Wall clock time and date at job start Tue Mar 31 2020 00:43:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42895 * 109.46954 * 2 1 4 4 C 1.35980 * 117.00165 * 179.97438 * 3 2 1 5 5 C 1.38708 * 119.98219 * 359.72683 * 4 3 2 6 6 C 1.38102 * 120.01423 * 179.76779 * 5 4 3 7 7 C 1.38837 * 119.98121 * 0.50214 * 6 5 4 8 8 N 1.40145 * 120.01146 * 179.72403 * 7 6 5 9 9 C 1.34777 * 120.00025 * 144.93898 * 8 7 6 10 10 O 1.21588 * 120.00151 * 4.58280 * 9 8 7 11 11 N 1.34777 * 119.99991 * 184.58841 * 9 8 7 12 12 C 1.46494 * 120.00139 * 359.97438 * 11 9 8 13 13 C 1.46507 * 119.99765 * 179.97438 * 11 9 8 14 14 C 1.50700 * 109.46775 * 90.00007 * 13 11 9 15 15 H 1.07997 * 120.00245 * 359.97438 * 14 13 11 16 16 C 1.37885 * 119.99696 * 179.97438 * 14 13 11 17 17 N 1.31515 * 119.99920 * 180.02562 * 16 14 13 18 18 Si 1.86798 * 119.99801 * 0.02562 * 16 14 13 19 19 H 1.48502 * 109.47325 * 90.00188 * 18 16 14 20 20 H 1.48504 * 109.46839 * 210.00143 * 18 16 14 21 21 H 1.48500 * 109.47329 * 329.99734 * 18 16 14 22 22 C 1.38833 * 119.97302 * 359.75470 * 7 6 5 23 23 C 1.38099 * 119.98552 * 359.97438 * 22 7 6 24 24 H 1.09000 * 109.47553 * 59.99888 * 1 2 3 25 25 H 1.09004 * 109.47095 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47428 * 299.99419 * 1 2 3 27 27 H 1.08998 * 109.47011 * 240.00267 * 2 1 3 28 28 H 1.08993 * 109.46914 * 120.00086 * 2 1 3 29 29 H 1.08005 * 119.99869 * 359.97438 * 5 4 3 30 30 H 1.07999 * 120.01028 * 180.25662 * 6 5 4 31 31 H 0.97005 * 120.00387 * 324.93239 * 8 7 6 32 32 H 1.09007 * 109.46821 * 90.00425 * 12 11 9 33 33 H 1.09003 * 109.47197 * 209.99410 * 12 11 9 34 34 H 1.08991 * 109.47360 * 330.00080 * 12 11 9 35 35 H 1.08997 * 109.46846 * 209.99736 * 13 11 9 36 36 H 1.09000 * 109.47194 * 330.00257 * 13 11 9 37 37 H 0.96991 * 119.99939 * 179.97438 * 17 16 14 38 38 H 1.07996 * 120.00431 * 179.97438 * 22 7 6 39 39 H 1.08003 * 119.99003 * 179.97438 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3544 1.5255 0.0005 5 6 4.1990 0.4253 0.0068 6 6 5.5682 0.6055 0.0025 7 6 6.0992 1.8883 0.0025 8 7 7.4885 2.0720 0.0040 9 6 8.0322 3.1071 -0.6664 10 8 7.3139 3.9286 -1.2027 11 7 9.3720 3.2316 -0.7425 12 6 10.2375 2.2421 -0.0960 13 6 9.9630 4.3565 -1.4717 14 6 10.1612 5.5166 -0.5305 15 1 9.8752 5.4253 0.5069 16 6 10.7077 6.6947 -0.9939 17 7 10.8812 7.7070 -0.1724 18 14 11.2016 6.8528 -2.7884 19 1 10.0516 7.3666 -3.5750 20 1 12.3428 7.7957 -2.9064 21 1 11.6032 5.5218 -3.3104 22 6 5.2531 2.9891 0.0016 23 6 3.8841 2.8075 0.0002 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5137 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 3.7859 -0.5727 0.0116 30 1 6.2258 -0.2512 0.0032 31 1 8.0590 1.4541 0.4876 32 1 10.4553 1.4365 -0.7973 33 1 11.1687 2.7187 0.2103 34 1 9.7325 1.8347 0.7798 35 1 10.9254 4.0558 -1.8855 36 1 9.2967 4.6550 -2.2811 37 1 11.2659 8.5355 -0.4983 38 1 5.6656 3.9872 0.0020 39 1 3.2259 3.6637 0.0000 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000107147757.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:43:26 Heat of formation + Delta-G solvation = -26.607131 kcal Electronic energy + Delta-G solvation = -21034.641570 eV Core-core repulsion = 17750.443546 eV Total energy + Delta-G solvation = -3284.198024 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.44695 -39.52479 -37.45203 -35.00984 -34.14796 -32.48307 -31.85917 -30.80564 -28.93550 -27.78543 -25.89374 -24.24826 -22.92073 -22.22898 -21.33949 -19.38460 -18.31508 -17.77945 -16.96190 -16.87085 -16.21520 -15.72413 -15.01880 -14.91428 -14.32216 -13.97658 -13.59131 -13.52662 -13.35702 -13.24300 -13.00256 -12.73026 -12.48167 -12.31619 -12.13792 -12.00203 -11.82948 -11.48361 -11.05443 -10.94018 -10.78114 -10.52247 -10.17210 -9.66093 -9.57001 -9.31829 -8.84019 -8.58264 -7.85564 -7.43516 -6.08120 -4.06969 1.44161 1.52827 3.07739 3.20938 3.30789 3.36566 3.38751 3.64954 4.03782 4.38586 4.41110 4.67650 4.69651 4.88872 4.93365 5.01771 5.23293 5.24604 5.40920 5.43413 5.51107 5.52047 5.74861 5.75006 5.78879 6.02563 6.08545 6.11352 6.35998 6.42765 6.65035 6.72422 6.88606 7.12907 7.24174 7.47126 7.48519 7.62297 8.45129 8.48054 8.94864 9.14691 9.52057 11.05318 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.033314 B = 0.003387 C = 0.003217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.294867 B = 8265.685565 C = 8701.369042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.055 3.945 3 O -0.319 6.319 4 C 0.102 3.898 5 C -0.191 4.191 6 C -0.116 4.116 7 C 0.142 3.858 8 N -0.694 5.694 9 C 0.700 3.300 10 O -0.569 6.569 11 N -0.608 5.608 12 C 0.084 3.916 13 C 0.230 3.770 14 C -0.530 4.530 15 H 0.074 0.926 16 C 0.072 3.928 17 N -0.897 5.897 18 Si 0.877 3.123 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.266 1.266 22 C -0.079 4.079 23 C -0.131 4.131 24 H 0.065 0.935 25 H 0.075 0.925 26 H 0.065 0.935 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.126 0.874 30 H 0.124 0.876 31 H 0.401 0.599 32 H 0.046 0.954 33 H 0.081 0.919 34 H 0.053 0.947 35 H 0.032 0.968 36 H 0.039 0.961 37 H 0.265 0.735 38 H 0.153 0.847 39 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.997 -19.166 1.413 23.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.233 6.233 4 C 0.057 3.943 5 C -0.211 4.211 6 C -0.138 4.138 7 C 0.047 3.953 8 N -0.345 5.345 9 C 0.402 3.598 10 O -0.445 6.445 11 N -0.343 5.343 12 C -0.060 4.060 13 C 0.109 3.891 14 C -0.568 4.568 15 H 0.092 0.908 16 C -0.130 4.130 17 N -0.536 5.536 18 Si 0.704 3.296 19 H -0.198 1.198 20 H -0.211 1.211 21 H -0.191 1.191 22 C -0.100 4.100 23 C -0.150 4.150 24 H 0.084 0.916 25 H 0.094 0.906 26 H 0.084 0.916 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.144 0.856 30 H 0.142 0.858 31 H 0.238 0.762 32 H 0.064 0.936 33 H 0.099 0.901 34 H 0.072 0.928 35 H 0.050 0.950 36 H 0.057 0.943 37 H 0.074 0.926 38 H 0.171 0.829 39 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -13.479 -18.186 0.982 22.658 hybrid contribution 0.812 -0.391 -0.546 1.054 sum -12.667 -18.576 0.436 22.489 Atomic orbital electron populations 1.21771 0.93010 1.02621 1.03512 1.22710 0.95652 0.82498 1.01172 1.86070 1.19318 1.28696 1.89259 1.18923 0.81961 0.94161 0.99269 1.20886 0.93435 0.97764 1.08993 1.20612 0.94669 0.95381 1.03097 1.17482 0.82575 0.93244 1.02027 1.42866 1.05163 1.31624 1.54801 1.15867 0.82916 0.81311 0.79683 1.90880 1.59595 1.42615 1.51446 1.47126 1.02828 1.28329 1.56059 1.21614 0.96360 0.91954 0.96093 1.19621 0.92963 0.83794 0.92684 1.21350 1.41595 0.96270 0.97613 0.90773 1.24855 0.95172 0.95420 0.97581 1.69895 1.44700 1.03818 1.35178 0.86845 0.78620 0.78448 0.85718 1.19849 1.21096 1.19067 1.21352 0.91465 1.00285 0.96864 1.20373 0.94796 0.94714 1.05116 0.91555 0.90591 0.91564 0.92258 0.92260 0.85622 0.85782 0.76197 0.93559 0.90063 0.92840 0.95015 0.94341 0.92552 0.82946 0.85067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 10.28 37.16 0.38 -0.61 16 2 C 0.06 0.47 5.46 37.16 0.20 0.67 16 3 O -0.32 -3.96 10.14 -19.68 -0.20 -4.16 16 4 C 0.10 1.39 6.69 -39.23 -0.26 1.13 16 5 C -0.19 -2.29 9.03 -39.46 -0.36 -2.64 16 6 C -0.12 -1.47 9.96 -39.41 -0.39 -1.86 16 7 C 0.14 2.24 6.30 -83.61 -0.53 1.72 16 8 N -0.69 -11.19 5.22 -14.19 -0.07 -11.26 16 9 C 0.70 14.69 8.12 -86.92 -0.71 13.99 16 10 O -0.57 -14.21 13.36 5.29 0.07 -14.13 16 11 N -0.61 -12.55 2.86 -188.74 -0.54 -13.09 16 12 C 0.08 1.25 10.24 59.84 0.61 1.86 16 13 C 0.23 5.62 4.23 -5.19 -0.02 5.60 16 14 C -0.53 -15.20 9.94 -34.44 -0.34 -15.54 16 15 H 0.07 2.34 8.06 -52.49 -0.42 1.92 16 16 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 17 N -0.90 -27.71 13.96 55.43 0.77 -26.94 16 18 Si 0.88 21.55 27.47 -169.99 -4.67 16.88 16 19 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 20 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 21 H -0.27 -6.13 6.54 56.52 0.37 -5.76 16 22 C -0.08 -1.36 8.69 -39.41 -0.34 -1.70 16 23 C -0.13 -1.97 9.98 -39.46 -0.39 -2.36 16 24 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.45 7.67 -51.93 -0.40 0.06 16 28 H 0.06 0.44 7.64 -51.93 -0.40 0.04 16 29 H 0.13 1.14 6.29 -52.48 -0.33 0.81 16 30 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 31 H 0.40 5.04 6.52 -40.82 -0.27 4.77 16 32 H 0.05 0.57 8.14 -51.92 -0.42 0.15 16 33 H 0.08 1.25 8.07 -51.93 -0.42 0.83 16 34 H 0.05 0.64 6.30 -51.93 -0.33 0.31 16 35 H 0.03 0.73 7.13 -51.93 -0.37 0.36 16 36 H 0.04 1.01 6.85 -51.93 -0.36 0.65 16 37 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 38 H 0.15 3.03 6.22 -52.49 -0.33 2.70 16 39 H 0.13 1.81 8.06 -52.48 -0.42 1.39 16 LS Contribution 325.90 15.07 4.91 4.91 Total: -1.00 -34.82 325.90 -7.29 -42.11 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -5.32 Total: 3.44 kcal Atomic # 6 Polarization: 4.49 SS G_CDS: -2.24 Total: 2.24 kcal Atomic # 7 Polarization: -51.45 SS G_CDS: 0.16 Total: -51.29 kcal Atomic # 8 Polarization: -18.17 SS G_CDS: -0.13 Total: -18.30 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.67 Total: 16.88 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -34.82 -7.29 -42.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107147757.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.505 kcal (2) G-P(sol) polarization free energy of solvation -34.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds