Wall clock time and date at job start Tue Mar 31 2020 01:37:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46901 * 110.99957 * 2 1 4 4 C 1.46903 * 111.00073 * 123.95135 * 2 1 3 5 5 C 1.50700 * 109.46914 * 66.04313 * 4 2 1 6 6 O 1.21274 * 120.00375 * 0.02562 * 5 4 2 7 7 N 1.34783 * 119.99813 * 179.97438 * 5 4 2 8 8 C 1.46500 * 120.00093 * 180.02562 * 7 5 4 9 9 C 1.50699 * 109.47192 * 180.02562 * 8 7 5 10 10 C 1.38328 * 119.96230 * 269.98024 * 9 8 7 11 11 C 1.38281 * 120.13505 * 180.02562 * 10 9 8 12 12 C 1.38120 * 120.06679 * 359.68445 * 11 10 9 13 13 C 1.38852 * 119.93490 * 0.58817 * 12 11 10 14 14 O 1.35752 * 120.07221 * 179.70368 * 13 12 11 15 15 C 1.34829 * 116.99954 * 354.17311 * 14 13 12 16 16 H 1.07998 * 119.99999 * 5.03596 * 15 14 13 17 17 C 1.38656 * 119.99670 * 185.03445 * 15 14 13 18 18 N 1.31550 * 120.00275 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99668 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46814 * 90.00164 * 19 17 15 21 21 H 1.48501 * 109.47378 * 210.00272 * 19 17 15 22 22 H 1.48503 * 109.47143 * 330.00397 * 19 17 15 23 23 C 1.38073 * 119.96534 * 89.99825 * 9 8 7 24 24 H 1.09000 * 109.47501 * 296.04751 * 1 2 3 25 25 H 1.09002 * 109.47263 * 56.05121 * 1 2 3 26 26 H 1.09003 * 109.47350 * 176.05027 * 1 2 3 27 27 H 1.09007 * 109.47073 * 183.95622 * 3 2 1 28 28 H 1.09002 * 109.46699 * 303.94767 * 3 2 1 29 29 H 1.08994 * 109.47540 * 63.95089 * 3 2 1 30 30 H 1.09008 * 109.46658 * 306.04681 * 4 2 1 31 31 H 1.08998 * 109.47555 * 186.04918 * 4 2 1 32 32 H 0.97004 * 119.99718 * 0.02562 * 7 5 4 33 33 H 1.09002 * 109.46490 * 60.00223 * 8 7 5 34 34 H 1.08992 * 109.46880 * 300.00477 * 8 7 5 35 35 H 1.08001 * 119.93314 * 0.02562 * 10 9 8 36 36 H 1.07993 * 119.96315 * 179.97438 * 11 10 9 37 37 H 1.08001 * 120.03256 * 180.31909 * 12 11 10 38 38 H 0.96999 * 119.99936 * 179.97438 * 18 17 15 39 39 H 1.07996 * 120.03547 * 0.02562 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7659 1.1376 5 6 1.6368 -2.2204 0.9730 6 8 1.0054 -2.5832 0.0033 7 7 2.0188 -3.1181 1.9029 8 6 1.6707 -4.5321 1.7426 9 6 2.2107 -5.3178 2.9097 10 6 3.4807 -5.8624 2.8475 11 6 3.9796 -6.5844 3.9161 12 6 3.2130 -6.7584 5.0519 13 6 1.9356 -6.2178 5.1151 14 8 1.1775 -6.3922 6.2277 15 6 1.6739 -7.2001 7.1862 16 1 2.6683 -7.6094 7.0858 17 6 0.9077 -7.5054 8.3008 18 7 -0.3037 -7.0073 8.4228 19 14 1.5952 -8.6253 9.6284 20 1 2.3034 -7.8089 10.6468 21 1 0.4832 -9.3674 10.2749 22 1 2.5457 -9.5900 9.0190 23 6 1.4371 -5.4936 4.0398 24 1 -0.3634 0.4513 0.9233 25 1 -0.3634 0.5739 -0.8525 26 1 -0.3634 -1.0252 -0.0708 27 1 3.0828 1.3432 -0.0709 28 1 1.5898 1.9162 -0.8525 29 1 1.7043 1.8724 0.9232 30 1 1.5610 -0.3871 2.0628 31 1 3.0797 -0.6611 1.1757 32 1 2.5242 -2.8279 2.6784 33 1 2.1051 -4.9104 0.8173 34 1 0.5865 -4.6372 1.7047 35 1 4.0840 -5.7234 1.9625 36 1 4.9713 -7.0087 3.8645 37 1 3.6051 -7.3181 5.8882 38 1 -0.8398 -7.2212 9.2024 39 1 0.4453 -5.0687 4.0874 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113441697.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:45 Heat of formation + Delta-G solvation = -28.956104 kcal Electronic energy + Delta-G solvation = -20615.867200 eV Core-core repulsion = 17331.567317 eV Total energy + Delta-G solvation = -3284.299884 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.90806 -39.08220 -37.14355 -36.51995 -34.45028 -32.36225 -31.05037 -29.32673 -28.57450 -27.70185 -25.82856 -25.03515 -22.52708 -21.72850 -20.82794 -20.34762 -17.95449 -17.29593 -16.84346 -16.11668 -15.92054 -15.24009 -14.99421 -14.85602 -14.61434 -14.38846 -14.27833 -13.65425 -13.56651 -12.99118 -12.83960 -12.58846 -12.44311 -12.35701 -12.07517 -11.87942 -11.72946 -11.54738 -11.39685 -10.95204 -10.84795 -10.72602 -10.49668 -9.79127 -9.43465 -8.97586 -8.91286 -8.55779 -8.25719 -7.35431 -6.51463 -4.11082 1.87584 2.24471 2.68342 3.07343 3.09540 3.14345 3.20575 3.89733 3.90625 4.47180 4.75061 4.87157 4.92907 5.04415 5.06515 5.09337 5.16365 5.27156 5.42378 5.43459 5.52240 5.58441 5.73249 5.82739 5.90781 5.96972 6.05509 6.22809 6.50036 6.53258 6.65511 6.78439 6.79268 6.97195 7.16478 7.24967 7.33143 7.58816 7.69409 7.92660 8.29866 8.93941 9.62372 10.66307 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.028219 B = 0.003049 C = 0.002884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.002751 B = 9182.630328 C = 9704.855898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.530 5.530 3 C 0.024 3.976 4 C 0.034 3.966 5 C 0.512 3.488 6 O -0.528 6.528 7 N -0.723 5.723 8 C 0.169 3.831 9 C -0.073 4.073 10 C -0.195 4.195 11 C -0.076 4.076 12 C -0.226 4.226 13 C 0.150 3.850 14 O -0.176 6.176 15 C -0.394 4.394 16 H 0.092 0.908 17 C 0.040 3.960 18 N -0.861 5.861 19 Si 0.941 3.059 20 H -0.273 1.273 21 H -0.277 1.277 22 H -0.267 1.267 23 C -0.171 4.171 24 H 0.021 0.979 25 H 0.066 0.934 26 H 0.090 0.910 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.026 0.974 30 H 0.065 0.935 31 H 0.104 0.896 32 H 0.402 0.598 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.107 0.893 36 H 0.109 0.891 37 H 0.128 0.872 38 H 0.271 0.729 39 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.169 10.880 -10.627 16.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.254 5.254 3 C -0.124 4.124 4 C -0.097 4.097 5 C 0.297 3.703 6 O -0.404 6.404 7 N -0.375 5.375 8 C 0.047 3.953 9 C -0.074 4.074 10 C -0.215 4.215 11 C -0.094 4.094 12 C -0.246 4.246 13 C 0.097 3.903 14 O -0.080 6.080 15 C -0.470 4.470 16 H 0.110 0.890 17 C -0.165 4.165 18 N -0.496 5.496 19 Si 0.766 3.234 20 H -0.198 1.198 21 H -0.202 1.202 22 H -0.192 1.192 23 C -0.191 4.191 24 H 0.039 0.961 25 H 0.085 0.915 26 H 0.108 0.892 27 H 0.088 0.912 28 H 0.090 0.910 29 H 0.044 0.956 30 H 0.083 0.917 31 H 0.122 0.878 32 H 0.237 0.763 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.125 0.875 36 H 0.127 0.873 37 H 0.145 0.855 38 H 0.081 0.919 39 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 5.424 10.461 -11.532 16.487 hybrid contribution 0.431 -0.097 1.931 1.981 sum 5.855 10.364 -9.600 15.293 Atomic orbital electron populations 1.22589 0.86369 1.04291 0.99847 1.61649 1.09058 1.13223 1.41503 1.22427 1.00809 0.88410 1.00726 1.22019 1.02156 0.91888 0.93678 1.20469 0.79563 0.87651 0.82625 1.90660 1.39272 1.80500 1.30012 1.46133 1.57773 1.08020 1.25588 1.20130 1.00102 0.78946 0.96159 1.19275 0.94634 0.99296 0.94146 1.20487 0.96128 1.05280 0.99556 1.20749 0.98446 0.97174 0.93047 1.21244 0.95637 1.07592 1.00086 1.19323 0.90255 0.93166 0.87599 1.83980 1.42566 1.58863 1.22570 1.21325 1.01246 1.26177 0.98220 0.89029 1.25297 0.95297 0.97822 0.98041 1.70032 1.08668 1.41867 1.29004 0.85709 0.78487 0.79364 0.79860 1.19848 1.20198 1.19163 1.20084 1.00831 1.05742 0.92467 0.96064 0.91469 0.89173 0.91247 0.91009 0.95553 0.91746 0.87835 0.76331 0.90933 0.90944 0.87473 0.87271 0.85464 0.91933 0.86434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.21 60.06 0.55 0.74 16 2 N -0.53 -5.78 4.76 -252.72 -1.20 -6.98 16 3 C 0.02 0.19 9.57 60.07 0.57 0.77 16 4 C 0.03 0.34 5.45 -4.97 -0.03 0.31 16 5 C 0.51 6.78 7.55 -10.98 -0.08 6.69 16 6 O -0.53 -8.87 14.31 5.56 0.08 -8.80 16 7 N -0.72 -9.14 5.55 -61.47 -0.34 -9.48 16 8 C 0.17 2.45 5.80 -5.19 -0.03 2.42 16 9 C -0.07 -1.21 5.25 -104.65 -0.55 -1.76 16 10 C -0.20 -3.14 9.70 -39.53 -0.38 -3.52 16 11 C -0.08 -1.31 10.04 -39.61 -0.40 -1.70 16 12 C -0.23 -4.67 9.17 -39.40 -0.36 -5.03 16 13 C 0.15 3.47 6.65 -39.11 -0.26 3.21 16 14 O -0.18 -4.88 9.76 0.05 0.00 -4.88 16 15 C -0.39 -10.70 9.49 30.89 0.29 -10.41 16 16 H 0.09 2.29 5.21 -52.49 -0.27 2.02 16 17 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 18 N -0.86 -24.79 13.67 55.48 0.76 -24.03 16 19 Si 0.94 20.04 29.55 -169.99 -5.02 15.01 16 20 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 21 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 22 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 23 C -0.17 -3.42 9.65 -39.39 -0.38 -3.80 16 24 H 0.02 0.21 8.14 -51.93 -0.42 -0.22 16 25 H 0.07 0.64 8.12 -51.93 -0.42 0.22 16 26 H 0.09 1.20 5.88 -51.93 -0.31 0.89 16 27 H 0.07 0.47 8.12 -51.93 -0.42 0.05 16 28 H 0.07 0.51 8.12 -51.93 -0.42 0.09 16 29 H 0.03 0.19 8.14 -51.93 -0.42 -0.24 16 30 H 0.06 0.57 8.12 -51.92 -0.42 0.15 16 31 H 0.10 0.83 8.06 -51.93 -0.42 0.41 16 32 H 0.40 4.43 8.46 -40.82 -0.35 4.08 16 33 H 0.07 1.03 8.09 -51.93 -0.42 0.61 16 34 H 0.07 1.10 8.08 -51.93 -0.42 0.68 16 35 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 36 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 37 H 0.13 2.64 5.64 -52.49 -0.30 2.34 16 38 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 39 H 0.12 2.32 8.06 -52.49 -0.42 1.90 16 LS Contribution 332.60 15.07 5.01 5.01 Total: -1.00 -31.67 332.60 -7.28 -38.95 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -5.41 Total: 6.29 kcal Atomic # 6 Polarization: -9.94 SS G_CDS: -1.15 Total: -11.09 kcal Atomic # 7 Polarization: -39.71 SS G_CDS: -0.78 Total: -40.49 kcal Atomic # 8 Polarization: -13.76 SS G_CDS: 0.08 Total: -13.68 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.01 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.67 -7.28 -38.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113441697.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.990 kcal (2) G-P(sol) polarization free energy of solvation -31.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds