Wall clock time and date at job start Tue Mar 31 2020 01:00:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42896 * 109.47139 * 2 1 4 4 C 1.42894 * 114.00303 * 179.97438 * 3 2 1 5 5 C 1.50698 * 109.47621 * 180.02562 * 4 3 2 6 6 O 1.21287 * 119.99499 * 359.97438 * 5 4 3 7 7 N 1.34777 * 120.00377 * 180.02562 * 5 4 3 8 8 C 1.46497 * 119.99928 * 359.97438 * 7 5 4 9 9 C 1.50698 * 109.46886 * 270.00390 * 8 7 5 10 10 H 1.07994 * 120.00600 * 359.97438 * 9 8 7 11 11 C 1.37880 * 119.99702 * 179.97438 * 9 8 7 12 12 N 1.31515 * 120.00037 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 120.00030 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.46873 * 90.00281 * 13 11 9 15 15 H 1.48504 * 109.47057 * 210.00010 * 13 11 9 16 16 H 1.48496 * 109.47551 * 330.00287 * 13 11 9 17 17 C 1.46504 * 119.99689 * 179.97438 * 7 5 4 18 18 C 1.50707 * 109.46935 * 90.00167 * 17 7 5 19 19 C 1.38227 * 119.62059 * 95.01845 * 18 17 7 20 20 C 1.38627 * 119.15702 * 179.74122 * 19 18 17 21 21 C 1.38669 * 118.42389 * 0.47826 * 20 19 18 22 22 C 1.38186 * 119.16143 * 359.49762 * 21 20 19 23 23 N 1.31856 * 119.61137 * 274.99275 * 18 17 7 24 24 H 1.08992 * 109.47080 * 299.99713 * 1 2 3 25 25 H 1.09004 * 109.47091 * 60.00048 * 1 2 3 26 26 H 1.09006 * 109.46841 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47355 * 240.00319 * 2 1 3 28 28 H 1.09004 * 109.47091 * 119.99952 * 2 1 3 29 29 H 1.08996 * 109.47174 * 59.99989 * 4 3 2 30 30 H 1.09001 * 109.47199 * 299.99909 * 4 3 2 31 31 H 1.08998 * 109.47243 * 30.00215 * 8 7 5 32 32 H 1.08997 * 109.46980 * 150.00484 * 8 7 5 33 33 H 0.97000 * 120.00213 * 179.97438 * 12 11 9 34 34 H 1.08997 * 109.47679 * 329.99634 * 17 7 5 35 35 H 1.09003 * 109.46652 * 209.99594 * 17 7 5 36 36 H 1.07998 * 120.41916 * 359.95342 * 19 18 17 37 37 H 1.08008 * 120.78688 * 180.22921 * 20 19 18 38 38 H 1.08002 * 120.42244 * 179.78279 * 21 20 19 39 39 H 1.07996 * 119.61757 * 180.25243 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4308 1.4601 0.0006 5 6 3.8195 2.9161 0.0012 6 8 2.9609 3.7729 0.0006 7 7 5.1210 3.2663 0.0013 8 6 6.1579 2.2315 0.0013 9 6 6.5133 1.8766 1.4222 10 1 6.0168 2.3726 2.2430 11 6 7.4724 0.9187 1.6742 12 7 8.0774 0.3150 0.6746 13 14 7.9134 0.4793 3.4354 14 1 7.0408 -0.6277 3.9027 15 1 9.3337 0.0500 3.4977 16 1 7.7164 1.6661 4.3060 17 6 5.4986 4.6818 0.0012 18 6 5.6280 5.1672 1.4221 19 6 6.8688 5.1744 2.0313 20 6 6.9777 5.6279 3.3367 21 6 5.8278 6.0497 3.9870 22 6 4.6218 6.0141 3.3134 23 7 4.5563 5.5805 2.0696 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.8340 0.9765 -0.8891 30 1 3.8333 0.9768 0.8908 31 1 5.7865 1.3449 -0.5125 32 1 7.0438 2.6048 -0.5123 33 1 8.7524 -0.3586 0.8519 34 1 4.7325 5.2624 -0.5127 35 1 6.4523 4.8034 -0.5125 36 1 7.7428 4.8343 1.4958 37 1 7.9348 5.6484 3.8368 38 1 5.8749 6.4058 5.0055 39 1 3.7223 6.3447 3.8115 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103439802.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:00:12 Heat of formation + Delta-G solvation = -45.994731 kcal Electronic energy + Delta-G solvation = -22012.202125 eV Core-core repulsion = 18727.163391 eV Total energy + Delta-G solvation = -3285.038734 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.86032 -38.85830 -37.14023 -35.02004 -32.83995 -31.97714 -31.50047 -31.02135 -28.01465 -27.26090 -25.20103 -23.13279 -22.80072 -22.52505 -21.63180 -18.57578 -16.85979 -16.68351 -16.29769 -16.11809 -15.81533 -15.44326 -15.17604 -14.98260 -14.48549 -14.08391 -13.59100 -13.19803 -12.96022 -12.76355 -12.43889 -12.33095 -12.21029 -12.02652 -11.70197 -11.41558 -11.32114 -11.04217 -11.01214 -10.92368 -10.76411 -10.22752 -9.82294 -9.40424 -9.26328 -8.96382 -8.92479 -8.66056 -8.44605 -7.75454 -6.24428 -4.30885 1.53769 1.77696 3.16674 3.24690 3.27734 3.41487 3.55675 4.24466 4.27426 4.62620 4.78514 5.08646 5.18967 5.22107 5.23336 5.34339 5.46486 5.49132 5.59109 5.64395 5.75820 5.82433 5.88117 5.98154 6.01143 6.10233 6.19525 6.24260 6.25094 6.56961 6.63230 6.67752 7.06319 7.15681 7.39957 7.58372 7.71320 7.99487 8.28548 8.54384 8.76121 9.07318 9.37410 10.82045 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.011070 B = 0.007676 C = 0.005436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2528.786024 B = 3646.908137 C = 5149.872244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.056 3.944 3 O -0.371 6.371 4 C 0.051 3.949 5 C 0.520 3.480 6 O -0.533 6.533 7 N -0.594 5.594 8 C 0.235 3.765 9 C -0.532 4.532 10 H 0.060 0.940 11 C 0.067 3.933 12 N -0.891 5.891 13 Si 0.890 3.110 14 H -0.279 1.279 15 H -0.285 1.285 16 H -0.273 1.273 17 C 0.174 3.826 18 C 0.123 3.877 19 C -0.132 4.132 20 C -0.085 4.085 21 C -0.181 4.181 22 C 0.087 3.913 23 N -0.460 5.460 24 H 0.062 0.938 25 H 0.061 0.939 26 H 0.067 0.933 27 H 0.047 0.953 28 H 0.048 0.952 29 H 0.074 0.926 30 H 0.089 0.911 31 H 0.038 0.962 32 H 0.039 0.961 33 H 0.265 0.735 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.136 0.864 37 H 0.127 0.873 38 H 0.125 0.875 39 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.671 3.863 1.133 5.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.021 4.021 3 O -0.290 6.290 4 C -0.028 4.028 5 C 0.307 3.693 6 O -0.410 6.410 7 N -0.328 5.328 8 C 0.115 3.885 9 C -0.570 4.570 10 H 0.078 0.922 11 C -0.136 4.136 12 N -0.529 5.529 13 Si 0.718 3.282 14 H -0.205 1.205 15 H -0.210 1.210 16 H -0.198 1.198 17 C 0.049 3.951 18 C -0.016 4.016 19 C -0.153 4.153 20 C -0.111 4.111 21 C -0.202 4.202 22 C -0.070 4.070 23 N -0.169 5.169 24 H 0.081 0.919 25 H 0.080 0.920 26 H 0.086 0.914 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.092 0.908 30 H 0.107 0.893 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.075 0.925 34 H 0.107 0.893 35 H 0.107 0.893 36 H 0.154 0.846 37 H 0.145 0.855 38 H 0.143 0.857 39 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -4.916 4.302 0.631 6.563 hybrid contribution 1.629 -0.844 1.740 2.528 sum -3.287 3.459 2.371 5.328 Atomic orbital electron populations 1.21710 0.93994 1.01701 1.03114 1.22457 0.95330 0.84216 1.00131 1.87937 1.19987 1.25543 1.95512 1.22242 0.81864 0.95582 1.03152 1.20024 0.82607 0.90075 0.76622 1.90659 1.49338 1.51680 1.49328 1.48083 1.06323 1.06291 1.72072 1.19511 0.85854 0.85505 0.97628 1.21471 1.21707 1.21625 0.92238 0.92205 1.24897 0.95757 0.95755 0.97166 1.69912 1.26144 1.26173 1.30687 0.86607 0.77734 0.78966 0.84931 1.20538 1.21028 1.19777 1.20088 1.01465 0.82979 0.90531 1.21661 0.88465 0.93890 0.97571 1.21984 0.99271 0.98305 0.95703 1.21493 0.98625 0.96258 0.94687 1.22031 0.94242 1.02986 1.00910 1.22649 0.97014 0.96442 0.90930 1.67580 1.31835 1.08706 1.08807 0.91914 0.91961 0.91412 0.93516 0.93371 0.90805 0.89343 0.94405 0.94321 0.92521 0.89283 0.89336 0.84574 0.85475 0.85673 0.83594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 10.28 37.16 0.38 -1.44 16 2 C 0.06 0.83 6.66 37.16 0.25 1.08 16 3 O -0.37 -7.28 9.87 -55.14 -0.54 -7.82 16 4 C 0.05 1.02 4.97 36.00 0.18 1.20 16 5 C 0.52 11.60 7.75 -10.99 -0.09 11.52 16 6 O -0.53 -13.24 16.08 -14.36 -0.23 -13.48 16 7 N -0.59 -12.59 2.44 -176.43 -0.43 -13.02 16 8 C 0.23 5.31 5.01 -5.20 -0.03 5.29 16 9 C -0.53 -13.22 9.13 -34.44 -0.31 -13.54 16 10 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 11 C 0.07 1.71 5.46 -17.82 -0.10 1.61 16 12 N -0.89 -23.52 13.29 55.43 0.74 -22.78 16 13 Si 0.89 20.18 29.54 -169.99 -5.02 15.16 16 14 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 15 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 16 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 17 C 0.17 3.29 5.76 -5.19 -0.03 3.26 16 18 C 0.12 2.39 6.36 -82.58 -0.53 1.86 16 19 C -0.13 -2.33 9.58 -39.44 -0.38 -2.71 16 20 C -0.08 -1.33 10.18 -39.28 -0.40 -1.73 16 21 C -0.18 -2.71 10.11 -39.44 -0.40 -3.11 16 22 C 0.09 1.47 11.18 -17.55 -0.20 1.27 16 23 N -0.46 -9.25 10.27 -9.47 -0.10 -9.34 16 24 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 25 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.07 1.35 7.40 -51.93 -0.38 0.96 16 30 H 0.09 1.83 8.00 -51.93 -0.42 1.41 16 31 H 0.04 0.88 6.44 -51.93 -0.33 0.55 16 32 H 0.04 0.89 7.89 -51.93 -0.41 0.48 16 33 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 34 H 0.09 1.71 7.42 -51.93 -0.39 1.32 16 35 H 0.09 1.44 7.79 -51.93 -0.40 1.03 16 36 H 0.14 2.29 8.06 -52.49 -0.42 1.87 16 37 H 0.13 1.66 8.06 -52.48 -0.42 1.24 16 38 H 0.13 1.46 8.06 -52.49 -0.42 1.03 16 39 H 0.15 2.04 8.06 -52.49 -0.42 1.62 16 LS Contribution 339.26 15.07 5.11 5.11 Total: -1.00 -31.10 339.26 -7.80 -38.90 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: -5.68 Total: 2.72 kcal Atomic # 6 Polarization: 6.20 SS G_CDS: -1.64 Total: 4.55 kcal Atomic # 7 Polarization: -45.36 SS G_CDS: 0.21 Total: -45.15 kcal Atomic # 8 Polarization: -20.52 SS G_CDS: -0.78 Total: -21.30 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.16 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.10 -7.80 -38.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103439802.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.090 kcal (2) G-P(sol) polarization free energy of solvation -31.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds