Wall clock time and date at job start Tue Mar 31 2020 00:51:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42901 * 109.46614 * 2 1 4 4 C 1.35504 * 116.99897 * 180.02562 * 3 2 1 5 5 C 1.39174 * 119.52606 * 179.97438 * 4 3 2 6 6 C 1.37953 * 119.25941 * 179.97438 * 5 4 3 7 7 C 1.40280 * 118.36062 * 359.97438 * 6 5 4 8 8 C 1.47620 * 120.49752 * 180.02562 * 7 6 5 9 9 O 1.21587 * 119.99705 * 328.35380 * 8 7 6 10 10 N 1.34771 * 120.00025 * 148.35441 * 8 7 6 11 11 C 1.46502 * 120.00140 * 4.27749 * 10 8 7 12 12 C 1.46502 * 119.99926 * 184.27642 * 10 8 7 13 13 H 1.08996 * 109.47068 * 0.02562 * 12 10 8 14 14 C 1.52998 * 109.47146 * 120.00082 * 12 10 8 15 15 C 1.50705 * 109.47052 * 239.99968 * 12 10 8 16 16 H 1.08004 * 119.99629 * 359.97438 * 15 12 10 17 17 C 1.37873 * 119.99880 * 180.02562 * 15 12 10 18 18 N 1.31511 * 120.00038 * 359.97438 * 17 15 12 19 19 Si 1.86806 * 119.99974 * 179.97438 * 17 15 12 20 20 H 1.48498 * 109.47010 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47035 * 119.99731 * 19 17 15 22 22 H 1.48498 * 109.47013 * 240.00102 * 19 17 15 23 23 C 1.39523 * 119.00486 * 0.02562 * 7 6 5 24 24 N 1.31663 * 120.62708 * 359.97438 * 23 7 6 25 25 H 1.08996 * 109.47287 * 60.00140 * 1 2 3 26 26 H 1.09002 * 109.46601 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47149 * 299.99595 * 1 2 3 28 28 H 1.08991 * 109.47371 * 239.99816 * 2 1 3 29 29 H 1.09002 * 109.47183 * 119.99397 * 2 1 3 30 30 H 1.07997 * 120.36911 * 0.27018 * 5 4 3 31 31 H 1.08003 * 120.81553 * 180.02562 * 6 5 4 32 32 H 1.08993 * 109.47041 * 94.26820 * 11 10 8 33 33 H 1.09004 * 109.47020 * 214.27357 * 11 10 8 34 34 H 1.09006 * 109.46853 * 334.27098 * 11 10 8 35 35 H 1.09000 * 109.47459 * 59.99321 * 14 12 10 36 36 H 1.08996 * 109.47608 * 179.97438 * 14 12 10 37 37 H 1.09000 * 109.47142 * 300.00115 * 14 12 10 38 38 H 0.97006 * 119.99916 * 180.02562 * 18 17 15 39 39 H 1.07996 * 119.68711 * 179.97438 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.3496 1.5250 -0.0005 5 6 3.8708 2.8154 -0.0011 6 6 5.2392 2.9899 -0.0011 7 6 6.0563 1.8497 0.0000 8 6 7.5266 1.9816 0.0006 9 8 8.0522 2.9285 -0.5522 10 7 8.2863 1.0527 0.6139 11 6 7.6604 -0.1359 1.1986 12 6 9.7381 1.2314 0.6960 13 1 10.0171 2.1662 0.2099 14 6 10.1646 1.2737 2.1647 15 6 10.4256 0.0813 0.0062 16 1 9.8396 -0.7044 -0.4475 17 6 11.8025 0.0316 -0.0447 18 7 12.5159 0.9880 0.5081 19 14 12.6547 -1.3944 -0.8991 20 1 11.6348 -2.3314 -1.4349 21 1 13.4869 -0.8770 -2.0148 22 1 13.5197 -2.1088 0.0738 23 6 5.4586 0.5890 0.0005 24 7 4.1475 0.4683 0.0005 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5137 0.8900 30 1 3.2113 3.6706 0.0033 31 1 5.6707 3.9800 -0.0011 32 1 7.6853 -0.9520 0.4765 33 1 8.2046 -0.4286 2.0966 34 1 6.6257 0.0886 1.4577 35 1 9.8854 0.3391 2.6512 36 1 11.2447 1.4062 2.2258 37 1 9.6673 2.1055 2.6636 38 1 13.4847 0.9533 0.4720 39 1 6.0772 -0.2963 0.0010 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103441736.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:51:11 Heat of formation + Delta-G solvation = -41.432438 kcal Electronic energy + Delta-G solvation = -21465.500006 eV Core-core repulsion = 18180.659108 eV Total energy + Delta-G solvation = -3284.840898 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.02955 -40.62039 -38.83052 -37.25505 -34.97249 -33.64359 -33.15040 -31.96553 -30.30512 -28.05005 -27.30151 -25.53477 -25.08811 -23.41892 -22.73310 -20.57851 -19.58335 -18.74210 -18.39072 -17.70217 -17.36444 -17.13048 -16.42373 -15.97045 -15.83013 -15.07323 -15.00530 -14.89431 -14.55429 -14.31132 -14.15556 -13.74118 -13.48637 -13.39297 -13.30548 -12.97262 -12.77469 -12.70398 -12.49257 -12.47676 -12.17521 -12.11412 -11.69148 -11.17694 -11.06783 -11.04466 -10.62889 -10.49686 -9.62556 -9.37561 -8.14294 -6.30658 -0.28872 0.09368 1.42111 1.44122 1.55165 1.81964 1.92764 2.23057 2.45912 2.68613 3.13575 3.14579 3.56454 3.75729 3.98577 3.98735 4.11978 4.22463 4.27561 4.49434 4.54891 4.62408 4.65767 4.76089 4.87863 4.88810 4.96191 4.98426 5.02437 5.06351 5.21488 5.29324 5.46005 5.59497 5.65975 6.01572 6.12550 6.15211 6.61558 6.72334 6.76664 7.24622 7.43262 8.90427 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.030249 B = 0.003811 C = 0.003582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.422835 B = 7345.086773 C = 7814.185171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.057 3.943 3 O -0.308 6.308 4 C 0.330 3.670 5 C -0.188 4.188 6 C 0.007 3.993 7 C -0.228 4.228 8 C 0.547 3.453 9 O -0.597 6.597 10 N -0.590 5.590 11 C 0.066 3.934 12 C 0.262 3.738 13 H 0.012 0.988 14 C -0.134 4.134 15 C -0.538 4.538 16 H 0.063 0.937 17 C 0.015 3.985 18 N -0.917 5.917 19 Si 0.965 3.035 20 H -0.264 1.264 21 H -0.287 1.287 22 H -0.275 1.275 23 C 0.166 3.834 24 N -0.548 5.548 25 H 0.065 0.935 26 H 0.098 0.902 27 H 0.067 0.933 28 H 0.064 0.936 29 H 0.068 0.932 30 H 0.175 0.825 31 H 0.153 0.847 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.094 0.906 35 H 0.050 0.950 36 H 0.070 0.930 37 H 0.021 0.979 38 H 0.265 0.735 39 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.848 -3.502 2.175 22.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.018 4.018 3 O -0.215 6.215 4 C 0.151 3.849 5 C -0.208 4.208 6 C -0.018 4.018 7 C -0.234 4.234 8 C 0.336 3.664 9 O -0.481 6.481 10 N -0.319 5.319 11 C -0.076 4.076 12 C 0.160 3.840 13 H 0.030 0.970 14 C -0.193 4.193 15 C -0.576 4.576 16 H 0.081 0.919 17 C -0.184 4.184 18 N -0.556 5.556 19 Si 0.790 3.210 20 H -0.188 1.188 21 H -0.213 1.213 22 H -0.200 1.200 23 C 0.010 3.990 24 N -0.272 5.272 25 H 0.084 0.916 26 H 0.117 0.883 27 H 0.086 0.914 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.192 0.808 31 H 0.171 0.829 32 H 0.089 0.911 33 H 0.095 0.905 34 H 0.112 0.888 35 H 0.069 0.931 36 H 0.088 0.912 37 H 0.040 0.960 38 H 0.074 0.926 39 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -22.006 -3.640 1.954 22.391 hybrid contribution 1.534 0.213 -0.462 1.617 sum -20.472 -3.426 1.492 20.810 Atomic orbital electron populations 1.21836 0.90857 1.04292 1.03440 1.22888 0.96383 0.79820 1.02659 1.86210 1.16004 1.32416 1.86833 1.20305 0.84550 0.90374 0.89624 1.21206 0.94871 0.96516 1.08184 1.21589 0.92159 0.98957 0.89106 1.20748 0.93132 0.96736 1.12814 1.18519 0.87032 0.82259 0.78558 1.90710 1.75254 1.34828 1.47262 1.48127 1.08616 1.21295 1.53893 1.22415 0.98626 0.87017 0.99511 1.18608 0.74822 0.96399 0.94144 0.96995 1.21898 1.02769 0.98476 0.96139 1.21606 0.91912 1.07949 1.36175 0.91869 1.25726 0.97997 0.98760 0.95943 1.70024 1.06406 1.34108 1.45108 0.85399 0.78405 0.79065 0.78097 1.18794 1.21279 1.19998 1.23525 0.89358 0.97043 0.89075 1.67474 1.05875 1.33037 1.20788 0.91556 0.88294 0.91402 0.91736 0.91397 0.80776 0.82902 0.91101 0.90477 0.88804 0.93130 0.91158 0.95998 0.92626 0.79163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 10.28 71.98 0.74 -0.83 16 2 C 0.06 0.95 6.02 71.98 0.43 1.38 16 3 O -0.31 -6.59 10.10 -88.06 -0.89 -7.48 16 4 C 0.33 8.08 7.49 84.83 0.64 8.72 16 5 C -0.19 -4.27 10.02 22.43 0.22 -4.04 16 6 C 0.01 0.21 9.73 22.70 0.22 0.43 16 7 C -0.23 -7.45 5.49 -19.99 -0.11 -7.56 16 8 C 0.55 23.51 7.45 86.72 0.65 24.15 16 9 O -0.60 -31.09 16.14 -3.99 -0.06 -31.15 16 10 N -0.59 -25.21 2.75 -830.45 -2.29 -27.50 16 11 C 0.07 2.08 8.08 127.77 1.03 3.11 16 12 C 0.26 13.62 2.63 44.25 0.12 13.74 16 13 H 0.01 0.75 6.91 -2.39 -0.02 0.73 16 14 C -0.13 -6.43 8.94 71.98 0.64 -5.78 16 15 C -0.54 -29.07 8.37 25.60 0.21 -28.85 16 16 H 0.06 3.30 7.53 -2.91 -0.02 3.27 16 17 C 0.02 0.83 5.30 84.65 0.45 1.28 16 18 N -0.92 -52.66 11.32 21.45 0.24 -52.42 16 19 Si 0.97 42.84 29.54 68.60 2.03 44.86 16 20 H -0.26 -11.21 7.11 99.48 0.71 -10.51 16 21 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 22 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 23 C 0.17 4.62 8.62 85.03 0.73 5.36 16 24 N -0.55 -14.27 9.18 -307.81 -2.82 -17.10 16 25 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 26 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.06 1.11 8.10 -2.39 -0.02 1.09 16 29 H 0.07 1.13 8.10 -2.39 -0.02 1.11 16 30 H 0.17 2.87 8.06 -2.91 -0.02 2.85 16 31 H 0.15 4.08 8.01 -2.91 -0.02 4.05 16 32 H 0.07 2.06 7.31 -2.39 -0.02 2.04 16 33 H 0.08 2.39 6.44 -2.38 -0.02 2.37 16 34 H 0.09 2.42 4.73 -2.38 -0.01 2.41 16 35 H 0.05 2.17 6.69 -2.39 -0.02 2.15 16 36 H 0.07 3.73 6.07 -2.39 -0.01 3.72 16 37 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.26 14.35 8.31 -92.70 -0.77 13.58 16 39 H 0.19 4.79 4.78 -2.91 -0.01 4.78 16 Total: -1.00 -69.44 322.37 3.24 -66.19 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: 1.06 Total: 13.50 kcal Atomic # 6 Polarization: 5.12 SS G_CDS: 5.98 Total: 11.10 kcal Atomic # 7 Polarization: -92.15 SS G_CDS: -4.87 Total: -97.01 kcal Atomic # 8 Polarization: -37.68 SS G_CDS: -0.95 Total: -38.63 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.86 kcal Total: -69.44 3.24 -66.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103441736.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.762 kcal (2) G-P(sol) polarization free energy of solvation -69.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds