Wall clock time and date at job start Tue Mar 31 2020 00:28:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46501 * 109.46938 * 2 1 4 4 C 1.46500 * 119.99697 * 269.99772 * 3 2 1 5 5 C 1.53005 * 109.46976 * 270.00240 * 4 3 2 6 6 C 1.34778 * 119.99972 * 90.00532 * 3 2 1 7 7 O 1.21586 * 120.00006 * 359.97438 * 6 3 2 8 8 N 1.34770 * 119.99659 * 179.97438 * 6 3 2 9 9 C 1.40032 * 119.99927 * 175.43055 * 8 6 3 10 10 C 1.38907 * 120.00147 * 215.13443 * 9 8 6 11 11 C 1.38010 * 120.00106 * 180.02562 * 10 9 8 12 12 C 1.38905 * 119.99891 * 0.02562 * 11 10 9 13 13 O 1.35781 * 119.99769 * 179.97438 * 12 11 10 14 14 C 1.34807 * 117.00306 * 5.37979 * 13 12 11 15 15 H 1.08004 * 119.99958 * 354.95726 * 14 13 12 16 16 C 1.38624 * 120.00336 * 174.95880 * 14 13 12 17 17 N 1.31579 * 120.00382 * 179.97438 * 16 14 13 18 18 Si 1.86800 * 119.99843 * 359.97438 * 16 14 13 19 19 H 1.48498 * 109.47388 * 90.00092 * 18 16 14 20 20 H 1.48503 * 109.47358 * 209.99955 * 18 16 14 21 21 H 1.48498 * 109.47377 * 329.99811 * 18 16 14 22 22 C 1.38905 * 119.99944 * 0.24019 * 12 11 10 23 23 C 1.38012 * 120.00274 * 359.48073 * 22 12 11 24 24 H 1.08995 * 109.46796 * 59.99811 * 1 2 3 25 25 H 1.08998 * 109.47120 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46544 * 300.00135 * 1 2 3 27 27 H 1.08991 * 109.46909 * 239.99659 * 2 1 3 28 28 H 1.09005 * 109.46753 * 119.99646 * 2 1 3 29 29 H 1.08992 * 109.47154 * 30.00157 * 4 3 2 30 30 H 1.08997 * 109.47053 * 150.00788 * 4 3 2 31 31 H 1.08992 * 109.47111 * 299.99944 * 5 4 3 32 32 H 1.08996 * 109.47305 * 60.00384 * 5 4 3 33 33 H 1.09007 * 109.46656 * 180.02562 * 5 4 3 34 34 H 0.97001 * 120.00561 * 355.43012 * 8 6 3 35 35 H 1.08003 * 120.00303 * 359.97438 * 10 9 8 36 36 H 1.07993 * 120.00243 * 179.97438 * 11 10 9 37 37 H 0.96997 * 119.99680 * 179.97438 * 17 16 14 38 38 H 1.08004 * 119.99741 * 179.72209 * 22 12 11 39 39 H 1.07994 * 120.00117 * 180.23401 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.7076 1.8313 -1.7104 6 6 2.2431 2.0166 1.1672 7 8 2.0401 1.4435 2.2202 8 7 2.6927 3.2870 1.1671 9 6 2.8351 3.9794 2.3760 10 6 2.5765 5.3431 2.4299 11 6 2.7174 6.0256 3.6212 12 6 3.1183 5.3489 4.7661 13 8 3.2574 6.0204 5.9379 14 6 2.8846 7.3159 5.9490 15 1 2.5730 7.7960 5.0331 16 6 2.9012 8.0319 7.1359 17 7 2.5378 9.2964 7.1466 18 14 3.4395 7.2014 8.7202 19 1 4.9057 7.3638 8.8908 20 1 2.7354 7.8244 9.8697 21 1 3.1053 5.7558 8.6596 22 6 3.3823 3.9862 4.7108 23 6 3.2359 3.3026 3.5209 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3632 0.5139 0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 1.5818 1.6876 -2.0283 30 1 2.0956 3.1410 -1.1385 31 1 4.3883 2.2154 -0.9508 32 1 3.8745 0.7621 -1.8407 33 1 3.8893 2.3455 -2.6542 34 1 2.9178 3.7219 0.3298 35 1 2.2660 5.8696 1.5395 36 1 2.5167 7.0859 3.6631 37 1 2.5491 9.7972 7.9772 38 1 3.6983 3.4610 5.6000 39 1 3.4374 2.2425 3.4789 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000112835719.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:28:27 Heat of formation + Delta-G solvation = -40.487555 kcal Electronic energy + Delta-G solvation = -21241.222068 eV Core-core repulsion = 17956.422143 eV Total energy + Delta-G solvation = -3284.799925 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -41.81038 -40.65843 -38.60348 -37.11410 -35.54369 -34.35751 -32.79975 -31.88635 -30.70051 -29.24058 -27.15340 -24.57043 -24.42649 -23.91530 -22.58676 -20.90719 -19.74604 -19.31963 -19.03547 -18.12833 -16.89756 -16.62057 -16.41432 -15.88227 -15.65718 -15.52459 -15.19389 -14.84644 -14.67309 -14.44235 -14.16964 -14.11849 -13.85370 -13.43509 -13.40421 -13.21771 -12.93526 -12.75769 -12.59701 -12.48569 -12.04669 -11.99381 -11.87906 -11.44255 -11.26083 -10.97813 -10.62596 -9.86379 -9.73917 -8.62767 -8.48163 -6.19075 0.49375 0.54479 1.32787 1.36306 1.53095 1.58486 2.07513 2.29833 2.78146 2.87855 3.04306 3.19084 3.99700 4.02426 4.11816 4.14415 4.23360 4.46368 4.47815 4.49780 4.56247 4.57870 4.73583 4.77339 4.89131 5.00097 5.02941 5.09504 5.16542 5.30092 5.37037 5.37618 5.50505 5.56035 5.64522 5.78033 5.90078 5.95840 6.22294 6.86656 6.88945 7.50539 7.61487 8.63210 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.036448 B = 0.003443 C = 0.003317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.030570 B = 8131.511677 C = 8439.120779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.125 3.875 3 N -0.621 5.621 4 C 0.097 3.903 5 C -0.170 4.170 6 C 0.695 3.305 7 O -0.618 6.618 8 N -0.666 5.666 9 C 0.090 3.910 10 C -0.087 4.087 11 C -0.212 4.212 12 C 0.113 3.887 13 O -0.245 6.245 14 C -0.397 4.397 15 H 0.087 0.913 16 C 0.012 3.988 17 N -0.922 5.922 18 Si 0.966 3.034 19 H -0.265 1.265 20 H -0.268 1.268 21 H -0.266 1.266 22 C -0.176 4.176 23 C -0.076 4.076 24 H 0.068 0.932 25 H 0.081 0.919 26 H 0.026 0.974 27 H 0.110 0.890 28 H 0.061 0.939 29 H 0.108 0.892 30 H 0.081 0.919 31 H 0.042 0.958 32 H 0.061 0.939 33 H 0.089 0.911 34 H 0.418 0.582 35 H 0.153 0.847 36 H 0.123 0.877 37 H 0.284 0.716 38 H 0.126 0.874 39 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.148 -16.516 -21.275 26.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.003 3.997 3 N -0.358 5.358 4 C -0.025 4.025 5 C -0.229 4.229 6 C 0.397 3.603 7 O -0.498 6.498 8 N -0.316 5.316 9 C -0.005 4.005 10 C -0.107 4.107 11 C -0.231 4.231 12 C 0.063 3.937 13 O -0.153 6.153 14 C -0.474 4.474 15 H 0.104 0.896 16 C -0.187 4.187 17 N -0.563 5.563 18 Si 0.789 3.211 19 H -0.190 1.190 20 H -0.193 1.193 21 H -0.191 1.191 22 C -0.196 4.196 23 C -0.097 4.097 24 H 0.087 0.913 25 H 0.100 0.900 26 H 0.046 0.954 27 H 0.128 0.872 28 H 0.079 0.921 29 H 0.126 0.874 30 H 0.099 0.901 31 H 0.061 0.939 32 H 0.080 0.920 33 H 0.108 0.892 34 H 0.257 0.743 35 H 0.170 0.830 36 H 0.141 0.859 37 H 0.094 0.906 38 H 0.144 0.856 39 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -0.270 -16.860 -20.275 26.370 hybrid contribution 0.139 0.566 0.543 0.797 sum -0.131 -16.294 -19.732 25.590 Atomic orbital electron populations 1.22105 0.95727 1.02884 1.01373 1.21439 0.94395 0.80344 1.03546 1.47365 1.68887 1.15248 1.04284 1.21828 0.98245 0.97728 0.84700 1.22221 0.95482 1.02962 1.02199 1.16155 0.78082 0.81408 0.84615 1.90889 1.60303 1.66954 1.31677 1.42338 1.68481 1.12679 1.08125 1.17224 1.05575 0.91182 0.86515 1.20765 0.99559 0.92548 0.97815 1.21124 1.08305 1.00882 0.92815 1.19568 0.95992 0.92050 0.86067 1.83528 1.76416 1.24505 1.30835 1.20744 1.45450 0.83264 0.97913 0.89579 1.25213 0.96289 0.95574 1.01599 1.69729 1.47892 1.08783 1.29927 0.85274 0.79050 0.79057 0.77719 1.18975 1.19275 1.19074 1.20315 1.08936 0.90814 0.99498 1.20908 0.97630 0.99968 0.91145 0.91271 0.90028 0.95423 0.87218 0.92051 0.87359 0.90050 0.93890 0.91972 0.89235 0.74266 0.82967 0.85930 0.90618 0.85570 0.84619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.45 10.24 71.98 0.74 -1.72 16 2 C 0.13 1.96 6.13 86.38 0.53 2.49 16 3 N -0.62 -11.27 2.47 -839.83 -2.08 -13.35 16 4 C 0.10 0.94 5.85 86.38 0.51 1.44 16 5 C -0.17 -1.44 10.24 71.98 0.74 -0.70 16 6 C 0.70 19.21 8.12 179.06 1.45 20.66 16 7 O -0.62 -22.72 13.36 -3.99 -0.05 -22.77 16 8 N -0.67 -16.96 5.18 -317.05 -1.64 -18.60 16 9 C 0.09 3.02 6.30 38.15 0.24 3.26 16 10 C -0.09 -2.96 9.96 22.38 0.22 -2.74 16 11 C -0.21 -9.23 9.16 22.38 0.20 -9.02 16 12 C 0.11 5.45 6.65 22.59 0.15 5.60 16 13 O -0.25 -13.63 8.58 -22.86 -0.20 -13.83 16 14 C -0.40 -23.54 9.94 67.91 0.68 -22.86 16 15 H 0.09 5.24 5.43 -2.91 -0.02 5.23 16 16 C 0.01 0.68 5.49 84.82 0.47 1.15 16 17 N -0.92 -55.27 13.96 21.61 0.30 -54.97 16 18 Si 0.97 46.32 28.62 68.60 1.96 48.28 16 19 H -0.26 -12.17 7.11 99.48 0.71 -11.46 16 20 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 21 H -0.27 -12.93 7.11 99.48 0.71 -12.22 16 22 C -0.18 -7.53 9.99 22.38 0.22 -7.30 16 23 C -0.08 -2.92 8.69 22.38 0.19 -2.72 16 24 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 25 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 26 H 0.03 0.60 8.14 -2.39 -0.02 0.59 16 27 H 0.11 0.95 8.07 -2.39 -0.02 0.93 16 28 H 0.06 1.27 7.42 -2.38 -0.02 1.25 16 29 H 0.11 0.55 8.07 -2.39 -0.02 0.53 16 30 H 0.08 0.69 6.44 -2.39 -0.02 0.68 16 31 H 0.04 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.09 0.42 8.14 -2.38 -0.02 0.40 16 34 H 0.42 7.40 6.62 -92.71 -0.61 6.79 16 35 H 0.15 3.96 8.06 -2.91 -0.02 3.94 16 36 H 0.12 5.69 5.63 -2.91 -0.02 5.68 16 37 H 0.28 15.64 8.31 -92.71 -0.77 14.87 16 38 H 0.13 5.11 8.06 -2.91 -0.02 5.09 16 39 H 0.14 5.17 6.22 -2.91 -0.02 5.15 16 Total: -1.00 -73.92 327.42 5.09 -68.84 By element: Atomic # 1 Polarization: 18.43 SS G_CDS: 0.45 Total: 18.88 kcal Atomic # 6 Polarization: -18.82 SS G_CDS: 6.34 Total: -12.48 kcal Atomic # 7 Polarization: -83.50 SS G_CDS: -3.42 Total: -86.92 kcal Atomic # 8 Polarization: -36.35 SS G_CDS: -0.25 Total: -36.60 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 1.96 Total: 48.28 kcal Total: -73.92 5.09 -68.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112835719.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.347 kcal (2) G-P(sol) polarization free energy of solvation -73.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds