Wall clock time and date at job start Tue Mar 31 2020 01:37:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46901 * 110.99957 * 2 1 4 4 C 1.46903 * 111.00073 * 123.95135 * 2 1 3 5 5 C 1.50700 * 109.46914 * 66.04313 * 4 2 1 6 6 O 1.21274 * 120.00375 * 0.02562 * 5 4 2 7 7 N 1.34783 * 119.99813 * 179.97438 * 5 4 2 8 8 C 1.46500 * 120.00093 * 180.02562 * 7 5 4 9 9 C 1.50699 * 109.47192 * 180.02562 * 8 7 5 10 10 C 1.38328 * 119.96230 * 269.98024 * 9 8 7 11 11 C 1.38281 * 120.13505 * 180.02562 * 10 9 8 12 12 C 1.38120 * 120.06679 * 359.68445 * 11 10 9 13 13 C 1.38852 * 119.93490 * 0.58817 * 12 11 10 14 14 O 1.35752 * 120.07221 * 179.70368 * 13 12 11 15 15 C 1.34829 * 116.99954 * 354.17311 * 14 13 12 16 16 H 1.07998 * 119.99999 * 5.03596 * 15 14 13 17 17 C 1.38656 * 119.99670 * 185.03445 * 15 14 13 18 18 N 1.31550 * 120.00275 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99668 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46814 * 90.00164 * 19 17 15 21 21 H 1.48501 * 109.47378 * 210.00272 * 19 17 15 22 22 H 1.48503 * 109.47143 * 330.00397 * 19 17 15 23 23 C 1.38073 * 119.96534 * 89.99825 * 9 8 7 24 24 H 1.09000 * 109.47501 * 296.04751 * 1 2 3 25 25 H 1.09002 * 109.47263 * 56.05121 * 1 2 3 26 26 H 1.09003 * 109.47350 * 176.05027 * 1 2 3 27 27 H 1.09007 * 109.47073 * 183.95622 * 3 2 1 28 28 H 1.09002 * 109.46699 * 303.94767 * 3 2 1 29 29 H 1.08994 * 109.47540 * 63.95089 * 3 2 1 30 30 H 1.09008 * 109.46658 * 306.04681 * 4 2 1 31 31 H 1.08998 * 109.47555 * 186.04918 * 4 2 1 32 32 H 0.97004 * 119.99718 * 0.02562 * 7 5 4 33 33 H 1.09002 * 109.46490 * 60.00223 * 8 7 5 34 34 H 1.08992 * 109.46880 * 300.00477 * 8 7 5 35 35 H 1.08001 * 119.93314 * 0.02562 * 10 9 8 36 36 H 1.07993 * 119.96315 * 179.97438 * 11 10 9 37 37 H 1.08001 * 120.03256 * 180.31909 * 12 11 10 38 38 H 0.96999 * 119.99936 * 179.97438 * 18 17 15 39 39 H 1.07996 * 120.03547 * 0.02562 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7659 1.1376 5 6 1.6368 -2.2204 0.9730 6 8 1.0054 -2.5832 0.0033 7 7 2.0188 -3.1181 1.9029 8 6 1.6707 -4.5321 1.7426 9 6 2.2107 -5.3178 2.9097 10 6 3.4807 -5.8624 2.8475 11 6 3.9796 -6.5844 3.9161 12 6 3.2130 -6.7584 5.0519 13 6 1.9356 -6.2178 5.1151 14 8 1.1775 -6.3922 6.2277 15 6 1.6739 -7.2001 7.1862 16 1 2.6683 -7.6094 7.0858 17 6 0.9077 -7.5054 8.3008 18 7 -0.3037 -7.0073 8.4228 19 14 1.5952 -8.6253 9.6284 20 1 2.3034 -7.8089 10.6468 21 1 0.4832 -9.3674 10.2749 22 1 2.5457 -9.5900 9.0190 23 6 1.4371 -5.4936 4.0398 24 1 -0.3634 0.4513 0.9233 25 1 -0.3634 0.5739 -0.8525 26 1 -0.3634 -1.0252 -0.0708 27 1 3.0828 1.3432 -0.0709 28 1 1.5898 1.9162 -0.8525 29 1 1.7043 1.8724 0.9232 30 1 1.5610 -0.3871 2.0628 31 1 3.0797 -0.6611 1.1757 32 1 2.5242 -2.8279 2.6784 33 1 2.1051 -4.9104 0.8173 34 1 0.5865 -4.6372 1.7047 35 1 4.0840 -5.7234 1.9625 36 1 4.9713 -7.0087 3.8645 37 1 3.6051 -7.3181 5.8882 38 1 -0.8398 -7.2212 9.2024 39 1 0.4453 -5.0687 4.0874 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113441697.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:44 Heat of formation + Delta-G solvation = -52.203269 kcal Electronic energy + Delta-G solvation = -20616.875273 eV Core-core repulsion = 17331.567317 eV Total energy + Delta-G solvation = -3285.307956 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.09790 -40.59609 -38.56859 -37.57858 -35.69176 -34.29079 -32.40167 -30.85728 -29.60742 -28.42544 -27.49549 -26.54260 -23.44700 -23.21938 -22.37050 -21.38458 -19.62021 -18.90901 -18.05032 -17.18472 -16.92810 -16.71326 -16.37645 -16.10161 -15.85442 -15.63106 -15.46045 -15.35409 -14.93602 -14.34692 -13.98880 -13.89951 -13.76788 -13.44401 -13.22262 -13.02750 -12.82013 -12.67218 -12.55065 -12.42424 -12.36658 -12.27017 -12.11669 -11.21849 -10.90416 -10.79324 -10.09325 -9.75806 -9.31016 -9.03488 -8.47481 -6.16047 0.38379 0.70421 1.35712 1.44433 1.53000 1.65876 2.16377 2.18099 2.83636 3.09136 3.17952 3.40426 3.77627 3.90337 4.09237 4.18491 4.30371 4.34286 4.38483 4.42635 4.49615 4.53094 4.68851 4.70561 4.73021 4.73918 5.01681 5.04449 5.08406 5.11637 5.25610 5.41752 5.62311 5.70496 5.71906 5.88797 6.01304 6.06532 6.16609 6.59248 6.97461 7.27731 7.77689 8.75668 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.028219 B = 0.003049 C = 0.002884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.002751 B = 9182.630328 C = 9704.855898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.552 5.552 3 C 0.025 3.975 4 C 0.038 3.962 5 C 0.510 3.490 6 O -0.567 6.567 7 N -0.716 5.716 8 C 0.176 3.824 9 C -0.058 4.058 10 C -0.168 4.168 11 C -0.069 4.069 12 C -0.235 4.235 13 C 0.113 3.887 14 O -0.233 6.233 15 C -0.413 4.413 16 H 0.104 0.896 17 C -0.023 4.023 18 N -0.921 5.921 19 Si 1.018 2.982 20 H -0.262 1.262 21 H -0.274 1.274 22 H -0.252 1.252 23 C -0.182 4.182 24 H 0.029 0.971 25 H 0.076 0.924 26 H 0.061 0.939 27 H 0.081 0.919 28 H 0.076 0.924 29 H 0.035 0.965 30 H 0.080 0.920 31 H 0.130 0.870 32 H 0.412 0.588 33 H 0.085 0.915 34 H 0.060 0.940 35 H 0.148 0.852 36 H 0.149 0.851 37 H 0.121 0.879 38 H 0.272 0.728 39 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.187 11.463 -11.984 18.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.277 5.277 3 C -0.122 4.122 4 C -0.093 4.093 5 C 0.297 3.703 6 O -0.446 6.446 7 N -0.369 5.369 8 C 0.052 3.948 9 C -0.059 4.059 10 C -0.187 4.187 11 C -0.087 4.087 12 C -0.255 4.255 13 C 0.062 3.938 14 O -0.139 6.139 15 C -0.489 4.489 16 H 0.121 0.879 17 C -0.221 4.221 18 N -0.560 5.560 19 Si 0.837 3.163 20 H -0.187 1.187 21 H -0.198 1.198 22 H -0.176 1.176 23 C -0.202 4.202 24 H 0.047 0.953 25 H 0.095 0.905 26 H 0.079 0.921 27 H 0.100 0.900 28 H 0.095 0.905 29 H 0.054 0.946 30 H 0.097 0.903 31 H 0.148 0.852 32 H 0.248 0.752 33 H 0.103 0.897 34 H 0.078 0.922 35 H 0.166 0.834 36 H 0.167 0.833 37 H 0.138 0.862 38 H 0.081 0.919 39 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 8.496 11.071 -12.924 19.021 hybrid contribution -0.380 -0.155 2.005 2.047 sum 8.116 10.916 -10.919 17.443 Atomic orbital electron populations 1.22488 0.86946 1.02632 1.00714 1.61635 1.08842 1.15065 1.42145 1.22481 1.01490 0.86782 1.01452 1.22066 1.03772 0.89306 0.94115 1.21085 0.78522 0.88921 0.81768 1.90653 1.40950 1.81295 1.31672 1.46023 1.57695 1.07187 1.25988 1.19985 0.99473 0.79919 0.95393 1.19450 0.94560 0.98588 0.93255 1.21001 0.95454 1.02110 1.00143 1.21166 0.99590 0.96348 0.91581 1.21379 0.95106 1.07531 1.01436 1.19853 0.91424 0.94910 0.87579 1.83946 1.44623 1.60982 1.24386 1.21825 1.01929 1.26411 0.98691 0.87894 1.26581 0.95549 0.99441 1.00485 1.70182 1.10682 1.44751 1.30342 0.84594 0.77972 0.77275 0.76440 1.18732 1.19842 1.17570 1.20215 1.01069 1.05799 0.93091 0.95287 0.90524 0.92061 0.89986 0.90488 0.94645 0.90256 0.85190 0.75153 0.89693 0.92187 0.83396 0.83316 0.86164 0.91879 0.87546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.42 9.21 127.69 1.18 1.60 16 2 N -0.55 -10.91 4.76 -953.45 -4.53 -15.44 16 3 C 0.03 0.33 9.57 127.69 1.22 1.55 16 4 C 0.04 0.67 5.45 85.56 0.47 1.14 16 5 C 0.51 12.63 7.55 87.66 0.66 13.29 16 6 O -0.57 -18.65 14.31 -3.01 -0.04 -18.69 16 7 N -0.72 -16.54 5.55 -466.79 -2.59 -19.13 16 8 C 0.18 4.74 5.80 85.63 0.50 5.24 16 9 C -0.06 -1.80 5.25 -19.88 -0.10 -1.91 16 10 C -0.17 -4.68 9.70 22.30 0.22 -4.46 16 11 C -0.07 -2.12 10.04 22.25 0.22 -1.90 16 12 C -0.24 -9.56 9.17 22.39 0.21 -9.36 16 13 C 0.11 5.35 6.65 22.58 0.15 5.50 16 14 O -0.23 -13.66 9.76 -22.74 -0.22 -13.88 16 15 C -0.41 -23.44 9.49 67.92 0.64 -22.79 16 16 H 0.10 5.31 5.21 -2.91 -0.02 5.30 16 17 C -0.02 -1.29 5.49 84.83 0.47 -0.83 16 18 N -0.92 -55.99 13.67 21.61 0.30 -55.69 16 19 Si 1.02 41.97 29.55 68.60 2.03 44.00 16 20 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 21 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 22 H -0.25 -9.61 7.11 99.48 0.71 -8.90 16 23 C -0.18 -7.37 9.65 22.39 0.22 -7.15 16 24 H 0.03 0.53 8.14 -2.39 -0.02 0.51 16 25 H 0.08 1.38 8.12 -2.39 -0.02 1.36 16 26 H 0.06 1.64 5.88 -2.39 -0.01 1.62 16 27 H 0.08 0.85 8.12 -2.38 -0.02 0.83 16 28 H 0.08 0.91 8.12 -2.39 -0.02 0.89 16 29 H 0.03 0.40 8.14 -2.39 -0.02 0.38 16 30 H 0.08 1.18 8.12 -2.38 -0.02 1.16 16 31 H 0.13 1.59 8.06 -2.39 -0.02 1.57 16 32 H 0.41 7.97 8.46 -92.71 -0.78 7.19 16 33 H 0.08 2.15 8.09 -2.39 -0.02 2.13 16 34 H 0.06 1.80 8.08 -2.39 -0.02 1.78 16 35 H 0.15 3.09 8.06 -2.91 -0.02 3.07 16 36 H 0.15 3.47 8.06 -2.91 -0.02 3.45 16 37 H 0.12 4.99 5.64 -2.91 -0.02 4.97 16 38 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 39 H 0.11 4.45 8.06 -2.91 -0.02 4.42 16 Total: -1.00 -73.81 332.60 1.25 -72.56 By element: Atomic # 1 Polarization: 26.07 SS G_CDS: 0.28 Total: 26.35 kcal Atomic # 6 Polarization: -26.12 SS G_CDS: 6.04 Total: -20.08 kcal Atomic # 7 Polarization: -83.44 SS G_CDS: -6.83 Total: -90.27 kcal Atomic # 8 Polarization: -32.30 SS G_CDS: -0.26 Total: -32.57 kcal Atomic # 14 Polarization: 41.97 SS G_CDS: 2.03 Total: 44.00 kcal Total: -73.81 1.25 -72.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113441697.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.360 kcal (2) G-P(sol) polarization free energy of solvation -73.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds