Wall clock time and date at job start Tue Mar 31 2020 00:28:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46501 * 109.46938 * 2 1 4 4 C 1.46500 * 119.99697 * 269.99772 * 3 2 1 5 5 C 1.53005 * 109.46976 * 270.00240 * 4 3 2 6 6 C 1.34778 * 119.99972 * 90.00532 * 3 2 1 7 7 O 1.21586 * 120.00006 * 359.97438 * 6 3 2 8 8 N 1.34770 * 119.99659 * 179.97438 * 6 3 2 9 9 C 1.40032 * 119.99927 * 175.43055 * 8 6 3 10 10 C 1.38907 * 120.00147 * 215.13443 * 9 8 6 11 11 C 1.38010 * 120.00106 * 180.02562 * 10 9 8 12 12 C 1.38905 * 119.99891 * 0.02562 * 11 10 9 13 13 O 1.35781 * 119.99769 * 179.97438 * 12 11 10 14 14 C 1.34807 * 117.00306 * 5.37979 * 13 12 11 15 15 H 1.08004 * 119.99958 * 354.95726 * 14 13 12 16 16 C 1.38624 * 120.00336 * 174.95880 * 14 13 12 17 17 N 1.31579 * 120.00382 * 179.97438 * 16 14 13 18 18 Si 1.86800 * 119.99843 * 359.97438 * 16 14 13 19 19 H 1.48498 * 109.47388 * 90.00092 * 18 16 14 20 20 H 1.48503 * 109.47358 * 209.99955 * 18 16 14 21 21 H 1.48498 * 109.47377 * 329.99811 * 18 16 14 22 22 C 1.38905 * 119.99944 * 0.24019 * 12 11 10 23 23 C 1.38012 * 120.00274 * 359.48073 * 22 12 11 24 24 H 1.08995 * 109.46796 * 59.99811 * 1 2 3 25 25 H 1.08998 * 109.47120 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46544 * 300.00135 * 1 2 3 27 27 H 1.08991 * 109.46909 * 239.99659 * 2 1 3 28 28 H 1.09005 * 109.46753 * 119.99646 * 2 1 3 29 29 H 1.08992 * 109.47154 * 30.00157 * 4 3 2 30 30 H 1.08997 * 109.47053 * 150.00788 * 4 3 2 31 31 H 1.08992 * 109.47111 * 299.99944 * 5 4 3 32 32 H 1.08996 * 109.47305 * 60.00384 * 5 4 3 33 33 H 1.09007 * 109.46656 * 180.02562 * 5 4 3 34 34 H 0.97001 * 120.00561 * 355.43012 * 8 6 3 35 35 H 1.08003 * 120.00303 * 359.97438 * 10 9 8 36 36 H 1.07993 * 120.00243 * 179.97438 * 11 10 9 37 37 H 0.96997 * 119.99680 * 179.97438 * 17 16 14 38 38 H 1.08004 * 119.99741 * 179.72209 * 22 12 11 39 39 H 1.07994 * 120.00117 * 180.23401 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.7076 1.8313 -1.7104 6 6 2.2431 2.0166 1.1672 7 8 2.0401 1.4435 2.2202 8 7 2.6927 3.2870 1.1671 9 6 2.8351 3.9794 2.3760 10 6 2.5765 5.3431 2.4299 11 6 2.7174 6.0256 3.6212 12 6 3.1183 5.3489 4.7661 13 8 3.2574 6.0204 5.9379 14 6 2.8846 7.3159 5.9490 15 1 2.5730 7.7960 5.0331 16 6 2.9012 8.0319 7.1359 17 7 2.5378 9.2964 7.1466 18 14 3.4395 7.2014 8.7202 19 1 4.9057 7.3638 8.8908 20 1 2.7354 7.8244 9.8697 21 1 3.1053 5.7558 8.6596 22 6 3.3823 3.9862 4.7108 23 6 3.2359 3.3026 3.5209 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3632 0.5139 0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 1.5818 1.6876 -2.0283 30 1 2.0956 3.1410 -1.1385 31 1 4.3883 2.2154 -0.9508 32 1 3.8745 0.7621 -1.8407 33 1 3.8893 2.3455 -2.6542 34 1 2.9178 3.7219 0.3298 35 1 2.2660 5.8696 1.5395 36 1 2.5167 7.0859 3.6631 37 1 2.5491 9.7972 7.9772 38 1 3.6983 3.4610 5.6000 39 1 3.4374 2.2425 3.4789 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000112835719.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:28:29 Heat of formation + Delta-G solvation = -20.165914 kcal Electronic energy + Delta-G solvation = -21240.340855 eV Core-core repulsion = 17956.422143 eV Total energy + Delta-G solvation = -3283.918712 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.59772 -38.98588 -37.11856 -35.97073 -34.17634 -32.34629 -32.01742 -30.24519 -29.76729 -27.78677 -25.22391 -23.87236 -23.44632 -22.27858 -21.11389 -19.64737 -18.33567 -17.80016 -17.35369 -16.79902 -15.83296 -15.32496 -14.81803 -14.49802 -14.25922 -14.01433 -13.76478 -13.76191 -13.59562 -13.14730 -12.84371 -12.72221 -12.34169 -12.26655 -12.24312 -11.97581 -11.80095 -11.57985 -11.43134 -11.15931 -10.92558 -10.70975 -10.16811 -9.90917 -9.61865 -9.24874 -8.87664 -8.70688 -8.23812 -6.98910 -6.38196 -4.03933 2.10531 2.19300 2.60461 3.24048 3.28676 3.30608 3.44945 3.86765 4.27724 4.53256 4.54786 4.78878 4.82493 4.92869 5.00374 5.14497 5.15763 5.23045 5.34699 5.41225 5.52584 5.55902 5.71238 5.78979 5.82616 6.03674 6.08859 6.15130 6.22659 6.40694 6.70112 6.76256 6.83831 7.16202 7.17411 7.27926 7.64802 7.82202 7.96798 8.07013 8.65978 8.97531 9.60834 10.69559 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.036448 B = 0.003443 C = 0.003317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.030570 B = 8131.511677 C = 8439.120779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.130 3.870 3 N -0.631 5.631 4 C 0.104 3.896 5 C -0.175 4.175 6 C 0.702 3.298 7 O -0.574 6.574 8 N -0.676 5.676 9 C 0.063 3.937 10 C -0.095 4.095 11 C -0.206 4.206 12 C 0.151 3.849 13 O -0.218 6.218 14 C -0.388 4.388 15 H 0.106 0.894 16 C 0.063 3.937 17 N -0.882 5.882 18 Si 0.905 3.095 19 H -0.274 1.274 20 H -0.283 1.283 21 H -0.259 1.259 22 C -0.177 4.177 23 C -0.070 4.070 24 H 0.052 0.948 25 H 0.064 0.936 26 H 0.061 0.939 27 H 0.073 0.927 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.074 0.926 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.067 0.933 34 H 0.398 0.602 35 H 0.112 0.888 36 H 0.137 0.863 37 H 0.279 0.721 38 H 0.120 0.880 39 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.168 -14.691 -18.416 23.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.007 3.993 3 N -0.369 5.369 4 C -0.019 4.019 5 C -0.233 4.233 6 C 0.404 3.596 7 O -0.451 6.451 8 N -0.324 5.324 9 C -0.030 4.030 10 C -0.116 4.116 11 C -0.225 4.225 12 C 0.098 3.902 13 O -0.123 6.123 14 C -0.464 4.464 15 H 0.123 0.877 16 C -0.140 4.140 17 N -0.520 5.520 18 Si 0.731 3.269 19 H -0.199 1.199 20 H -0.209 1.209 21 H -0.183 1.183 22 C -0.197 4.197 23 C -0.090 4.090 24 H 0.071 0.929 25 H 0.083 0.917 26 H 0.080 0.920 27 H 0.091 0.909 28 H 0.103 0.897 29 H 0.099 0.901 30 H 0.092 0.908 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.234 0.766 35 H 0.130 0.870 36 H 0.155 0.845 37 H 0.089 0.911 38 H 0.138 0.862 39 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -0.293 -15.003 -17.305 22.905 hybrid contribution 0.187 0.244 0.029 0.309 sum -0.106 -14.759 -17.276 22.722 Atomic orbital electron populations 1.22159 0.96159 1.01991 1.02406 1.21250 0.94084 0.81103 1.02869 1.47243 1.70441 1.14876 1.04388 1.21494 0.96975 0.97436 0.86030 1.22260 0.96698 1.02607 1.01772 1.15908 0.78234 0.81555 0.83884 1.90912 1.58547 1.66032 1.29561 1.42502 1.68585 1.12732 1.08624 1.17127 1.09096 0.91152 0.85652 1.20503 1.00864 0.92460 0.97729 1.21067 1.08253 1.01292 0.91915 1.19146 0.93832 0.91083 0.86091 1.83582 1.74239 1.25314 1.29193 1.20752 1.45204 0.82231 0.98188 0.87672 1.24455 0.95983 0.94982 0.98608 1.69657 1.45920 1.07592 1.28838 0.86181 0.78971 0.80661 0.81123 1.19911 1.20875 1.18274 1.20154 1.09521 0.91630 0.98407 1.20776 0.97446 0.99778 0.91008 0.92873 0.91745 0.91954 0.90899 0.89749 0.90088 0.90798 0.92159 0.92145 0.91370 0.76629 0.87039 0.84529 0.91116 0.86190 0.85010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.47 10.24 37.16 0.38 -1.09 16 2 C 0.13 1.19 6.13 -4.04 -0.02 1.17 16 3 N -0.63 -6.66 2.47 -179.42 -0.44 -7.10 16 4 C 0.10 0.73 5.85 -4.04 -0.02 0.70 16 5 C -0.17 -1.08 10.24 37.16 0.38 -0.70 16 6 C 0.70 10.40 8.12 -86.92 -0.71 9.70 16 7 O -0.57 -10.76 13.36 5.29 0.07 -10.68 16 8 N -0.68 -9.54 5.18 -14.18 -0.07 -9.62 16 9 C 0.06 1.12 6.30 -83.62 -0.53 0.59 16 10 C -0.09 -1.72 9.96 -39.42 -0.39 -2.11 16 11 C -0.21 -4.44 9.16 -39.42 -0.36 -4.80 16 12 C 0.15 3.56 6.65 -39.09 -0.26 3.30 16 13 O -0.22 -5.85 8.58 0.02 0.00 -5.85 16 14 C -0.39 -11.02 9.94 30.87 0.31 -10.71 16 15 H 0.11 3.02 5.43 -52.48 -0.28 2.74 16 16 C 0.06 1.77 5.49 -17.52 -0.10 1.68 16 17 N -0.88 -25.65 13.96 55.48 0.77 -24.87 16 18 Si 0.91 22.00 28.62 -169.99 -4.86 17.14 16 19 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.26 -6.35 7.11 56.52 0.40 -5.95 16 22 C -0.18 -3.76 9.99 -39.42 -0.39 -4.15 16 23 C -0.07 -1.36 8.69 -39.42 -0.34 -1.71 16 24 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.07 0.47 8.07 -51.93 -0.42 0.05 16 28 H 0.08 0.92 7.42 -51.93 -0.39 0.54 16 29 H 0.08 0.43 8.07 -51.93 -0.42 0.01 16 30 H 0.07 0.48 6.44 -51.93 -0.33 0.15 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.40 4.28 6.62 -40.82 -0.27 4.01 16 35 H 0.11 1.66 8.06 -52.48 -0.42 1.23 16 36 H 0.14 3.05 5.63 -52.49 -0.30 2.76 16 37 H 0.28 7.50 8.31 -40.82 -0.34 7.16 16 38 H 0.12 2.39 8.06 -52.48 -0.42 1.97 16 39 H 0.13 2.55 6.22 -52.49 -0.33 2.22 16 LS Contribution 327.42 15.07 4.93 4.93 Total: -1.00 -32.54 327.42 -6.91 -39.45 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: -5.25 Total: 4.75 kcal Atomic # 6 Polarization: -6.08 SS G_CDS: -2.06 Total: -8.14 kcal Atomic # 7 Polarization: -41.85 SS G_CDS: 0.26 Total: -41.59 kcal Atomic # 8 Polarization: -16.61 SS G_CDS: 0.07 Total: -16.53 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.86 Total: 17.14 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -32.54 -6.91 -39.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112835719.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.283 kcal (2) G-P(sol) polarization free energy of solvation -32.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds