Wall clock time and date at job start Tue Mar 31 2020 01:00:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42896 * 109.47139 * 2 1 4 4 C 1.42894 * 114.00303 * 179.97438 * 3 2 1 5 5 C 1.50698 * 109.47621 * 180.02562 * 4 3 2 6 6 O 1.21287 * 119.99499 * 359.97438 * 5 4 3 7 7 N 1.34777 * 120.00377 * 180.02562 * 5 4 3 8 8 C 1.46497 * 119.99928 * 359.97438 * 7 5 4 9 9 C 1.50698 * 109.46886 * 270.00390 * 8 7 5 10 10 H 1.07994 * 120.00600 * 359.97438 * 9 8 7 11 11 C 1.37880 * 119.99702 * 179.97438 * 9 8 7 12 12 N 1.31515 * 120.00037 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 120.00030 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.46873 * 90.00281 * 13 11 9 15 15 H 1.48504 * 109.47057 * 210.00010 * 13 11 9 16 16 H 1.48496 * 109.47551 * 330.00287 * 13 11 9 17 17 C 1.46504 * 119.99689 * 179.97438 * 7 5 4 18 18 C 1.50707 * 109.46935 * 90.00167 * 17 7 5 19 19 C 1.38227 * 119.62059 * 95.01845 * 18 17 7 20 20 C 1.38627 * 119.15702 * 179.74122 * 19 18 17 21 21 C 1.38669 * 118.42389 * 0.47826 * 20 19 18 22 22 C 1.38186 * 119.16143 * 359.49762 * 21 20 19 23 23 N 1.31856 * 119.61137 * 274.99275 * 18 17 7 24 24 H 1.08992 * 109.47080 * 299.99713 * 1 2 3 25 25 H 1.09004 * 109.47091 * 60.00048 * 1 2 3 26 26 H 1.09006 * 109.46841 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47355 * 240.00319 * 2 1 3 28 28 H 1.09004 * 109.47091 * 119.99952 * 2 1 3 29 29 H 1.08996 * 109.47174 * 59.99989 * 4 3 2 30 30 H 1.09001 * 109.47199 * 299.99909 * 4 3 2 31 31 H 1.08998 * 109.47243 * 30.00215 * 8 7 5 32 32 H 1.08997 * 109.46980 * 150.00484 * 8 7 5 33 33 H 0.97000 * 120.00213 * 179.97438 * 12 11 9 34 34 H 1.08997 * 109.47679 * 329.99634 * 17 7 5 35 35 H 1.09003 * 109.46652 * 209.99594 * 17 7 5 36 36 H 1.07998 * 120.41916 * 359.95342 * 19 18 17 37 37 H 1.08008 * 120.78688 * 180.22921 * 20 19 18 38 38 H 1.08002 * 120.42244 * 179.78279 * 21 20 19 39 39 H 1.07996 * 119.61757 * 180.25243 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4308 1.4601 0.0006 5 6 3.8195 2.9161 0.0012 6 8 2.9609 3.7729 0.0006 7 7 5.1210 3.2663 0.0013 8 6 6.1579 2.2315 0.0013 9 6 6.5133 1.8766 1.4222 10 1 6.0168 2.3726 2.2430 11 6 7.4724 0.9187 1.6742 12 7 8.0774 0.3150 0.6746 13 14 7.9134 0.4793 3.4354 14 1 7.0408 -0.6277 3.9027 15 1 9.3337 0.0500 3.4977 16 1 7.7164 1.6661 4.3060 17 6 5.4986 4.6818 0.0012 18 6 5.6280 5.1672 1.4221 19 6 6.8688 5.1744 2.0313 20 6 6.9777 5.6279 3.3367 21 6 5.8278 6.0497 3.9870 22 6 4.6218 6.0141 3.3134 23 7 4.5563 5.5805 2.0696 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.8340 0.9765 -0.8891 30 1 3.8333 0.9768 0.8908 31 1 5.7865 1.3449 -0.5125 32 1 7.0438 2.6048 -0.5123 33 1 8.7524 -0.3586 0.8519 34 1 4.7325 5.2624 -0.5127 35 1 6.4523 4.8034 -0.5125 36 1 7.7428 4.8343 1.4958 37 1 7.9348 5.6484 3.8368 38 1 5.8749 6.4058 5.0055 39 1 3.7223 6.3447 3.8115 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103439802.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:00:11 Heat of formation + Delta-G solvation = -64.041768 kcal Electronic energy + Delta-G solvation = -22012.984703 eV Core-core repulsion = 18727.163391 eV Total energy + Delta-G solvation = -3285.821312 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.30835 -40.42471 -38.59912 -36.78952 -34.67292 -33.34972 -32.89488 -32.24557 -29.58424 -29.02666 -26.72116 -24.86275 -24.24976 -23.67379 -23.00946 -20.23707 -18.72460 -18.23882 -17.77700 -17.56297 -17.25582 -16.88554 -16.64612 -16.45219 -16.25824 -15.56428 -15.08020 -14.55677 -14.42231 -14.15906 -14.00938 -13.74104 -13.68436 -13.43220 -13.25479 -13.07832 -12.76231 -12.65629 -12.50583 -12.30103 -12.21942 -12.01083 -11.72155 -10.77681 -10.69485 -10.66389 -10.53155 -10.30823 -9.85051 -9.47943 -8.19288 -6.30678 0.22944 0.48803 1.37565 1.42008 1.49376 1.70679 2.00548 2.39903 2.89768 3.11866 3.16362 3.47695 3.74897 3.93790 4.06309 4.13183 4.19778 4.27821 4.33246 4.34892 4.40582 4.48650 4.52465 4.62118 4.82454 4.82893 4.89099 4.94320 5.02256 5.19465 5.25405 5.29461 5.35475 5.65376 5.79872 5.89110 6.07142 6.13930 6.52212 6.81112 7.21430 7.30482 7.42781 8.86293 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.011070 B = 0.007676 C = 0.005436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2528.786024 B = 3646.908137 C = 5149.872244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.044 3.956 3 O -0.396 6.396 4 C 0.060 3.940 5 C 0.511 3.489 6 O -0.564 6.564 7 N -0.590 5.590 8 C 0.248 3.752 9 C -0.528 4.528 10 H 0.042 0.958 11 C 0.031 3.969 12 N -0.915 5.915 13 Si 0.941 3.059 14 H -0.280 1.280 15 H -0.279 1.279 16 H -0.273 1.273 17 C 0.169 3.831 18 C 0.100 3.900 19 C -0.144 4.144 20 C -0.088 4.088 21 C -0.169 4.169 22 C 0.072 3.928 23 N -0.500 5.500 24 H 0.054 0.946 25 H 0.059 0.941 26 H 0.099 0.901 27 H 0.063 0.937 28 H 0.053 0.947 29 H 0.090 0.910 30 H 0.079 0.921 31 H 0.033 0.967 32 H 0.035 0.965 33 H 0.267 0.733 34 H 0.079 0.921 35 H 0.111 0.889 36 H 0.138 0.862 37 H 0.158 0.842 38 H 0.166 0.834 39 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.229 3.578 2.547 5.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.032 4.032 3 O -0.315 6.315 4 C -0.019 4.019 5 C 0.299 3.701 6 O -0.444 6.444 7 N -0.323 5.323 8 C 0.127 3.873 9 C -0.567 4.567 10 H 0.060 0.940 11 C -0.169 4.169 12 N -0.554 5.554 13 Si 0.768 3.232 14 H -0.206 1.206 15 H -0.204 1.204 16 H -0.198 1.198 17 C 0.046 3.954 18 C -0.038 4.038 19 C -0.164 4.164 20 C -0.114 4.114 21 C -0.188 4.188 22 C -0.086 4.086 23 N -0.210 5.210 24 H 0.073 0.927 25 H 0.079 0.921 26 H 0.118 0.882 27 H 0.081 0.919 28 H 0.071 0.929 29 H 0.108 0.892 30 H 0.096 0.904 31 H 0.051 0.949 32 H 0.053 0.947 33 H 0.077 0.923 34 H 0.098 0.902 35 H 0.129 0.871 36 H 0.156 0.844 37 H 0.175 0.825 38 H 0.183 0.817 39 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -4.463 4.017 2.041 6.342 hybrid contribution 1.460 -0.723 1.335 2.106 sum -3.003 3.294 3.376 5.592 Atomic orbital electron populations 1.21740 0.92016 1.03659 1.02636 1.22817 0.96973 0.82302 1.01143 1.87919 1.19387 1.28578 1.95665 1.22102 0.82622 0.93939 1.03285 1.20493 0.82601 0.90907 0.76060 1.90629 1.50054 1.52731 1.50964 1.48083 1.05785 1.07077 1.71328 1.19268 0.85848 0.85607 0.96528 1.21447 1.21386 1.21317 0.92517 0.93968 1.25434 0.95764 0.95738 1.00002 1.69976 1.26669 1.26694 1.32074 0.85806 0.77594 0.78465 0.81376 1.20613 1.20432 1.19793 1.20252 1.02166 0.81584 0.91417 1.21614 0.89203 0.95414 0.97608 1.22089 0.98614 0.98859 0.96875 1.21923 1.00352 0.95153 0.93945 1.22437 0.93003 1.01068 1.02340 1.23155 0.98955 0.96191 0.90264 1.67521 1.32737 1.10111 1.10622 0.92692 0.92139 0.88195 0.91902 0.92889 0.89240 0.90351 0.94937 0.94667 0.92346 0.90219 0.87131 0.84417 0.82483 0.81691 0.81420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.32 10.28 71.98 0.74 -2.58 16 2 C 0.04 1.26 6.66 71.98 0.48 1.74 16 3 O -0.40 -15.59 9.87 -129.94 -1.28 -16.87 16 4 C 0.06 2.41 4.97 71.24 0.35 2.77 16 5 C 0.51 23.30 7.75 87.66 0.68 23.98 16 6 O -0.56 -28.81 16.08 15.98 0.26 -28.56 16 7 N -0.59 -25.40 2.44 -830.49 -2.03 -27.43 16 8 C 0.25 11.26 5.01 85.63 0.43 11.69 16 9 C -0.53 -26.13 9.13 25.60 0.23 -25.89 16 10 H 0.04 2.23 7.81 -2.91 -0.02 2.21 16 11 C 0.03 1.57 5.46 84.66 0.46 2.03 16 12 N -0.91 -47.66 13.29 21.45 0.28 -47.37 16 13 Si 0.94 40.50 29.54 68.60 2.03 42.52 16 14 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 15 H -0.28 -11.69 7.11 99.48 0.71 -10.99 16 16 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 17 C 0.17 6.54 5.76 85.63 0.49 7.03 16 18 C 0.10 3.89 6.36 42.55 0.27 4.16 16 19 C -0.14 -4.96 9.58 22.36 0.21 -4.75 16 20 C -0.09 -2.55 10.18 22.47 0.23 -2.32 16 21 C -0.17 -4.57 10.11 22.36 0.23 -4.34 16 22 C 0.07 2.32 11.18 84.67 0.95 3.26 16 23 N -0.50 -20.18 10.27 -183.88 -1.89 -22.07 16 24 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 25 H 0.06 1.41 8.14 -2.38 -0.02 1.39 16 26 H 0.10 1.66 8.14 -2.38 -0.02 1.64 16 27 H 0.06 1.59 8.14 -2.38 -0.02 1.58 16 28 H 0.05 1.46 8.14 -2.38 -0.02 1.44 16 29 H 0.09 3.26 7.40 -2.39 -0.02 3.25 16 30 H 0.08 3.29 8.00 -2.39 -0.02 3.27 16 31 H 0.03 1.52 6.44 -2.39 -0.02 1.50 16 32 H 0.04 1.63 7.89 -2.39 -0.02 1.61 16 33 H 0.27 13.31 8.31 -92.71 -0.77 12.54 16 34 H 0.08 3.18 7.42 -2.39 -0.02 3.16 16 35 H 0.11 3.63 7.79 -2.39 -0.02 3.61 16 36 H 0.14 4.57 8.06 -2.91 -0.02 4.54 16 37 H 0.16 3.54 8.06 -2.91 -0.02 3.51 16 38 H 0.17 3.09 8.06 -2.91 -0.02 3.07 16 39 H 0.17 4.44 8.06 -2.91 -0.02 4.41 16 Total: -1.00 -66.38 339.26 4.16 -62.22 By element: Atomic # 1 Polarization: 19.76 SS G_CDS: 1.03 Total: 20.79 kcal Atomic # 6 Polarization: 11.01 SS G_CDS: 5.76 Total: 16.77 kcal Atomic # 7 Polarization: -93.25 SS G_CDS: -3.63 Total: -96.88 kcal Atomic # 8 Polarization: -44.40 SS G_CDS: -1.03 Total: -45.43 kcal Atomic # 14 Polarization: 40.50 SS G_CDS: 2.03 Total: 42.52 kcal Total: -66.38 4.16 -62.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103439802.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.820 kcal (2) G-P(sol) polarization free energy of solvation -66.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds