Wall clock time and date at job start Tue Mar 31 2020 01:37:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35970 * 116.99637 * 2 1 4 4 C 1.38726 * 119.98035 * 179.97438 * 3 2 1 5 5 C 1.38094 * 120.01366 * 180.29840 * 4 3 2 6 6 C 1.38851 * 119.98286 * 359.45089 * 5 4 3 7 7 N 1.40109 * 120.01609 * 180.25532 * 6 5 4 8 8 C 1.34776 * 120.00194 * 212.04038 * 7 6 5 9 9 O 1.21293 * 119.99648 * 4.52081 * 8 7 6 10 10 C 1.50694 * 120.00385 * 184.52958 * 8 7 6 11 11 C 1.53001 * 109.47406 * 179.97438 * 10 8 7 12 12 N 1.46500 * 109.47051 * 180.02562 * 11 10 8 13 13 C 1.46494 * 120.00683 * 89.99525 * 12 11 10 14 14 C 1.36938 * 119.99508 * 269.99393 * 12 11 10 15 15 H 1.08004 * 120.00070 * 139.37683 * 14 12 11 16 16 C 1.38813 * 120.00285 * 319.37698 * 14 12 11 17 17 N 1.31622 * 119.99871 * 160.51186 * 16 14 12 18 18 Si 1.86796 * 120.00073 * 340.52333 * 16 14 12 19 19 H 1.48500 * 109.47572 * 95.24701 * 18 16 14 20 20 H 1.48502 * 109.47135 * 215.25043 * 18 16 14 21 21 H 1.48502 * 109.46869 * 335.24640 * 18 16 14 22 22 C 1.38848 * 119.96994 * 0.54810 * 6 5 4 23 23 C 1.38093 * 119.98241 * 359.72719 * 22 6 5 24 24 H 1.09000 * 109.47296 * 300.00120 * 1 2 3 25 25 H 1.08999 * 109.46976 * 60.00229 * 1 2 3 26 26 H 1.09002 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.08000 * 119.99598 * 0.02562 * 4 3 2 28 28 H 1.07993 * 120.01094 * 179.70266 * 5 4 3 29 29 H 0.96994 * 119.99761 * 32.03867 * 7 6 5 30 30 H 1.09003 * 109.46856 * 300.00092 * 10 8 7 31 31 H 1.09006 * 109.47226 * 59.99136 * 10 8 7 32 32 H 1.09002 * 109.46586 * 299.99669 * 11 10 8 33 33 H 1.08996 * 109.47017 * 59.99404 * 11 10 8 34 34 H 1.09003 * 109.47066 * 95.02173 * 13 12 11 35 35 H 1.08992 * 109.47554 * 215.02596 * 13 12 11 36 36 H 1.09005 * 109.46977 * 335.02783 * 13 12 11 37 37 H 0.97001 * 119.99568 * 179.97438 * 17 16 14 38 38 H 1.07997 * 120.01078 * 179.70134 * 22 6 5 39 39 H 1.08005 * 119.99124 * 179.97438 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2115 0.0000 4 6 3.4316 1.2838 0.0005 5 6 4.0592 2.5138 0.0068 6 6 3.3033 3.6785 0.0010 7 7 3.9393 4.9269 0.0019 8 6 3.3606 5.9776 0.6164 9 8 2.3305 5.8245 1.2381 10 6 3.9932 7.3427 0.5308 11 6 3.1422 8.3489 1.3080 12 7 3.7569 9.6761 1.2243 13 6 3.3946 10.5837 0.1330 14 6 4.6703 10.0681 2.1662 15 1 5.5508 10.6182 1.8686 16 6 4.4646 9.7586 3.5037 17 7 5.4751 9.7785 4.3468 18 14 2.7536 9.3135 4.1068 19 1 2.5996 7.8365 4.1133 20 1 2.5621 9.8372 5.4832 21 1 1.7388 9.9130 3.2035 22 6 1.9167 3.6055 0.0004 23 6 1.2905 2.3747 -0.0001 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 4.0195 0.3778 0.0005 28 1 5.1376 2.5700 0.0120 29 1 4.7961 5.0350 -0.4397 30 1 4.9951 7.3063 0.9588 31 1 4.0553 7.6496 -0.5133 32 1 2.1406 8.3852 0.8795 33 1 3.0798 8.0421 2.3521 34 1 2.6053 11.2570 0.4673 35 1 4.2682 11.1655 -0.1609 36 1 3.0407 10.0039 -0.7195 37 1 5.3312 9.5625 5.2814 38 1 1.3281 4.5110 0.0008 39 1 0.2119 2.3177 -0.0001 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103472642.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:22 Heat of formation + Delta-G solvation = -18.268149 kcal Electronic energy + Delta-G solvation = -21121.867900 eV Core-core repulsion = 17838.031481 eV Total energy + Delta-G solvation = -3283.836419 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.60986 -39.53509 -37.42638 -35.88942 -34.26948 -31.83746 -31.21555 -30.63314 -29.00105 -27.23868 -26.19354 -24.36190 -23.04555 -21.97656 -20.83157 -20.05541 -18.33700 -17.55399 -17.08174 -16.41390 -16.01058 -15.85018 -15.54949 -14.83929 -14.65032 -14.09877 -13.90192 -13.63793 -13.45191 -13.10265 -12.85093 -12.83949 -12.58813 -12.33036 -12.11531 -11.71098 -11.54906 -11.48544 -11.04606 -10.97538 -10.59908 -10.42190 -9.96253 -9.81684 -9.58805 -9.48126 -9.07921 -8.52056 -7.73613 -6.80353 -6.00994 -3.48817 1.20777 1.30890 2.83379 3.07747 3.23342 3.42452 3.52218 3.58740 3.73925 4.54682 4.66187 4.74763 4.86578 4.92105 4.94080 5.15684 5.23861 5.26627 5.30349 5.42108 5.51649 5.69251 5.78358 5.82530 5.92929 6.20887 6.24398 6.28433 6.31248 6.39055 6.54470 6.60925 6.71323 6.79269 6.88170 7.25988 7.50480 8.05518 8.33224 8.37679 8.96957 9.68976 10.10491 11.13736 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.026953 B = 0.003699 C = 0.003613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.604808 B = 7566.840341 C = 7748.545494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.321 6.321 3 C 0.102 3.898 4 C -0.132 4.132 5 C -0.111 4.111 6 C 0.120 3.880 7 N -0.679 5.679 8 C 0.515 3.485 9 O -0.524 6.524 10 C -0.155 4.155 11 C 0.153 3.847 12 N -0.613 5.613 13 C 0.124 3.876 14 C -0.277 4.277 15 H 0.079 0.921 16 C 0.040 3.960 17 N -0.900 5.900 18 Si 0.878 3.122 19 H -0.279 1.279 20 H -0.301 1.301 21 H -0.269 1.269 22 C -0.085 4.085 23 C -0.187 4.187 24 H 0.055 0.945 25 H 0.054 0.946 26 H 0.097 0.903 27 H 0.132 0.868 28 H 0.133 0.867 29 H 0.411 0.589 30 H 0.103 0.897 31 H 0.088 0.912 32 H 0.046 0.954 33 H 0.062 0.938 34 H 0.010 0.990 35 H 0.039 0.961 36 H 0.030 0.970 37 H 0.264 0.736 38 H 0.141 0.859 39 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.136 -17.120 -12.457 22.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.234 6.234 3 C 0.057 3.943 4 C -0.151 4.151 5 C -0.132 4.132 6 C 0.026 3.974 7 N -0.325 5.325 8 C 0.305 3.695 9 O -0.399 6.399 10 C -0.198 4.198 11 C 0.027 3.973 12 N -0.337 5.337 13 C -0.021 4.021 14 C -0.405 4.405 15 H 0.096 0.904 16 C -0.162 4.162 17 N -0.541 5.541 18 Si 0.708 3.292 19 H -0.207 1.207 20 H -0.229 1.229 21 H -0.194 1.194 22 C -0.105 4.105 23 C -0.206 4.206 24 H 0.074 0.926 25 H 0.073 0.927 26 H 0.116 0.884 27 H 0.150 0.850 28 H 0.151 0.849 29 H 0.246 0.754 30 H 0.121 0.879 31 H 0.107 0.893 32 H 0.064 0.936 33 H 0.079 0.921 34 H 0.028 0.972 35 H 0.058 0.942 36 H 0.049 0.951 37 H 0.074 0.926 38 H 0.158 0.842 39 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -6.735 -17.288 -11.835 22.007 hybrid contribution -0.638 -0.123 0.308 0.719 sum -7.373 -17.411 -11.527 22.144 Atomic orbital electron populations 1.23028 0.78606 1.03689 1.01429 1.86049 1.21205 1.26981 1.89201 1.18975 0.92340 0.84079 0.98944 1.20155 0.91264 0.97957 1.05718 1.20722 0.99798 0.90396 1.02271 1.17769 0.91992 0.85185 1.02488 1.43819 1.24667 1.07864 1.56181 1.21517 0.84734 0.86575 0.76723 1.90672 1.24135 1.85133 1.39985 1.22447 1.03567 0.90149 1.03620 1.20951 0.93374 0.84241 0.98768 1.44090 1.50144 1.09880 1.29573 1.21100 0.97897 0.93213 0.89929 1.18771 0.99863 1.36171 0.85732 0.90369 1.25540 0.96798 0.97860 0.95975 1.69844 1.29938 1.49965 1.04347 0.86886 0.86937 0.78066 0.77291 1.20660 1.22885 1.19356 1.21051 0.93226 0.98205 0.98009 1.21129 1.00037 0.91783 1.07639 0.92639 0.92737 0.88420 0.84974 0.84925 0.75363 0.87854 0.89338 0.93573 0.92060 0.97180 0.94191 0.95108 0.92621 0.84168 0.85326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.20 16 2 O -0.32 -3.57 10.50 -19.64 -0.21 -3.78 16 3 C 0.10 1.24 6.69 -39.23 -0.26 0.98 16 4 C -0.13 -1.50 9.98 -39.45 -0.39 -1.90 16 5 C -0.11 -1.28 9.96 -39.41 -0.39 -1.67 16 6 C 0.12 1.65 6.32 -83.62 -0.53 1.12 16 7 N -0.68 -9.11 5.35 -9.83 -0.05 -9.16 16 8 C 0.52 8.86 7.59 -10.99 -0.08 8.78 16 9 O -0.52 -10.85 13.53 5.55 0.08 -10.77 16 10 C -0.16 -2.74 6.02 -27.89 -0.17 -2.91 16 11 C 0.15 3.40 3.74 -4.04 -0.02 3.39 16 12 N -0.61 -14.65 2.43 -181.12 -0.44 -15.09 16 13 C 0.12 2.45 10.69 59.84 0.64 3.09 16 14 C -0.28 -7.73 9.93 -15.06 -0.15 -7.88 16 15 H 0.08 2.33 8.06 -52.48 -0.42 1.91 16 16 C 0.04 1.15 5.33 -17.43 -0.09 1.06 16 17 N -0.90 -27.56 13.97 55.49 0.78 -26.78 16 18 Si 0.88 23.29 24.99 -169.99 -4.25 19.04 16 19 H -0.28 -7.48 6.71 56.52 0.38 -7.10 16 20 H -0.30 -7.99 7.11 56.52 0.40 -7.59 16 21 H -0.27 -7.05 7.11 56.52 0.40 -6.65 16 22 C -0.08 -1.22 8.66 -39.41 -0.34 -1.56 16 23 C -0.19 -2.32 9.03 -39.46 -0.36 -2.68 16 24 H 0.05 0.40 7.66 -51.93 -0.40 0.00 16 25 H 0.05 0.35 7.66 -51.93 -0.40 -0.04 16 26 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 28 H 0.13 1.19 8.06 -52.49 -0.42 0.76 16 29 H 0.41 4.09 8.81 -40.82 -0.36 3.73 16 30 H 0.10 1.90 8.14 -51.93 -0.42 1.48 16 31 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 32 H 0.05 0.97 8.03 -51.93 -0.42 0.56 16 33 H 0.06 1.55 3.42 -51.93 -0.18 1.38 16 34 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 35 H 0.04 0.76 8.08 -51.93 -0.42 0.34 16 36 H 0.03 0.51 8.03 -51.93 -0.42 0.09 16 37 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 38 H 0.14 2.20 6.27 -52.49 -0.33 1.87 16 39 H 0.13 1.33 6.29 -52.48 -0.33 1.00 16 LS Contribution 324.76 15.07 4.89 4.89 Total: -1.00 -34.25 324.76 -5.72 -39.97 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: -5.36 Total: 0.67 kcal Atomic # 6 Polarization: 2.16 SS G_CDS: -1.15 Total: 1.01 kcal Atomic # 7 Polarization: -51.32 SS G_CDS: 0.28 Total: -51.04 kcal Atomic # 8 Polarization: -14.42 SS G_CDS: -0.13 Total: -14.55 kcal Atomic # 14 Polarization: 23.29 SS G_CDS: -4.25 Total: 19.04 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -34.25 -5.72 -39.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103472642.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.702 kcal (2) G-P(sol) polarization free energy of solvation -34.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds