Wall clock time and date at job start Tue Mar 31 2020 00:51:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42900 * 109.47526 * 2 1 4 4 C 1.35503 * 117.00249 * 180.02562 * 3 2 1 5 5 C 1.39164 * 119.52338 * 180.02562 * 4 3 2 6 6 C 1.37958 * 119.26010 * 180.02562 * 5 4 3 7 7 C 1.40285 * 118.35853 * 0.02562 * 6 5 4 8 8 C 1.47617 * 120.50028 * 179.97438 * 7 6 5 9 9 O 1.21575 * 119.99936 * 141.55355 * 8 7 6 10 10 N 1.34776 * 119.99597 * 321.82932 * 8 7 6 11 11 C 1.46506 * 120.00077 * 4.58549 * 10 8 7 12 12 C 1.46505 * 119.99948 * 184.58591 * 10 8 7 13 13 H 1.08995 * 109.46756 * 359.97438 * 12 10 8 14 14 C 1.53002 * 109.47033 * 240.00067 * 12 10 8 15 15 C 1.50701 * 109.47152 * 120.00011 * 12 10 8 16 16 H 1.07992 * 119.99966 * 34.09811 * 15 12 10 17 17 C 1.37877 * 119.99542 * 214.10113 * 15 12 10 18 18 N 1.31518 * 119.99596 * 183.31243 * 17 15 12 19 19 Si 1.86796 * 120.00429 * 3.31268 * 17 15 12 20 20 H 1.48501 * 109.47342 * 92.97840 * 19 17 15 21 21 H 1.48496 * 109.47261 * 212.98055 * 19 17 15 22 22 H 1.48503 * 109.46933 * 332.98094 * 19 17 15 23 23 C 1.39523 * 119.00260 * 0.24776 * 7 6 5 24 24 N 1.31668 * 120.62461 * 359.45991 * 23 7 6 25 25 H 1.09004 * 109.47115 * 59.99527 * 1 2 3 26 26 H 1.08994 * 109.47552 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46810 * 300.00377 * 1 2 3 28 28 H 1.09003 * 109.47162 * 240.00034 * 2 1 3 29 29 H 1.09001 * 109.47544 * 120.00204 * 2 1 3 30 30 H 1.07998 * 120.37251 * 359.97438 * 5 4 3 31 31 H 1.07998 * 120.82155 * 179.97438 * 6 5 4 32 32 H 1.08990 * 109.47220 * 84.85566 * 11 10 8 33 33 H 1.09005 * 109.46474 * 204.85692 * 11 10 8 34 34 H 1.08995 * 109.47030 * 324.85134 * 11 10 8 35 35 H 1.08998 * 109.47208 * 174.86019 * 14 12 10 36 36 H 1.09000 * 109.46872 * 294.86362 * 14 12 10 37 37 H 1.09001 * 109.46891 * 54.85671 * 14 12 10 38 38 H 0.96997 * 119.99742 * 179.97438 * 18 17 15 39 39 H 1.07997 * 119.68912 * 179.74261 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3497 1.5247 -0.0005 5 6 3.8710 2.8151 0.0000 6 6 5.2395 2.9895 -0.0011 7 6 6.0566 1.8492 -0.0033 8 6 7.5268 1.9810 -0.0051 9 8 8.2067 1.2133 0.6480 10 7 8.1151 2.9558 -0.7263 11 6 7.2935 3.9457 -1.4274 12 6 9.5761 3.0256 -0.8092 13 1 10.0121 2.2132 -0.2280 14 6 10.0552 4.3666 -0.2496 15 6 10.0041 2.9002 -2.2487 16 1 9.3881 3.3141 -3.0332 17 6 11.1821 2.2569 -2.5640 18 7 11.5884 2.2041 -3.8137 19 14 12.2011 1.4601 -1.2163 20 1 11.8190 0.0311 -1.0861 21 1 13.6419 1.5578 -1.5618 22 1 11.9522 2.1583 0.0706 23 6 5.4586 0.5886 -0.0095 24 7 4.1475 0.4681 -0.0026 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 3.2116 3.6704 0.0004 31 1 5.6711 3.9795 -0.0012 32 1 7.0317 4.7516 -0.7419 33 1 7.8540 4.3523 -2.2692 34 1 6.3836 3.4695 -1.7927 35 1 11.1448 4.3823 -0.2266 36 1 9.6934 5.1753 -0.8847 37 1 9.6684 4.4976 0.7610 38 1 12.4173 1.7519 -4.0355 39 1 6.0771 -0.2967 -0.0154 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103441738.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:51:15 Heat of formation + Delta-G solvation = -52.002511 kcal Electronic energy + Delta-G solvation = -21508.432260 eV Core-core repulsion = 18223.133009 eV Total energy + Delta-G solvation = -3285.299251 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.97999 -40.65661 -38.84522 -37.23616 -34.95094 -33.79437 -33.14632 -32.01675 -30.80604 -27.89504 -27.27288 -25.42361 -25.32270 -23.22087 -22.80350 -20.45908 -19.68242 -19.19970 -18.20865 -17.76732 -17.48275 -17.29646 -16.34962 -16.03174 -15.58919 -15.24375 -15.06957 -14.90614 -14.65916 -14.41306 -14.20383 -13.91866 -13.63457 -13.44821 -13.32922 -13.15192 -13.06326 -12.76064 -12.63297 -12.47811 -12.31169 -11.78854 -11.72909 -11.28657 -11.11065 -10.94723 -10.80086 -10.59972 -9.67710 -9.35531 -8.37153 -6.41439 -0.24716 0.12079 1.27509 1.34469 1.43150 1.73595 1.93235 2.21967 2.28113 2.70069 3.03932 3.15605 3.55393 3.78730 3.95866 4.01229 4.08312 4.18829 4.37641 4.45920 4.47868 4.59329 4.63048 4.73707 4.75708 4.80609 4.87329 4.96051 4.97732 5.01294 5.15775 5.20715 5.29110 5.36521 5.53764 5.77663 6.11018 6.15168 6.61366 6.64623 6.70260 7.18837 7.30038 8.78041 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.031575 B = 0.003949 C = 0.003835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.577012 B = 7089.294988 C = 7298.789975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.058 3.942 3 O -0.307 6.307 4 C 0.324 3.676 5 C -0.183 4.183 6 C -0.007 4.007 7 C -0.223 4.223 8 C 0.551 3.449 9 O -0.596 6.596 10 N -0.587 5.587 11 C 0.072 3.928 12 C 0.221 3.779 13 H 0.042 0.958 14 C -0.139 4.139 15 C -0.520 4.520 16 H 0.056 0.944 17 C 0.029 3.971 18 N -0.934 5.934 19 Si 0.923 3.077 20 H -0.285 1.285 21 H -0.276 1.276 22 H -0.247 1.247 23 C 0.183 3.817 24 N -0.555 5.555 25 H 0.068 0.932 26 H 0.097 0.903 27 H 0.068 0.932 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.182 0.818 31 H 0.181 0.819 32 H 0.090 0.910 33 H 0.069 0.931 34 H 0.078 0.922 35 H 0.049 0.951 36 H 0.065 0.935 37 H 0.049 0.951 38 H 0.268 0.732 39 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.594 2.652 8.209 22.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.017 4.017 3 O -0.214 6.214 4 C 0.145 3.855 5 C -0.203 4.203 6 C -0.032 4.032 7 C -0.229 4.229 8 C 0.340 3.660 9 O -0.479 6.479 10 N -0.316 5.316 11 C -0.070 4.070 12 C 0.119 3.881 13 H 0.060 0.940 14 C -0.197 4.197 15 C -0.558 4.558 16 H 0.074 0.926 17 C -0.171 4.171 18 N -0.574 5.574 19 Si 0.748 3.252 20 H -0.211 1.211 21 H -0.201 1.201 22 H -0.171 1.171 23 C 0.027 3.973 24 N -0.279 5.279 25 H 0.087 0.913 26 H 0.115 0.885 27 H 0.087 0.913 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.199 0.801 31 H 0.198 0.802 32 H 0.108 0.892 33 H 0.087 0.913 34 H 0.096 0.904 35 H 0.068 0.932 36 H 0.084 0.916 37 H 0.068 0.932 38 H 0.077 0.923 39 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -20.711 1.601 8.400 22.407 hybrid contribution 1.482 -0.311 0.008 1.515 sum -19.229 1.289 8.408 21.026 Atomic orbital electron populations 1.21827 0.90621 1.04260 1.03585 1.22846 0.96535 0.80033 1.02296 1.86205 1.16109 1.32074 1.86982 1.20416 0.84431 0.90648 0.89987 1.21329 0.95407 0.96093 1.07500 1.22205 0.92116 0.99471 0.89366 1.20690 0.93287 0.96627 1.12314 1.18489 0.87731 0.80522 0.79244 1.90700 1.66301 1.45520 1.45429 1.48183 1.07988 1.28307 1.47119 1.22232 0.95271 0.91698 0.97806 1.19215 0.77503 0.96144 0.95282 0.94022 1.22078 1.00617 0.97764 0.99280 1.21365 1.06294 1.36203 0.91985 0.92620 1.25618 0.98663 0.95839 0.96954 1.69988 1.23694 1.44512 1.19161 0.86102 0.78439 0.79362 0.81280 1.21122 1.20095 1.17072 1.22438 0.88905 0.96572 0.89426 1.67370 1.05825 1.33701 1.20993 0.91341 0.88451 0.91263 0.92041 0.91931 0.80087 0.80199 0.89200 0.91258 0.90359 0.93165 0.91566 0.93224 0.92257 0.82352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 10.28 71.98 0.74 -0.93 16 2 C 0.06 1.04 6.02 71.98 0.43 1.47 16 3 O -0.31 -6.69 10.10 -88.05 -0.89 -7.58 16 4 C 0.32 7.98 7.49 84.83 0.64 8.62 16 5 C -0.18 -3.66 10.02 22.43 0.22 -3.43 16 6 C -0.01 -0.15 7.68 22.70 0.17 0.02 16 7 C -0.22 -7.01 5.27 -19.99 -0.11 -7.12 16 8 C 0.55 22.29 7.37 86.72 0.64 22.92 16 9 O -0.60 -29.06 16.25 -3.95 -0.06 -29.12 16 10 N -0.59 -23.25 2.75 -830.47 -2.29 -25.53 16 11 C 0.07 2.08 7.98 127.77 1.02 3.10 16 12 C 0.22 10.29 2.21 44.25 0.10 10.39 16 13 H 0.04 2.17 4.01 -2.39 -0.01 2.16 16 14 C -0.14 -5.42 9.09 71.98 0.65 -4.76 16 15 C -0.52 -28.32 8.70 25.60 0.22 -28.10 16 16 H 0.06 3.23 6.90 -2.91 -0.02 3.21 16 17 C 0.03 1.65 5.47 84.65 0.46 2.12 16 18 N -0.93 -56.74 13.96 21.45 0.30 -56.44 16 19 Si 0.92 45.59 27.00 68.60 1.85 47.44 16 20 H -0.28 -14.52 7.11 99.48 0.71 -13.81 16 21 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 22 H -0.25 -11.58 6.47 99.48 0.64 -10.93 16 23 C 0.18 5.75 10.79 85.03 0.92 6.67 16 24 N -0.55 -15.86 9.18 -307.82 -2.82 -18.68 16 25 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.06 1.18 8.10 -2.39 -0.02 1.16 16 29 H 0.06 1.18 8.10 -2.39 -0.02 1.16 16 30 H 0.18 2.31 8.06 -2.91 -0.02 2.29 16 31 H 0.18 3.04 5.28 -2.91 -0.02 3.02 16 32 H 0.09 1.84 6.84 -2.39 -0.02 1.82 16 33 H 0.07 2.26 6.63 -2.38 -0.02 2.25 16 34 H 0.08 2.00 5.85 -2.39 -0.01 1.98 16 35 H 0.05 2.00 7.90 -2.39 -0.02 1.98 16 36 H 0.07 2.35 7.84 -2.39 -0.02 2.33 16 37 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 39 H 0.16 5.08 8.05 -2.91 -0.02 5.06 16 Total: -1.00 -72.29 322.73 3.20 -69.09 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: 1.00 Total: 9.87 kcal Atomic # 6 Polarization: 4.85 SS G_CDS: 6.12 Total: 10.96 kcal Atomic # 7 Polarization: -95.85 SS G_CDS: -4.81 Total: -100.66 kcal Atomic # 8 Polarization: -35.75 SS G_CDS: -0.95 Total: -36.70 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 1.85 Total: 47.44 kcal Total: -72.29 3.20 -69.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103441738.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.089 kcal (2) G-P(sol) polarization free energy of solvation -72.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds