Wall clock time and date at job start Tue Mar 31 2020 00:36:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46504 * 109.46563 * 2 1 4 4 C 1.46497 * 119.99931 * 269.99851 * 3 2 1 5 5 C 1.34776 * 119.99835 * 90.00637 * 3 2 1 6 6 O 1.21586 * 120.00194 * 359.97438 * 5 3 2 7 7 N 1.34783 * 119.99844 * 179.97438 * 5 3 2 8 8 C 1.46500 * 120.00093 * 179.97438 * 7 5 3 9 9 C 1.50699 * 109.47192 * 180.02562 * 8 7 5 10 10 C 1.38328 * 119.96230 * 269.98024 * 9 8 7 11 11 C 1.38281 * 120.13505 * 180.02562 * 10 9 8 12 12 C 1.38120 * 120.06679 * 359.68445 * 11 10 9 13 13 C 1.38852 * 119.93490 * 0.58817 * 12 11 10 14 14 O 1.35752 * 120.07221 * 179.70368 * 13 12 11 15 15 C 1.34829 * 116.99954 * 354.17311 * 14 13 12 16 16 H 1.07998 * 119.99999 * 5.03596 * 15 14 13 17 17 C 1.38656 * 119.99670 * 185.03445 * 15 14 13 18 18 N 1.31550 * 120.00275 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99668 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47063 * 60.00398 * 19 17 15 21 21 H 1.48498 * 109.47240 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47319 * 300.00306 * 19 17 15 23 23 C 1.38073 * 119.96534 * 89.99825 * 9 8 7 24 24 H 1.09000 * 109.47070 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47434 * 299.99724 * 1 2 3 26 26 H 1.08995 * 109.47529 * 59.99870 * 1 2 3 27 27 H 1.08996 * 109.47164 * 240.00667 * 2 1 3 28 28 H 1.08995 * 109.47529 * 120.00130 * 2 1 3 29 29 H 1.09008 * 109.47437 * 270.00326 * 4 3 2 30 30 H 1.09004 * 109.47313 * 30.00339 * 4 3 2 31 31 H 1.09007 * 109.47099 * 150.00545 * 4 3 2 32 32 H 0.97004 * 119.99718 * 0.02562 * 7 5 3 33 33 H 1.09002 * 109.46490 * 60.00223 * 8 7 5 34 34 H 1.08992 * 109.46880 * 300.00477 * 8 7 5 35 35 H 1.08001 * 119.93314 * 0.02562 * 10 9 8 36 36 H 1.07993 * 119.96315 * 179.97438 * 11 10 9 37 37 H 1.08001 * 120.03256 * 180.31909 * 12 11 10 38 38 H 0.96999 * 119.99936 * 179.97438 * 18 17 15 39 39 H 1.07996 * 120.03547 * 0.02562 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2623 2.0719 -1.2687 5 6 2.2429 2.0166 1.1672 6 8 2.0399 1.4435 2.2202 7 7 2.6925 3.2872 1.1672 8 6 2.9362 3.9780 2.4359 9 6 3.4300 5.3749 2.1606 10 6 4.7864 5.6160 2.0351 11 6 5.2434 6.8965 1.7830 12 6 4.3460 7.9378 1.6491 13 6 2.9842 7.7000 1.7801 14 8 2.1001 8.7225 1.6551 15 6 2.6128 9.9626 1.5244 16 1 3.6809 10.0993 1.4409 17 6 1.7689 11.0624 1.4974 18 7 0.4680 10.8959 1.5996 19 14 2.4794 12.7806 1.3171 20 1 3.2312 12.8739 0.0400 21 1 1.3763 13.7748 1.3164 22 1 3.3954 13.0591 2.4523 23 6 2.5282 6.4128 2.0341 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.8933 -0.5137 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 3.2918 1.9007 -1.5834 30 1 1.5815 1.6877 -2.0284 31 1 2.0953 3.1412 -1.1384 32 1 2.8540 3.7445 0.3271 33 1 3.6871 3.4329 3.0079 34 1 2.0091 4.0267 3.0070 35 1 5.4898 4.8025 2.1343 36 1 6.3030 7.0816 1.6860 37 1 4.7033 8.9367 1.4471 38 1 -0.1224 11.6654 1.5811 39 1 1.4695 6.2240 2.1328 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113630433.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:36:14 Heat of formation + Delta-G solvation = -49.413956 kcal Electronic energy + Delta-G solvation = -20893.439895 eV Core-core repulsion = 17608.252893 eV Total energy + Delta-G solvation = -3285.187003 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.72 seconds Orbital eigenvalues (eV) -41.34189 -40.72162 -38.55180 -36.89060 -35.85063 -34.29044 -32.70561 -31.42597 -30.65920 -27.82626 -27.43353 -26.68450 -24.04025 -23.25470 -22.41279 -20.99843 -19.73139 -19.13130 -18.56763 -17.55163 -16.95327 -16.73498 -16.31896 -16.12215 -15.72821 -15.47403 -15.38451 -15.02493 -14.58402 -14.33704 -14.24235 -13.93913 -13.64507 -13.46519 -13.32461 -13.11670 -12.98779 -12.81389 -12.51907 -12.36967 -12.27588 -12.14140 -11.91095 -11.33270 -11.20481 -10.80061 -10.25673 -9.77903 -9.52887 -9.03892 -8.46695 -6.15534 0.36385 0.70257 1.36049 1.46199 1.52182 1.74897 2.10873 2.17934 2.77659 3.03607 3.20451 3.40395 3.82070 4.08930 4.11932 4.24355 4.30561 4.32431 4.41756 4.52750 4.55801 4.63526 4.68281 4.72568 4.83109 4.88412 5.00136 5.01719 5.11612 5.25268 5.30206 5.41167 5.57504 5.62539 5.70405 5.71881 5.91236 6.01672 6.16407 6.91704 6.97908 7.51334 7.78102 8.76211 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.026535 B = 0.003334 C = 0.003144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.959208 B = 8397.483598 C = 8904.077688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.125 3.875 3 N -0.633 5.633 4 C 0.073 3.927 5 C 0.697 3.303 6 O -0.635 6.635 7 N -0.731 5.731 8 C 0.192 3.808 9 C -0.058 4.058 10 C -0.167 4.167 11 C -0.068 4.068 12 C -0.233 4.233 13 C 0.113 3.887 14 O -0.232 6.232 15 C -0.414 4.414 16 H 0.104 0.896 17 C -0.023 4.023 18 N -0.921 5.921 19 Si 1.018 2.982 20 H -0.255 1.255 21 H -0.274 1.274 22 H -0.258 1.258 23 C -0.181 4.181 24 H 0.084 0.916 25 H 0.027 0.973 26 H 0.063 0.937 27 H 0.110 0.890 28 H 0.064 0.936 29 H 0.073 0.927 30 H 0.096 0.904 31 H 0.064 0.936 32 H 0.407 0.593 33 H 0.084 0.916 34 H 0.057 0.943 35 H 0.148 0.852 36 H 0.150 0.850 37 H 0.122 0.878 38 H 0.272 0.728 39 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.557 -16.429 -7.061 19.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.003 3.997 3 N -0.370 5.370 4 C -0.069 4.069 5 C 0.398 3.602 6 O -0.517 6.517 7 N -0.388 5.388 8 C 0.068 3.932 9 C -0.059 4.059 10 C -0.186 4.186 11 C -0.086 4.086 12 C -0.253 4.253 13 C 0.063 3.937 14 O -0.139 6.139 15 C -0.490 4.490 16 H 0.122 0.878 17 C -0.220 4.220 18 N -0.559 5.559 19 Si 0.837 3.163 20 H -0.179 1.179 21 H -0.199 1.199 22 H -0.182 1.182 23 C -0.201 4.201 24 H 0.102 0.898 25 H 0.047 0.953 26 H 0.082 0.918 27 H 0.128 0.872 28 H 0.083 0.917 29 H 0.091 0.909 30 H 0.115 0.885 31 H 0.082 0.918 32 H 0.244 0.756 33 H 0.102 0.898 34 H 0.076 0.924 35 H 0.165 0.835 36 H 0.168 0.832 37 H 0.140 0.860 38 H 0.081 0.919 39 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 6.977 -16.732 -6.323 19.199 hybrid contribution -0.267 1.351 -0.232 1.397 sum 6.710 -15.381 -6.555 18.015 Atomic orbital electron populations 1.22117 0.95943 1.02940 1.01232 1.21449 0.94310 0.80311 1.03662 1.47214 1.69614 1.15395 1.04824 1.21961 1.03057 0.97210 0.84721 1.16113 0.78221 0.81501 0.84318 1.90866 1.61311 1.67670 1.31834 1.45245 1.71085 1.12433 1.10047 1.19860 1.00536 0.87589 0.85182 1.19430 0.93555 0.93017 0.99901 1.20992 0.94201 0.97412 1.06014 1.21166 0.99785 0.91716 0.95933 1.21382 0.92508 1.01188 1.10194 1.19833 0.90219 0.89269 0.94376 1.83949 1.33935 1.14914 1.81122 1.21802 0.94408 0.80361 1.52439 0.87835 1.26588 0.95449 1.04013 0.95967 1.70180 1.04121 1.32972 1.48665 0.84657 0.77817 0.73885 0.79938 1.17928 1.19869 1.18216 1.20207 0.99596 0.90530 1.09805 0.89751 0.95340 0.91763 0.87218 0.91717 0.90850 0.88545 0.91757 0.75565 0.89799 0.92445 0.83464 0.83191 0.86019 0.91875 0.87669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.77 10.24 71.98 0.74 -2.03 16 2 C 0.13 2.16 6.13 86.38 0.53 2.69 16 3 N -0.63 -13.22 2.87 -864.90 -2.48 -15.70 16 4 C 0.07 0.98 10.20 127.77 1.30 2.28 16 5 C 0.70 20.09 8.28 179.05 1.48 21.57 16 6 O -0.63 -23.33 15.92 -3.99 -0.06 -23.40 16 7 N -0.73 -19.43 5.41 -482.30 -2.61 -22.04 16 8 C 0.19 5.62 5.80 85.63 0.50 6.12 16 9 C -0.06 -1.89 5.25 -19.88 -0.10 -1.99 16 10 C -0.17 -4.78 9.70 22.30 0.22 -4.57 16 11 C -0.07 -2.12 10.04 22.25 0.22 -1.89 16 12 C -0.23 -9.53 9.17 22.39 0.21 -9.33 16 13 C 0.11 5.44 6.65 22.58 0.15 5.59 16 14 O -0.23 -13.74 9.76 -22.74 -0.22 -13.96 16 15 C -0.41 -23.60 9.49 67.92 0.64 -22.96 16 16 H 0.10 5.34 5.21 -2.91 -0.02 5.32 16 17 C -0.02 -1.27 5.49 84.83 0.47 -0.80 16 18 N -0.92 -56.19 13.67 21.61 0.30 -55.89 16 19 Si 1.02 42.02 29.55 68.60 2.03 44.05 16 20 H -0.26 -9.78 7.11 99.48 0.71 -9.08 16 21 H -0.27 -10.97 7.11 99.48 0.71 -10.27 16 22 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 23 C -0.18 -7.53 9.65 22.39 0.22 -7.31 16 24 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 25 H 0.03 0.66 8.14 -2.39 -0.02 0.64 16 26 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.11 1.12 8.07 -2.39 -0.02 1.10 16 28 H 0.06 1.38 7.42 -2.39 -0.02 1.36 16 29 H 0.07 0.77 8.14 -2.38 -0.02 0.75 16 30 H 0.10 0.88 8.07 -2.39 -0.02 0.86 16 31 H 0.06 0.95 6.36 -2.38 -0.02 0.94 16 32 H 0.41 9.41 6.19 -92.71 -0.57 8.83 16 33 H 0.08 2.28 8.09 -2.39 -0.02 2.26 16 34 H 0.06 1.86 8.08 -2.39 -0.02 1.84 16 35 H 0.15 3.21 8.06 -2.91 -0.02 3.18 16 36 H 0.15 3.51 8.06 -2.91 -0.02 3.49 16 37 H 0.12 5.04 5.64 -2.91 -0.02 5.03 16 38 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 39 H 0.11 4.53 8.06 -2.91 -0.02 4.51 16 Total: -1.00 -75.62 332.77 3.99 -71.63 By element: Atomic # 1 Polarization: 27.46 SS G_CDS: 0.49 Total: 27.95 kcal Atomic # 6 Polarization: -19.21 SS G_CDS: 6.57 Total: -12.64 kcal Atomic # 7 Polarization: -88.83 SS G_CDS: -4.80 Total: -93.63 kcal Atomic # 8 Polarization: -37.07 SS G_CDS: -0.29 Total: -37.35 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.05 kcal Total: -75.62 3.99 -71.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113630433.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.213 kcal (2) G-P(sol) polarization free energy of solvation -75.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.72 seconds