Wall clock time and date at job start Tue Mar 31 2020 00:31:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42903 * 109.47262 * 2 1 4 4 C 1.35502 * 117.00015 * 180.02562 * 3 2 1 5 5 C 1.39163 * 119.52807 * 179.97438 * 4 3 2 6 6 C 1.37952 * 119.26549 * 180.02562 * 5 4 3 7 7 C 1.40284 * 118.35887 * 359.97438 * 6 5 4 8 8 C 1.47613 * 120.50041 * 180.02562 * 7 6 5 9 9 O 1.21582 * 119.99602 * 314.57753 * 8 7 6 10 10 N 1.34776 * 120.00263 * 134.57530 * 8 7 6 11 11 C 1.46503 * 119.99587 * 5.70625 * 10 8 7 12 12 C 1.53001 * 109.46971 * 97.51180 * 11 10 8 13 13 C 1.46497 * 120.00240 * 185.70354 * 10 8 7 14 14 C 1.50692 * 109.47072 * 89.99975 * 13 10 8 15 15 H 1.08003 * 120.00239 * 0.02562 * 14 13 10 16 16 C 1.37882 * 119.99848 * 179.97438 * 14 13 10 17 17 N 1.31513 * 119.99980 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99909 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47540 * 89.99863 * 18 16 14 20 20 H 1.48497 * 109.46848 * 210.00132 * 18 16 14 21 21 H 1.48506 * 109.46775 * 329.99678 * 18 16 14 22 22 C 1.39524 * 119.00106 * 0.02562 * 7 6 5 23 23 N 1.31666 * 120.62895 * 359.97438 * 22 7 6 24 24 H 1.08991 * 109.47497 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47078 * 300.00478 * 1 2 3 26 26 H 1.09002 * 109.46837 * 60.00093 * 1 2 3 27 27 H 1.09000 * 109.47078 * 239.99522 * 2 1 3 28 28 H 1.09002 * 109.46837 * 119.99907 * 2 1 3 29 29 H 1.08007 * 120.36323 * 0.02562 * 5 4 3 30 30 H 1.08002 * 120.81818 * 179.97438 * 6 5 4 31 31 H 1.09004 * 109.47077 * 217.51092 * 11 10 8 32 32 H 1.09001 * 109.47444 * 337.50866 * 11 10 8 33 33 H 1.09008 * 109.46721 * 189.15790 * 12 11 10 34 34 H 1.08999 * 109.47088 * 309.15940 * 12 11 10 35 35 H 1.08994 * 109.47307 * 69.16452 * 12 11 10 36 36 H 1.09001 * 109.46925 * 210.00047 * 13 10 8 37 37 H 1.08997 * 109.46964 * 330.00217 * 13 10 8 38 38 H 0.97002 * 119.99429 * 179.97438 * 17 16 14 39 39 H 1.08001 * 119.68531 * 179.97438 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3497 1.5248 -0.0005 5 6 3.8710 2.8151 -0.0011 6 6 5.2395 2.9895 -0.0022 7 6 6.0566 1.8492 -0.0021 8 6 7.5268 1.9811 -0.0027 9 8 8.0660 2.7712 -0.7532 10 7 8.2715 1.2256 0.8287 11 6 7.6349 0.1867 1.6422 12 6 7.7893 -1.1690 0.9500 13 6 9.7174 1.4432 0.9188 14 6 10.0063 2.4609 1.9920 15 1 9.1940 2.9013 2.5513 16 6 11.3076 2.8291 2.2606 17 7 12.2966 2.2926 1.5798 18 14 11.6657 4.0901 3.5914 19 1 11.8556 3.3977 4.8913 20 1 12.9002 4.8389 3.2444 21 1 10.5259 5.0363 3.6963 22 6 5.4587 0.5886 -0.0015 23 7 4.1475 0.4680 -0.0005 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.2115 3.6704 -0.0007 30 1 5.6711 3.9796 -0.0031 31 1 8.1105 0.1505 2.6224 32 1 6.5759 0.4158 1.7605 33 1 7.1811 -1.9119 1.4664 34 1 7.4612 -1.0874 -0.0862 35 1 8.8354 -1.4737 0.9770 36 1 10.2115 0.5037 1.1665 37 1 10.0902 1.8086 -0.0381 38 1 13.2121 2.5519 1.7686 39 1 6.0772 -0.2967 -0.0019 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103209501.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:31:40 Heat of formation + Delta-G solvation = -54.476435 kcal Electronic energy + Delta-G solvation = -21491.033259 eV Core-core repulsion = 18205.626731 eV Total energy + Delta-G solvation = -3285.406528 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.03112 -40.60900 -38.79999 -37.15537 -34.97778 -33.67592 -33.08659 -31.91443 -31.12880 -29.04749 -25.84419 -25.29528 -24.63815 -23.94054 -23.11780 -20.55611 -19.63987 -18.67848 -18.45670 -18.09704 -17.34516 -17.05958 -16.34093 -16.14427 -16.02705 -15.06470 -14.98982 -14.90881 -14.59366 -14.31411 -14.25126 -13.74375 -13.53507 -13.35253 -13.28852 -13.23846 -13.08683 -12.66677 -12.50333 -12.46154 -12.19659 -12.02363 -11.73464 -11.66369 -11.15546 -11.06509 -10.64196 -10.58091 -9.63267 -9.48170 -8.23137 -6.37952 -0.24843 0.07933 1.37225 1.39969 1.50157 1.73797 1.92486 2.21591 2.41034 2.65181 3.06773 3.12992 3.49998 3.73532 3.96990 3.99371 4.04812 4.12640 4.22614 4.31792 4.46887 4.50406 4.57092 4.66645 4.85766 4.87345 4.92535 4.98902 5.01414 5.08267 5.20730 5.22613 5.28098 5.37546 5.54606 5.80586 6.04758 6.12762 6.60190 6.63350 6.71819 7.21614 7.37358 8.84226 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.028899 B = 0.003925 C = 0.003752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.645203 B = 7132.000475 C = 7461.022603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.057 3.943 3 O -0.308 6.308 4 C 0.329 3.671 5 C -0.185 4.185 6 C 0.000 4.000 7 C -0.226 4.226 8 C 0.552 3.448 9 O -0.590 6.590 10 N -0.592 5.592 11 C 0.092 3.908 12 C -0.169 4.169 13 C 0.261 3.739 14 C -0.547 4.547 15 H 0.053 0.947 16 C 0.010 3.990 17 N -0.927 5.927 18 Si 0.968 3.032 19 H -0.264 1.264 20 H -0.281 1.281 21 H -0.272 1.272 22 C 0.166 3.834 23 N -0.542 5.542 24 H 0.099 0.901 25 H 0.066 0.934 26 H 0.065 0.935 27 H 0.066 0.934 28 H 0.068 0.932 29 H 0.174 0.826 30 H 0.149 0.851 31 H 0.077 0.923 32 H 0.091 0.909 33 H 0.104 0.896 34 H 0.060 0.940 35 H 0.054 0.946 36 H 0.030 0.970 37 H 0.002 0.998 38 H 0.268 0.732 39 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.231 -7.055 -0.039 23.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.018 4.018 3 O -0.215 6.215 4 C 0.150 3.850 5 C -0.205 4.205 6 C -0.025 4.025 7 C -0.232 4.232 8 C 0.340 3.660 9 O -0.472 6.472 10 N -0.321 5.321 11 C -0.030 4.030 12 C -0.226 4.226 13 C 0.141 3.859 14 C -0.585 4.585 15 H 0.072 0.928 16 C -0.189 4.189 17 N -0.566 5.566 18 Si 0.792 3.208 19 H -0.188 1.188 20 H -0.206 1.206 21 H -0.197 1.197 22 C 0.010 3.990 23 N -0.266 5.266 24 H 0.118 0.882 25 H 0.085 0.915 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.086 0.914 29 H 0.192 0.808 30 H 0.166 0.834 31 H 0.096 0.904 32 H 0.109 0.891 33 H 0.122 0.878 34 H 0.079 0.921 35 H 0.073 0.927 36 H 0.048 0.952 37 H 0.020 0.980 38 H 0.077 0.923 39 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -22.373 -7.324 -0.418 23.545 hybrid contribution 1.382 1.351 0.414 1.976 sum -20.991 -5.974 -0.004 21.825 Atomic orbital electron populations 1.21837 0.90901 1.04307 1.03404 1.22898 0.96353 0.79796 1.02715 1.86212 1.15900 1.32471 1.86887 1.20238 0.84579 0.90262 0.89921 1.21179 0.94718 0.96660 1.07938 1.21557 0.92376 0.98820 0.89792 1.20763 0.93228 0.96895 1.12265 1.18490 0.87007 0.80353 0.80131 1.90723 1.74491 1.39587 1.42410 1.48188 1.09227 1.34588 1.40127 1.21946 0.98572 0.87316 0.95214 1.22309 1.03279 0.96248 1.00797 1.18790 0.75496 0.95953 0.95702 1.21702 0.92677 1.24703 1.19445 0.92845 1.25841 0.95758 0.98432 0.98913 1.70049 0.99917 1.44584 1.42062 0.85411 0.77585 0.78723 0.79069 1.18849 1.20605 1.19714 1.23384 0.89458 0.96657 0.89522 1.67444 1.05733 1.32901 1.20566 0.88223 0.91493 0.91573 0.91606 0.91364 0.80847 0.83376 0.90414 0.89115 0.87783 0.92087 0.92676 0.95250 0.98010 0.92329 0.79493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 10.28 71.98 0.74 -0.81 16 2 C 0.06 0.93 6.02 71.98 0.43 1.37 16 3 O -0.31 -6.64 10.10 -88.03 -0.89 -7.53 16 4 C 0.33 8.15 7.49 84.83 0.64 8.79 16 5 C -0.18 -4.40 10.02 22.42 0.22 -4.17 16 6 C 0.00 0.00 9.84 22.70 0.22 0.23 16 7 C -0.23 -7.59 5.09 -20.00 -0.10 -7.69 16 8 C 0.55 24.32 7.29 86.72 0.63 24.95 16 9 O -0.59 -31.72 16.55 -3.98 -0.07 -31.79 16 10 N -0.59 -25.69 2.46 -829.84 -2.04 -27.74 16 11 C 0.09 2.91 5.60 86.38 0.48 3.40 16 12 C -0.17 -4.20 9.15 71.98 0.66 -3.55 16 13 C 0.26 14.14 5.22 85.63 0.45 14.59 16 14 C -0.55 -31.55 9.39 25.60 0.24 -31.31 16 15 H 0.05 3.05 7.81 -2.91 -0.02 3.03 16 16 C 0.01 0.56 5.46 84.66 0.46 1.03 16 17 N -0.93 -55.85 13.29 21.45 0.28 -55.57 16 18 Si 0.97 44.73 29.54 68.60 2.03 46.76 16 19 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 20 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 21 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 22 C 0.17 4.63 8.59 85.03 0.73 5.36 16 23 N -0.54 -14.06 9.18 -307.81 -2.82 -16.89 16 24 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 25 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 26 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.07 1.10 8.10 -2.39 -0.02 1.08 16 28 H 0.07 1.11 8.10 -2.39 -0.02 1.09 16 29 H 0.17 3.07 8.06 -2.91 -0.02 3.04 16 30 H 0.15 4.29 8.06 -2.91 -0.02 4.27 16 31 H 0.08 2.56 8.13 -2.39 -0.02 2.54 16 32 H 0.09 2.52 5.09 -2.39 -0.01 2.50 16 33 H 0.10 1.81 8.14 -2.38 -0.02 1.79 16 34 H 0.06 1.48 6.33 -2.39 -0.02 1.47 16 35 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.03 1.59 8.07 -2.39 -0.02 1.58 16 37 H 0.00 0.11 7.35 -2.39 -0.02 0.09 16 38 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 39 H 0.19 4.64 3.70 -2.91 -0.01 4.63 16 Total: -1.00 -73.41 329.70 3.35 -70.06 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: 1.05 Total: 10.52 kcal Atomic # 6 Polarization: 6.36 SS G_CDS: 5.81 Total: 12.17 kcal Atomic # 7 Polarization: -95.61 SS G_CDS: -4.58 Total: -100.19 kcal Atomic # 8 Polarization: -38.36 SS G_CDS: -0.96 Total: -39.32 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -73.41 3.35 -70.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103209501.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.582 kcal (2) G-P(sol) polarization free energy of solvation -73.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds