.2606 17 7 12.2966 2.2926 1.5798 18 14 11.6657 4.0901 3.5914 19 1 11.8556 3.3977 4.8913 20 1 12.9002 4.8389 3.2444 21 1 10.5259 5.0363 3.6963 22 6 5.4587 0.5886 -0.0015 23 7 4.1475 0.4680 -0.0005 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.2115 3.6704 -0.0007 30 1 5.6711 3.9796 -0.0031 31 1 8.1105 0.1505 2.6224 32 1 6.5759 0.4158 1.7605 33 1 7.1811 -1.9119 1.4664 34 1 7.4612 -1.0874 -0.0862 35 1 8.8354 -1.4737 0.9770 36 1 10.2115 0.5037 1.1665 37 1 10.0902 1.8086 -0.0381 38 1 13.2121 2.5519 1.7686 39 1 6.0772 -0.2967 -0.0019 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103209501.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:31:41 Heat of formation + Delta-G solvation = -32.013356 kcal Electronic energy + Delta-G solvation = -21490.059187 eV Core-core repulsion = 18205.626731 eV Total energy + Delta-G solvation = -3284.432456 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.83777 -39.20204 -37.62057 -35.49098 -32.95082 -32.52378 -32.15730 -30.48393 -29.95637 -27.15548 -24.51436 -24.08359 -23.10280 -22.68090 -22.01968 -19.00595 -18.63415 -17.18910 -16.80246 -16.43131 -16.40631 -15.36922 -15.00556 -14.68285 -14.35146 -13.99242 -13.92328 -13.61507 -13.34335 -12.98831 -12.77469 -12.57009 -12.50487 -12.12627 -12.02099 -11.79243 -11.61561 -11.22555 -11.00107 -10.91263 -10.74169 -10.55876 -10.18215 -9.92255 -9.83192 -9.66814 -9.04590 -8.47692 -8.42303 -7.73015 -6.06912 -4.11950 0.94886 1.21207 2.86856 3.27271 3.29004 3.35799 3.40203 3.71572 3.97265 4.20987 4.42504 4.77322 4.79519 4.84849 4.89639 5.05580 5.09532 5.19677 5.27771 5.28350 5.46265 5.52166 5.57784 5.60887 5.71093 5.75177 5.85087 5.98354 6.18155 6.21018 6.32667 6.46771 7.03047 7.12749 7.41393 7.48642 7.73041 7.89392 8.20016 8.32912 8.84067 9.00119 9.53252 11.01171 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.028899 B = 0.003925 C = 0.003752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.645203 B = 7132.000475 C = 7461.022603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.065 3.935 3 O -0.307 6.307 4 C 0.327 3.673 5 C -0.195 4.195 6 C 0.005 3.995 7 C -0.204 4.204 8 C 0.555 3.445 9 O -0.535 6.535 10 N -0.588 5.588 11 C 0.096 3.904 12 C -0.176 4.176 13 C 0.246 3.754 14 C -0.529 4.529 15 H 0.058 0.942 16 C 0.062 3.938 17 N -0.894 5.894 18 Si 0.898 3.102 19 H -0.280 1.280 20 H -0.285 1.285 21 H -0.274 1.274 22 C 0.154 3.846 23 N -0.543 5.543 24 H 0.078 0.922 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.066 0.934 28 H 0.067 0.933 29 H 0.145 0.855 30 H 0.149 0.851 31 H 0.084 0.916 32 H 0.070 0.930 33 H 0.064 0.936 34 H 0.056 0.944 35 H 0.068 0.932 36 H 0.035 0.965 37 H 0.047 0.953 38 H 0.264 0.736 39 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.643 -6.471 -1.270 20.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.010 4.010 3 O -0.214 6.214 4 C 0.148 3.852 5 C -0.216 4.216 6 C -0.021 4.021 7 C -0.210 4.210 8 C 0.341 3.659 9 O -0.412 6.412 10 N -0.319 5.319 11 C -0.028 4.028 12 C -0.234 4.234 13 C 0.127 3.873 14 C -0.568 4.568 15 H 0.076 0.924 16 C -0.140 4.140 17 N -0.532 5.532 18 Si 0.726 3.274 19 H -0.206 1.206 20 H -0.211 1.211 21 H -0.199 1.199 22 C -0.002 4.002 23 N -0.267 5.267 24 H 0.097 0.903 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.163 0.837 30 H 0.167 0.833 31 H 0.102 0.898 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.075 0.925 35 H 0.087 0.913 36 H 0.053 0.947 37 H 0.065 0.935 38 H 0.073 0.927 39 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -19.734 -6.696 -1.674 20.907 hybrid contribution 0.710 1.226 0.832 1.642 sum -19.025 -5.471 -0.842 19.813 Atomic orbital electron populations 1.21821 0.93132 1.02835 1.03251 1.22610 0.94597 0.81125 1.02687 1.86184 1.17023 1.30706 1.87525 1.19973 0.83879 0.90132 0.91189 1.20969 0.95478 0.95705 1.09432 1.21478 0.91522 0.99310 0.89763 1.21116 0.96179 0.95006 1.08663 1.17850 0.85141 0.81599 0.81310 1.90770 1.72982 1.37272 1.40216 1.48195 1.10832 1.33337 1.39505 1.21657 0.98012 0.87234 0.95909 1.22359 1.03274 0.97355 1.00377 1.19325 0.72459 0.96941 0.98591 1.21435 0.92417 1.24014 1.18952 0.92410 1.24932 0.96016 0.96482 0.96601 1.69932 0.99441 1.43279 1.40587 0.86493 0.77888 0.81430 0.81593 1.20622 1.21061 1.19875 1.23318 0.89108 0.97292 0.90470 1.67363 1.06310 1.32704 1.20323 0.90341 0.91685 0.91706 0.91544 0.91489 0.83745 0.83285 0.89809 0.91195 0.91663 0.92479 0.91305 0.94698 0.93541 0.92665 0.80712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 10.28 37.16 0.38 -0.66 16 2 C 0.07 0.62 6.02 37.16 0.22 0.85 16 3 O -0.31 -3.75 10.10 -18.20 -0.18 -3.94 16 4 C 0.33 4.47 7.49 -16.96 -0.13 4.34 16 5 C -0.20 -2.55 10.02 -39.34 -0.39 -2.94 16 6 C 0.01 0.08 9.84 -38.92 -0.38 -0.31 16 7 C -0.20 -3.45 5.09 -104.82 -0.53 -3.99 16 8 C 0.56 11.82 7.29 -12.44 -0.09 11.73 16 9 O -0.53 -13.59 16.55 5.29 0.09 -13.50 16 10 N -0.59 -12.38 2.46 -176.26 -0.43 -12.81 16 11 C 0.10 1.55 5.60 -4.04 -0.02 1.53 16 12 C -0.18 -2.32 9.15 37.16 0.34 -1.98 16 13 C 0.25 6.32 5.22 -5.20 -0.03 6.30 16 14 C -0.53 -14.83 9.39 -34.44 -0.32 -15.16 16 15 H 0.06 1.62 7.81 -52.48 -0.41 1.21 16 16 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 17 N -0.89 -26.29 13.29 55.43 0.74 -25.55 16 18 Si 0.90 21.66 29.54 -169.99 -5.02 16.64 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 21 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 22 C 0.15 2.27 8.59 -17.14 -0.15 2.12 16 23 N -0.54 -7.69 9.18 -12.96 -0.12 -7.81 16 24 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.07 0.64 8.10 -51.93 -0.42 0.22 16 28 H 0.07 0.64 8.10 -51.93 -0.42 0.22 16 29 H 0.14 1.51 8.06 -52.48 -0.42 1.09 16 30 H 0.15 2.15 8.06 -52.49 -0.42 1.72 16 31 H 0.08 1.39 8.13 -51.93 -0.42 0.97 16 32 H 0.07 1.02 5.09 -51.93 -0.26 0.76 16 33 H 0.06 0.68 8.14 -51.92 -0.42 0.25 16 34 H 0.06 0.73 6.33 -51.93 -0.33 0.41 16 35 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.04 0.90 8.07 -51.93 -0.42 0.48 16 37 H 0.05 1.35 7.35 -51.93 -0.38 0.97 16 38 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 39 H 0.18 2.33 3.70 -52.49 -0.19 2.14 16 LS Contribution 329.70 15.07 4.97 4.97 Total: -1.00 -32.80 329.70 -6.52 -39.32 By element: Atomic # 1 Polarization: 4.56 SS G_CDS: -5.36 Total: -0.80 kcal Atomic # 6 Polarization: 4.69 SS G_CDS: -1.20 Total: 3.49 kcal Atomic # 7 Polarization: -46.36 SS G_CDS: 0.18 Total: -46.18 kcal Atomic # 8 Polarization: -17.34 SS G_CDS: -0.10 Total: -17.44 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -32.80 -6.52 -39.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103209501.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.305 kcal (2) G-P(sol) polarization free energy of solvation -32.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds