Wall clock time and date at job start Tue Mar 31 2020 01:37:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35970 * 116.99637 * 2 1 4 4 C 1.38726 * 119.98035 * 179.97438 * 3 2 1 5 5 C 1.38094 * 120.01366 * 180.29840 * 4 3 2 6 6 C 1.38851 * 119.98286 * 359.45089 * 5 4 3 7 7 N 1.40109 * 120.01609 * 180.25532 * 6 5 4 8 8 C 1.34776 * 120.00194 * 212.04038 * 7 6 5 9 9 O 1.21293 * 119.99648 * 4.52081 * 8 7 6 10 10 C 1.50694 * 120.00385 * 184.52958 * 8 7 6 11 11 C 1.53001 * 109.47406 * 179.97438 * 10 8 7 12 12 N 1.46500 * 109.47051 * 180.02562 * 11 10 8 13 13 C 1.46494 * 120.00683 * 89.99525 * 12 11 10 14 14 C 1.36938 * 119.99508 * 269.99393 * 12 11 10 15 15 H 1.08004 * 120.00070 * 139.37683 * 14 12 11 16 16 C 1.38813 * 120.00285 * 319.37698 * 14 12 11 17 17 N 1.31622 * 119.99871 * 160.51186 * 16 14 12 18 18 Si 1.86796 * 120.00073 * 340.52333 * 16 14 12 19 19 H 1.48500 * 109.47572 * 95.24701 * 18 16 14 20 20 H 1.48502 * 109.47135 * 215.25043 * 18 16 14 21 21 H 1.48502 * 109.46869 * 335.24640 * 18 16 14 22 22 C 1.38848 * 119.96994 * 0.54810 * 6 5 4 23 23 C 1.38093 * 119.98241 * 359.72719 * 22 6 5 24 24 H 1.09000 * 109.47296 * 300.00120 * 1 2 3 25 25 H 1.08999 * 109.46976 * 60.00229 * 1 2 3 26 26 H 1.09002 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.08000 * 119.99598 * 0.02562 * 4 3 2 28 28 H 1.07993 * 120.01094 * 179.70266 * 5 4 3 29 29 H 0.96994 * 119.99761 * 32.03867 * 7 6 5 30 30 H 1.09003 * 109.46856 * 300.00092 * 10 8 7 31 31 H 1.09006 * 109.47226 * 59.99136 * 10 8 7 32 32 H 1.09002 * 109.46586 * 299.99669 * 11 10 8 33 33 H 1.08996 * 109.47017 * 59.99404 * 11 10 8 34 34 H 1.09003 * 109.47066 * 95.02173 * 13 12 11 35 35 H 1.08992 * 109.47554 * 215.02596 * 13 12 11 36 36 H 1.09005 * 109.46977 * 335.02783 * 13 12 11 37 37 H 0.97001 * 119.99568 * 179.97438 * 17 16 14 38 38 H 1.07997 * 120.01078 * 179.70134 * 22 6 5 39 39 H 1.08005 * 119.99124 * 179.97438 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2115 0.0000 4 6 3.4316 1.2838 0.0005 5 6 4.0592 2.5138 0.0068 6 6 3.3033 3.6785 0.0010 7 7 3.9393 4.9269 0.0019 8 6 3.3606 5.9776 0.6164 9 8 2.3305 5.8245 1.2381 10 6 3.9932 7.3427 0.5308 11 6 3.1422 8.3489 1.3080 12 7 3.7569 9.6761 1.2243 13 6 3.3946 10.5837 0.1330 14 6 4.6703 10.0681 2.1662 15 1 5.5508 10.6182 1.8686 16 6 4.4646 9.7586 3.5037 17 7 5.4751 9.7785 4.3468 18 14 2.7536 9.3135 4.1068 19 1 2.5996 7.8365 4.1133 20 1 2.5621 9.8372 5.4832 21 1 1.7388 9.9130 3.2035 22 6 1.9167 3.6055 0.0004 23 6 1.2905 2.3747 -0.0001 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 4.0195 0.3778 0.0005 28 1 5.1376 2.5700 0.0120 29 1 4.7961 5.0350 -0.4397 30 1 4.9951 7.3063 0.9588 31 1 4.0553 7.6496 -0.5133 32 1 2.1406 8.3852 0.8795 33 1 3.0798 8.0421 2.3521 34 1 2.6053 11.2570 0.4673 35 1 4.2682 11.1655 -0.1609 36 1 3.0407 10.0039 -0.7195 37 1 5.3312 9.5625 5.2814 38 1 1.3281 4.5110 0.0008 39 1 0.2119 2.3177 -0.0001 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103472642.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:20 Heat of formation + Delta-G solvation = -42.028614 kcal Electronic energy + Delta-G solvation = -21122.898231 eV Core-core repulsion = 17838.031481 eV Total energy + Delta-G solvation = -3284.866750 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.79 seconds Orbital eigenvalues (eV) -41.69363 -40.58666 -38.49942 -37.65256 -35.42313 -33.93006 -32.30802 -32.02036 -30.00445 -28.15363 -27.92397 -25.95829 -24.09395 -23.13215 -22.51324 -21.35596 -19.22697 -18.84952 -18.58825 -17.94206 -17.41110 -17.03657 -16.62474 -16.25315 -15.79792 -15.57335 -15.27918 -14.97478 -14.74839 -14.47062 -14.36625 -14.08815 -13.78135 -13.73257 -13.39299 -13.26834 -12.83155 -12.79373 -12.48754 -12.36884 -12.27682 -11.92442 -11.84015 -11.52316 -11.09326 -10.78800 -10.70366 -10.02661 -8.76775 -8.72571 -8.25200 -5.67593 0.25839 0.32607 1.30262 1.35954 1.45813 1.55561 2.02083 2.37046 2.39294 2.77396 3.02936 3.36791 3.77307 3.88067 3.97167 4.15726 4.20877 4.23520 4.35038 4.37651 4.46097 4.55016 4.67541 4.71043 4.75839 4.86395 4.93885 5.00086 5.03242 5.15418 5.20517 5.30390 5.33948 5.42639 5.80506 5.92106 6.15903 6.40971 6.41636 6.95026 7.12302 7.58017 8.02299 8.93547 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.026953 B = 0.003699 C = 0.003613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.604808 B = 7566.840341 C = 7748.545494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.331 6.331 3 C 0.099 3.901 4 C -0.136 4.136 5 C -0.102 4.102 6 C 0.095 3.905 7 N -0.660 5.660 8 C 0.517 3.483 9 O -0.566 6.566 10 C -0.142 4.142 11 C 0.149 3.851 12 N -0.626 5.626 13 C 0.121 3.879 14 C -0.257 4.257 15 H 0.054 0.946 16 C -0.009 4.009 17 N -0.942 5.942 18 Si 0.934 3.066 19 H -0.289 1.289 20 H -0.304 1.304 21 H -0.264 1.264 22 C -0.104 4.104 23 C -0.193 4.193 24 H 0.056 0.944 25 H 0.063 0.937 26 H 0.122 0.878 27 H 0.155 0.845 28 H 0.161 0.839 29 H 0.428 0.572 30 H 0.095 0.905 31 H 0.123 0.877 32 H 0.057 0.943 33 H 0.027 0.973 34 H 0.009 0.991 35 H 0.045 0.955 36 H 0.068 0.932 37 H 0.263 0.737 38 H 0.120 0.880 39 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.543 -18.790 -14.278 24.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.245 6.245 3 C 0.054 3.946 4 C -0.154 4.154 5 C -0.122 4.122 6 C 0.001 3.999 7 N -0.306 5.306 8 C 0.306 3.694 9 O -0.444 6.444 10 C -0.184 4.184 11 C 0.023 3.977 12 N -0.351 5.351 13 C -0.023 4.023 14 C -0.387 4.387 15 H 0.071 0.929 16 C -0.206 4.206 17 N -0.586 5.586 18 Si 0.764 3.236 19 H -0.217 1.217 20 H -0.233 1.233 21 H -0.188 1.188 22 C -0.125 4.125 23 C -0.212 4.212 24 H 0.075 0.925 25 H 0.082 0.918 26 H 0.140 0.860 27 H 0.173 0.827 28 H 0.179 0.821 29 H 0.267 0.733 30 H 0.114 0.886 31 H 0.141 0.859 32 H 0.075 0.925 33 H 0.045 0.955 34 H 0.028 0.972 35 H 0.063 0.937 36 H 0.086 0.914 37 H 0.072 0.928 38 H 0.138 0.862 39 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -7.141 -18.984 -13.719 24.486 hybrid contribution -0.539 0.293 0.751 0.969 sum -7.680 -18.691 -12.968 24.011 Atomic orbital electron populations 1.23315 0.76804 1.05557 1.01945 1.86044 1.23125 1.26377 1.88918 1.19186 0.92921 0.84337 0.98191 1.20514 0.91324 0.98804 1.04807 1.21000 1.01104 0.89484 1.00569 1.17962 0.92081 0.85640 1.04220 1.43494 1.24936 1.07122 1.55075 1.21311 0.84241 0.87152 0.76667 1.90666 1.25988 1.85701 1.42040 1.22159 1.01797 0.89649 1.04791 1.20886 0.94707 0.84460 0.97635 1.44240 1.49613 1.11475 1.29742 1.21247 0.98199 0.93179 0.89712 1.18721 0.99531 1.34077 0.86377 0.92866 1.26017 0.98979 0.99158 0.96469 1.69931 1.31373 1.52679 1.04616 0.86003 0.83976 0.77055 0.76573 1.21691 1.23264 1.18846 1.21028 0.93782 0.98196 0.99443 1.21267 1.00990 0.91375 1.07583 0.92525 0.91811 0.85975 0.82745 0.82126 0.73310 0.88624 0.85875 0.92494 0.95456 0.97220 0.93659 0.91369 0.92762 0.86174 0.83894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.81 113.37 1.11 1.35 16 2 O -0.33 -6.67 10.50 -93.21 -0.98 -7.65 16 3 C 0.10 2.24 6.69 22.50 0.15 2.39 16 4 C -0.14 -2.75 9.98 22.35 0.22 -2.53 16 5 C -0.10 -2.08 9.96 22.38 0.22 -1.86 16 6 C 0.09 2.46 6.32 38.11 0.24 2.71 16 7 N -0.66 -16.55 5.35 -303.40 -1.62 -18.17 16 8 C 0.52 17.23 7.59 87.66 0.67 17.90 16 9 O -0.57 -23.43 13.53 -3.07 -0.04 -23.47 16 10 C -0.14 -4.77 6.02 29.85 0.18 -4.59 16 11 C 0.15 6.44 3.74 86.38 0.32 6.76 16 12 N -0.63 -29.08 2.43 -726.95 -1.77 -30.85 16 13 C 0.12 4.47 10.69 127.77 1.37 5.84 16 14 C -0.26 -14.37 9.93 84.03 0.83 -13.54 16 15 H 0.05 3.22 8.06 -2.91 -0.02 3.19 16 16 C -0.01 -0.52 5.33 84.86 0.45 -0.07 16 17 N -0.94 -58.85 13.97 21.65 0.30 -58.54 16 18 Si 0.93 49.20 24.99 68.60 1.71 50.91 16 19 H -0.29 -15.54 6.71 99.48 0.67 -14.87 16 20 H -0.30 -15.96 7.11 99.48 0.71 -15.25 16 21 H -0.26 -13.48 7.11 99.48 0.71 -12.77 16 22 C -0.10 -2.95 8.66 22.38 0.19 -2.76 16 23 C -0.19 -4.63 9.03 22.35 0.20 -4.42 16 24 H 0.06 0.72 7.66 -2.39 -0.02 0.70 16 25 H 0.06 0.70 7.66 -2.39 -0.02 0.69 16 26 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.15 2.40 8.06 -2.91 -0.02 2.37 16 28 H 0.16 2.30 8.06 -2.91 -0.02 2.27 16 29 H 0.43 7.43 8.81 -92.71 -0.82 6.61 16 30 H 0.10 3.40 8.14 -2.39 -0.02 3.38 16 31 H 0.12 3.26 8.14 -2.38 -0.02 3.24 16 32 H 0.06 2.32 8.03 -2.39 -0.02 2.30 16 33 H 0.03 1.38 3.42 -2.39 -0.01 1.37 16 34 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 35 H 0.04 1.62 8.08 -2.39 -0.02 1.60 16 36 H 0.07 2.02 8.03 -2.38 -0.02 2.00 16 37 H 0.26 15.71 8.31 -92.71 -0.77 14.94 16 38 H 0.12 3.86 6.27 -2.91 -0.02 3.84 16 39 H 0.14 2.83 6.29 -2.91 -0.02 2.81 16 Total: -1.00 -74.90 324.76 3.98 -70.92 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: 0.21 Total: 9.69 kcal Atomic # 6 Polarization: 1.00 SS G_CDS: 6.17 Total: 7.17 kcal Atomic # 7 Polarization: -104.48 SS G_CDS: -3.09 Total: -107.57 kcal Atomic # 8 Polarization: -30.10 SS G_CDS: -1.02 Total: -31.12 kcal Atomic # 14 Polarization: 49.20 SS G_CDS: 1.71 Total: 50.91 kcal Total: -74.90 3.98 -70.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103472642.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.894 kcal (2) G-P(sol) polarization free energy of solvation -74.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.79 seconds