Wall clock time and date at job start Tue Mar 31 2020 00:36:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46504 * 109.46563 * 2 1 4 4 C 1.46497 * 119.99931 * 269.99851 * 3 2 1 5 5 C 1.34776 * 119.99835 * 90.00637 * 3 2 1 6 6 O 1.21586 * 120.00194 * 359.97438 * 5 3 2 7 7 N 1.34783 * 119.99844 * 179.97438 * 5 3 2 8 8 C 1.46500 * 120.00093 * 179.97438 * 7 5 3 9 9 C 1.50699 * 109.47192 * 180.02562 * 8 7 5 10 10 C 1.38328 * 119.96230 * 269.98024 * 9 8 7 11 11 C 1.38281 * 120.13505 * 180.02562 * 10 9 8 12 12 C 1.38120 * 120.06679 * 359.68445 * 11 10 9 13 13 C 1.38852 * 119.93490 * 0.58817 * 12 11 10 14 14 O 1.35752 * 120.07221 * 179.70368 * 13 12 11 15 15 C 1.34829 * 116.99954 * 354.17311 * 14 13 12 16 16 H 1.07998 * 119.99999 * 5.03596 * 15 14 13 17 17 C 1.38656 * 119.99670 * 185.03445 * 15 14 13 18 18 N 1.31550 * 120.00275 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99668 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47063 * 60.00398 * 19 17 15 21 21 H 1.48498 * 109.47240 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47319 * 300.00306 * 19 17 15 23 23 C 1.38073 * 119.96534 * 89.99825 * 9 8 7 24 24 H 1.09000 * 109.47070 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47434 * 299.99724 * 1 2 3 26 26 H 1.08995 * 109.47529 * 59.99870 * 1 2 3 27 27 H 1.08996 * 109.47164 * 240.00667 * 2 1 3 28 28 H 1.08995 * 109.47529 * 120.00130 * 2 1 3 29 29 H 1.09008 * 109.47437 * 270.00326 * 4 3 2 30 30 H 1.09004 * 109.47313 * 30.00339 * 4 3 2 31 31 H 1.09007 * 109.47099 * 150.00545 * 4 3 2 32 32 H 0.97004 * 119.99718 * 0.02562 * 7 5 3 33 33 H 1.09002 * 109.46490 * 60.00223 * 8 7 5 34 34 H 1.08992 * 109.46880 * 300.00477 * 8 7 5 35 35 H 1.08001 * 119.93314 * 0.02562 * 10 9 8 36 36 H 1.07993 * 119.96315 * 179.97438 * 11 10 9 37 37 H 1.08001 * 120.03256 * 180.31909 * 12 11 10 38 38 H 0.96999 * 119.99936 * 179.97438 * 18 17 15 39 39 H 1.07996 * 120.03547 * 0.02562 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2623 2.0719 -1.2687 5 6 2.2429 2.0166 1.1672 6 8 2.0399 1.4435 2.2202 7 7 2.6925 3.2872 1.1672 8 6 2.9362 3.9780 2.4359 9 6 3.4300 5.3749 2.1606 10 6 4.7864 5.6160 2.0351 11 6 5.2434 6.8965 1.7830 12 6 4.3460 7.9378 1.6491 13 6 2.9842 7.7000 1.7801 14 8 2.1001 8.7225 1.6551 15 6 2.6128 9.9626 1.5244 16 1 3.6809 10.0993 1.4409 17 6 1.7689 11.0624 1.4974 18 7 0.4680 10.8959 1.5996 19 14 2.4794 12.7806 1.3171 20 1 3.2312 12.8739 0.0400 21 1 1.3763 13.7748 1.3164 22 1 3.3954 13.0591 2.4523 23 6 2.5282 6.4128 2.0341 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.8933 -0.5137 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 3.2918 1.9007 -1.5834 30 1 1.5815 1.6877 -2.0284 31 1 2.0953 3.1412 -1.1384 32 1 2.8540 3.7445 0.3271 33 1 3.6871 3.4329 3.0079 34 1 2.0091 4.0267 3.0070 35 1 5.4898 4.8025 2.1343 36 1 6.3030 7.0816 1.6860 37 1 4.7033 8.9367 1.4471 38 1 -0.1224 11.6654 1.5811 39 1 1.4695 6.2240 2.1328 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113630433.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:36:15 Heat of formation + Delta-G solvation = -28.269710 kcal Electronic energy + Delta-G solvation = -20892.523012 eV Core-core repulsion = 17608.252893 eV Total energy + Delta-G solvation = -3284.270119 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.18739 -39.09667 -36.93310 -35.85500 -34.54780 -32.35357 -31.58749 -30.22713 -29.08582 -26.89013 -25.89796 -25.10440 -23.09062 -21.71027 -20.82533 -19.89213 -18.37977 -17.55187 -16.97645 -16.46798 -15.80576 -15.18790 -14.73331 -14.59794 -14.51017 -14.31923 -13.73442 -13.63518 -13.50025 -13.29670 -12.83227 -12.64800 -12.54310 -12.30778 -12.09170 -12.02100 -11.67569 -11.37597 -11.15214 -10.92534 -10.82298 -10.70856 -10.50019 -10.09321 -9.42171 -9.06609 -8.89654 -8.59849 -8.25606 -7.33608 -6.49749 -4.09473 1.87019 2.26186 2.77082 3.09712 3.11223 3.13948 3.25522 3.91943 4.00416 4.52795 4.84670 4.89725 4.94756 5.03410 5.06863 5.26331 5.28685 5.32204 5.47487 5.53593 5.55374 5.74817 5.78057 5.85411 5.94848 6.06246 6.07316 6.24798 6.40531 6.55544 6.59430 6.81539 6.88948 6.99508 7.19332 7.26882 7.34996 7.70362 7.94130 7.97794 8.63716 8.95437 9.64124 10.67938 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.026535 B = 0.003334 C = 0.003144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.959208 B = 8397.483598 C = 8904.077688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.130 3.870 3 N -0.637 5.637 4 C 0.078 3.922 5 C 0.704 3.296 6 O -0.594 6.594 7 N -0.736 5.736 8 C 0.185 3.815 9 C -0.072 4.072 10 C -0.194 4.194 11 C -0.076 4.076 12 C -0.226 4.226 13 C 0.150 3.850 14 O -0.176 6.176 15 C -0.394 4.394 16 H 0.092 0.908 17 C 0.040 3.960 18 N -0.861 5.861 19 Si 0.941 3.059 20 H -0.270 1.270 21 H -0.278 1.278 22 H -0.270 1.270 23 C -0.170 4.170 24 H 0.063 0.937 25 H 0.060 0.940 26 H 0.053 0.947 27 H 0.073 0.927 28 H 0.083 0.917 29 H 0.055 0.945 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.399 0.601 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.107 0.893 36 H 0.109 0.891 37 H 0.128 0.872 38 H 0.271 0.729 39 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.698 -14.990 -5.796 16.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.007 3.993 3 N -0.375 5.375 4 C -0.065 4.065 5 C 0.405 3.595 6 O -0.472 6.472 7 N -0.393 5.393 8 C 0.062 3.938 9 C -0.073 4.073 10 C -0.214 4.214 11 C -0.095 4.095 12 C -0.245 4.245 13 C 0.096 3.904 14 O -0.080 6.080 15 C -0.470 4.470 16 H 0.109 0.891 17 C -0.164 4.164 18 N -0.496 5.496 19 Si 0.766 3.234 20 H -0.195 1.195 21 H -0.202 1.202 22 H -0.195 1.195 23 C -0.190 4.190 24 H 0.082 0.918 25 H 0.080 0.920 26 H 0.072 0.928 27 H 0.091 0.909 28 H 0.101 0.899 29 H 0.074 0.926 30 H 0.091 0.909 31 H 0.088 0.912 32 H 0.234 0.766 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.125 0.875 36 H 0.127 0.873 37 H 0.145 0.855 38 H 0.081 0.919 39 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 4.075 -15.240 -5.011 16.552 hybrid contribution 0.484 1.268 -0.624 1.494 sum 4.559 -13.972 -5.635 15.740 Atomic orbital electron populations 1.22162 0.96198 1.01945 1.02464 1.21253 0.94112 0.81154 1.02810 1.47068 1.70785 1.14825 1.04865 1.21729 1.01280 0.97673 0.85835 1.15903 0.78285 0.81493 0.83777 1.90897 1.59567 1.66769 1.29991 1.45419 1.71065 1.12546 1.10228 1.20002 1.00785 0.88533 0.84483 1.19289 0.93416 0.93139 1.01476 1.20489 0.94243 0.96647 1.10003 1.20745 0.98318 0.92574 0.97823 1.21237 0.93078 1.00136 1.10096 1.19322 0.89153 0.89223 0.92656 1.83982 1.31948 1.13979 1.78057 1.21277 0.93558 0.79837 1.52361 0.89090 1.25291 0.95172 0.99464 0.96497 1.70023 1.02335 1.31673 1.45541 0.85782 0.78430 0.80027 0.79205 1.19485 1.20241 1.19464 1.20097 0.99349 0.90456 1.09136 0.91770 0.92042 0.92751 0.90855 0.89864 0.92637 0.90874 0.91210 0.76554 0.91123 0.91060 0.87493 0.87287 0.85478 0.91890 0.86397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.55 10.24 37.16 0.38 -1.17 16 2 C 0.13 1.25 6.13 -4.04 -0.02 1.23 16 3 N -0.64 -7.26 2.87 -187.35 -0.54 -7.80 16 4 C 0.08 0.64 10.20 59.85 0.61 1.25 16 5 C 0.70 10.50 8.28 -86.91 -0.72 9.79 16 6 O -0.59 -10.93 15.92 5.29 0.08 -10.85 16 7 N -0.74 -10.34 5.41 -66.42 -0.36 -10.70 16 8 C 0.19 2.84 5.80 -5.19 -0.03 2.81 16 9 C -0.07 -1.24 5.25 -104.65 -0.55 -1.79 16 10 C -0.19 -3.19 9.70 -39.53 -0.38 -3.57 16 11 C -0.08 -1.33 10.04 -39.61 -0.40 -1.73 16 12 C -0.23 -4.70 9.17 -39.40 -0.36 -5.06 16 13 C 0.15 3.50 6.65 -39.11 -0.26 3.24 16 14 O -0.18 -4.91 9.76 0.05 0.00 -4.91 16 15 C -0.39 -10.77 9.49 30.89 0.29 -10.48 16 16 H 0.09 2.28 5.21 -52.49 -0.27 2.01 16 17 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 18 N -0.86 -24.89 13.67 55.48 0.76 -24.13 16 19 Si 0.94 20.10 29.55 -169.99 -5.02 15.08 16 20 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 21 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 22 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 23 C -0.17 -3.46 9.65 -39.39 -0.38 -3.84 16 24 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 26 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.07 0.51 8.07 -51.93 -0.42 0.09 16 28 H 0.08 0.92 7.42 -51.93 -0.39 0.54 16 29 H 0.06 0.39 8.14 -51.92 -0.42 -0.03 16 30 H 0.07 0.47 8.07 -51.93 -0.42 0.05 16 31 H 0.07 0.59 6.36 -51.93 -0.33 0.26 16 32 H 0.40 5.00 6.19 -40.82 -0.25 4.75 16 33 H 0.07 1.06 8.09 -51.93 -0.42 0.64 16 34 H 0.07 1.15 8.08 -51.93 -0.42 0.73 16 35 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 36 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 37 H 0.13 2.64 5.64 -52.49 -0.30 2.35 16 38 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 39 H 0.12 2.38 8.06 -52.49 -0.42 1.96 16 LS Contribution 332.77 15.07 5.01 5.01 Total: -1.00 -32.24 332.77 -7.29 -39.53 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -5.31 Total: 7.08 kcal Atomic # 6 Polarization: -6.39 SS G_CDS: -1.92 Total: -8.31 kcal Atomic # 7 Polarization: -42.49 SS G_CDS: -0.14 Total: -42.63 kcal Atomic # 8 Polarization: -15.84 SS G_CDS: 0.08 Total: -15.76 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.08 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -32.24 -7.29 -39.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113630433.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.257 kcal (2) G-P(sol) polarization free energy of solvation -32.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds