Wall clock time and date at job start Tue Mar 31 2020 00:51:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42901 * 109.46614 * 2 1 4 4 C 1.35504 * 116.99897 * 180.02562 * 3 2 1 5 5 C 1.39174 * 119.52606 * 179.97438 * 4 3 2 6 6 C 1.37953 * 119.25941 * 179.97438 * 5 4 3 7 7 C 1.40280 * 118.36062 * 359.97438 * 6 5 4 8 8 C 1.47620 * 120.49752 * 180.02562 * 7 6 5 9 9 O 1.21587 * 119.99705 * 328.35380 * 8 7 6 10 10 N 1.34771 * 120.00025 * 148.35441 * 8 7 6 11 11 C 1.46502 * 120.00140 * 4.27749 * 10 8 7 12 12 C 1.46502 * 119.99926 * 184.27642 * 10 8 7 13 13 H 1.08996 * 109.47068 * 0.02562 * 12 10 8 14 14 C 1.52998 * 109.47146 * 120.00082 * 12 10 8 15 15 C 1.50705 * 109.47052 * 239.99968 * 12 10 8 16 16 H 1.08004 * 119.99629 * 359.97438 * 15 12 10 17 17 C 1.37873 * 119.99880 * 180.02562 * 15 12 10 18 18 N 1.31511 * 120.00038 * 359.97438 * 17 15 12 19 19 Si 1.86806 * 119.99974 * 179.97438 * 17 15 12 20 20 H 1.48498 * 109.47010 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47035 * 119.99731 * 19 17 15 22 22 H 1.48498 * 109.47013 * 240.00102 * 19 17 15 23 23 C 1.39523 * 119.00486 * 0.02562 * 7 6 5 24 24 N 1.31663 * 120.62708 * 359.97438 * 23 7 6 25 25 H 1.08996 * 109.47287 * 60.00140 * 1 2 3 26 26 H 1.09002 * 109.46601 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47149 * 299.99595 * 1 2 3 28 28 H 1.08991 * 109.47371 * 239.99816 * 2 1 3 29 29 H 1.09002 * 109.47183 * 119.99397 * 2 1 3 30 30 H 1.07997 * 120.36911 * 0.27018 * 5 4 3 31 31 H 1.08003 * 120.81553 * 180.02562 * 6 5 4 32 32 H 1.08993 * 109.47041 * 94.26820 * 11 10 8 33 33 H 1.09004 * 109.47020 * 214.27357 * 11 10 8 34 34 H 1.09006 * 109.46853 * 334.27098 * 11 10 8 35 35 H 1.09000 * 109.47459 * 59.99321 * 14 12 10 36 36 H 1.08996 * 109.47608 * 179.97438 * 14 12 10 37 37 H 1.09000 * 109.47142 * 300.00115 * 14 12 10 38 38 H 0.97006 * 119.99916 * 180.02562 * 18 17 15 39 39 H 1.07996 * 119.68711 * 179.97438 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.3496 1.5250 -0.0005 5 6 3.8708 2.8154 -0.0011 6 6 5.2392 2.9899 -0.0011 7 6 6.0563 1.8497 0.0000 8 6 7.5266 1.9816 0.0006 9 8 8.0522 2.9285 -0.5522 10 7 8.2863 1.0527 0.6139 11 6 7.6604 -0.1359 1.1986 12 6 9.7381 1.2314 0.6960 13 1 10.0171 2.1662 0.2099 14 6 10.1646 1.2737 2.1647 15 6 10.4256 0.0813 0.0062 16 1 9.8396 -0.7044 -0.4475 17 6 11.8025 0.0316 -0.0447 18 7 12.5159 0.9880 0.5081 19 14 12.6547 -1.3944 -0.8991 20 1 11.6348 -2.3314 -1.4349 21 1 13.4869 -0.8770 -2.0148 22 1 13.5197 -2.1088 0.0738 23 6 5.4586 0.5890 0.0005 24 7 4.1475 0.4683 0.0005 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5137 0.8900 30 1 3.2113 3.6706 0.0033 31 1 5.6707 3.9800 -0.0011 32 1 7.6853 -0.9520 0.4765 33 1 8.2046 -0.4286 2.0966 34 1 6.6257 0.0886 1.4577 35 1 9.8854 0.3391 2.6512 36 1 11.2447 1.4062 2.2258 37 1 9.6673 2.1055 2.6636 38 1 13.4847 0.9533 0.4720 39 1 6.0772 -0.2963 0.0010 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103441736.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:51:11 Heat of formation + Delta-G solvation = -20.177913 kcal Electronic energy + Delta-G solvation = -21464.578341 eV Core-core repulsion = 18180.659108 eV Total energy + Delta-G solvation = -3283.919233 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.85514 -39.22027 -37.66689 -35.48164 -33.15321 -32.50720 -32.15334 -30.59737 -28.79316 -26.58971 -25.25532 -24.47714 -23.86706 -22.46293 -21.16619 -18.99101 -18.54036 -17.32802 -16.73485 -16.45174 -16.11186 -15.44888 -14.76470 -14.71058 -14.37263 -14.00135 -13.87604 -13.66403 -13.17670 -12.80144 -12.71555 -12.60184 -12.42294 -12.30930 -11.78081 -11.58363 -11.33309 -11.08658 -10.84901 -10.82012 -10.74695 -10.27752 -10.20432 -9.93730 -9.77847 -9.21281 -9.06175 -8.49581 -8.43327 -7.66384 -6.09406 -4.17450 0.89832 1.19267 2.85599 3.25184 3.27225 3.33657 3.36616 3.79404 3.95471 4.20679 4.38575 4.77326 4.79227 4.88008 4.90538 5.04708 5.08204 5.20080 5.22522 5.46532 5.51773 5.57734 5.62604 5.74873 5.87566 5.94955 6.14532 6.20586 6.32550 6.72966 6.78641 7.01256 7.10943 7.36378 7.47511 7.68251 7.72701 7.97929 8.15447 8.44284 8.79009 8.96393 9.49138 10.96006 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.030249 B = 0.003811 C = 0.003582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.422835 B = 7345.086773 C = 7814.185171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.065 3.935 3 O -0.307 6.307 4 C 0.330 3.670 5 C -0.199 4.199 6 C 0.008 3.992 7 C -0.209 4.209 8 C 0.552 3.448 9 O -0.546 6.546 10 N -0.584 5.584 11 C 0.069 3.931 12 C 0.258 3.742 13 H 0.065 0.935 14 C -0.148 4.148 15 C -0.525 4.525 16 H 0.060 0.940 17 C 0.065 3.935 18 N -0.888 5.888 19 Si 0.899 3.101 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.283 1.283 23 C 0.158 3.842 24 N -0.545 5.545 25 H 0.064 0.936 26 H 0.078 0.922 27 H 0.064 0.936 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.144 0.856 31 H 0.150 0.850 32 H 0.058 0.942 33 H 0.074 0.926 34 H 0.065 0.935 35 H 0.031 0.969 36 H 0.095 0.905 37 H 0.012 0.988 38 H 0.263 0.737 39 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.445 -1.859 1.985 19.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.010 4.010 3 O -0.214 6.214 4 C 0.151 3.849 5 C -0.220 4.220 6 C -0.017 4.017 7 C -0.215 4.215 8 C 0.338 3.662 9 O -0.425 6.425 10 N -0.314 5.314 11 C -0.075 4.075 12 C 0.158 3.842 13 H 0.083 0.917 14 C -0.207 4.207 15 C -0.564 4.564 16 H 0.079 0.921 17 C -0.138 4.138 18 N -0.526 5.526 19 Si 0.727 3.273 20 H -0.198 1.198 21 H -0.209 1.209 22 H -0.209 1.209 23 C 0.002 3.998 24 N -0.269 5.269 25 H 0.083 0.917 26 H 0.097 0.903 27 H 0.083 0.917 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.162 0.838 31 H 0.168 0.832 32 H 0.076 0.924 33 H 0.093 0.907 34 H 0.083 0.917 35 H 0.050 0.950 36 H 0.114 0.886 37 H 0.031 0.969 38 H 0.073 0.927 39 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -19.552 -1.964 1.744 19.728 hybrid contribution 0.933 -0.321 -0.397 1.063 sum -18.620 -2.285 1.347 18.808 Atomic orbital electron populations 1.21822 0.93115 1.02862 1.03230 1.22619 0.94606 0.81066 1.02758 1.86183 1.17045 1.30783 1.87433 1.20016 0.83907 0.90170 0.90778 1.20971 0.95502 0.95679 1.09822 1.21483 0.91464 0.99350 0.89433 1.21093 0.95992 0.94939 1.09437 1.17888 0.85197 0.83301 0.79776 1.90750 1.73851 1.32825 1.45084 1.48164 1.09958 1.19672 1.53610 1.22165 0.97378 0.88559 0.99398 1.19003 0.72123 0.99188 0.93864 0.91691 1.22107 1.04444 0.97190 0.96909 1.21340 0.91417 1.07681 1.35961 0.92136 1.24892 0.97252 0.96304 0.95331 1.69885 1.06168 1.32416 1.44118 0.86427 0.79501 0.82082 0.79310 1.19777 1.20898 1.20942 1.23488 0.89011 0.97577 0.89712 1.67410 1.06376 1.32687 1.20455 0.91697 0.90317 0.91703 0.91475 0.91461 0.83775 0.83213 0.92358 0.90709 0.91667 0.94998 0.88644 0.96901 0.92702 0.80174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 10.28 37.16 0.38 -0.66 16 2 C 0.06 0.62 6.02 37.16 0.22 0.85 16 3 O -0.31 -3.73 10.10 -18.21 -0.18 -3.91 16 4 C 0.33 4.47 7.49 -16.96 -0.13 4.34 16 5 C -0.20 -2.52 10.02 -39.34 -0.39 -2.91 16 6 C 0.01 0.12 9.73 -38.92 -0.38 -0.26 16 7 C -0.21 -3.47 5.49 -104.82 -0.58 -4.05 16 8 C 0.55 11.59 7.45 -12.43 -0.09 11.49 16 9 O -0.55 -13.52 16.14 5.29 0.09 -13.43 16 10 N -0.58 -12.34 2.75 -176.46 -0.49 -12.82 16 11 C 0.07 1.13 8.08 59.85 0.48 1.61 16 12 C 0.26 6.51 2.63 -69.08 -0.18 6.32 16 13 H 0.07 1.90 6.91 -51.93 -0.36 1.54 16 14 C -0.15 -3.48 8.94 37.16 0.33 -3.15 16 15 C -0.53 -14.02 8.37 -34.44 -0.29 -14.31 16 16 H 0.06 1.59 7.53 -52.48 -0.39 1.19 16 17 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 18 N -0.89 -24.88 11.32 55.43 0.63 -24.25 16 19 Si 0.90 20.87 29.54 -169.99 -5.02 15.85 16 20 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 23 C 0.16 2.34 8.62 -17.15 -0.15 2.19 16 24 N -0.55 -7.75 9.18 -12.96 -0.12 -7.87 16 25 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.07 0.66 8.10 -51.93 -0.42 0.24 16 29 H 0.07 0.65 8.10 -51.93 -0.42 0.23 16 30 H 0.14 1.44 8.06 -52.49 -0.42 1.02 16 31 H 0.15 2.02 8.01 -52.48 -0.42 1.60 16 32 H 0.06 0.90 7.31 -51.93 -0.38 0.52 16 33 H 0.07 1.22 6.44 -51.93 -0.33 0.89 16 34 H 0.07 0.91 4.73 -51.93 -0.25 0.66 16 35 H 0.03 0.68 6.69 -51.93 -0.35 0.34 16 36 H 0.10 2.47 6.07 -51.93 -0.32 2.15 16 37 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 38 H 0.26 6.99 8.31 -40.82 -0.34 6.66 16 39 H 0.18 2.46 4.78 -52.49 -0.25 2.20 16 LS Contribution 322.37 15.07 4.86 4.86 Total: -1.00 -31.29 322.37 -6.23 -37.53 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: -5.14 Total: 0.93 kcal Atomic # 6 Polarization: 3.97 SS G_CDS: -0.86 Total: 3.11 kcal Atomic # 7 Polarization: -44.97 SS G_CDS: 0.02 Total: -44.94 kcal Atomic # 8 Polarization: -17.24 SS G_CDS: -0.10 Total: -17.34 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -31.29 -6.23 -37.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103441736.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.350 kcal (2) G-P(sol) polarization free energy of solvation -31.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds