Wall clock time and date at job start Tue Mar 31 2020 00:33:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46498 * 109.46935 * 2 1 4 4 C 1.46505 * 120.00261 * 272.47007 * 3 2 1 5 5 C 1.50699 * 109.46820 * 270.00112 * 4 3 2 6 6 H 1.08000 * 120.00219 * 0.02562 * 5 4 3 7 7 C 1.37880 * 119.99989 * 179.97438 * 5 4 3 8 8 N 1.31513 * 120.00022 * 180.02562 * 7 5 4 9 9 Si 1.86799 * 119.99893 * 0.02562 * 7 5 4 10 10 H 1.48494 * 109.47411 * 89.99629 * 9 7 5 11 11 H 1.48504 * 109.46874 * 210.00007 * 9 7 5 12 12 H 1.48506 * 109.46828 * 329.99395 * 9 7 5 13 13 C 1.34779 * 120.00121 * 92.47106 * 3 2 1 14 14 O 1.21285 * 120.00027 * 185.29931 * 13 3 2 15 15 C 1.50699 * 119.99913 * 5.29686 * 13 3 2 16 16 H 1.09004 * 109.47169 * 314.73318 * 15 13 3 17 17 C 1.52993 * 109.47265 * 74.73428 * 15 13 3 18 18 O 1.42904 * 109.47062 * 194.74117 * 15 13 3 19 19 C 1.35911 * 117.00057 * 156.25796 * 18 15 13 20 20 C 1.39142 * 120.47577 * 357.37016 * 19 18 15 21 21 C 1.38535 * 118.37506 * 180.02562 * 20 19 18 22 22 C 1.38246 * 119.22201 * 359.97438 * 21 20 19 23 23 N 1.31851 * 120.88766 * 359.97438 * 22 21 20 24 24 C 1.31849 * 121.77925 * 359.70779 * 23 22 21 25 25 H 1.09006 * 109.47145 * 59.99724 * 1 2 3 26 26 H 1.08998 * 109.47457 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47014 * 299.99854 * 1 2 3 28 28 H 1.08994 * 109.47084 * 240.00146 * 2 1 3 29 29 H 1.08997 * 109.47033 * 120.00089 * 2 1 3 30 30 H 1.09000 * 109.46733 * 29.99558 * 4 3 2 31 31 H 1.08996 * 109.47250 * 150.00153 * 4 3 2 32 32 H 0.96999 * 119.99542 * 180.02562 * 8 7 5 33 33 H 1.09004 * 109.46782 * 55.21723 * 17 15 13 34 34 H 1.08996 * 109.47403 * 295.21699 * 17 15 13 35 35 H 1.09000 * 109.46893 * 175.21202 * 17 15 13 36 36 H 1.08000 * 120.81177 * 359.97438 * 20 19 18 37 37 H 1.08002 * 120.38524 * 180.02562 * 21 20 19 38 38 H 1.07999 * 119.55698 * 179.97438 * 22 21 20 39 39 H 1.07995 * 119.65824 * 180.28885 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2109 2.0901 -1.2676 5 6 3.6153 1.8600 -1.7634 6 1 4.2961 1.2467 -1.1917 7 6 4.0307 2.4316 -2.9473 8 7 5.2561 2.2304 -3.3803 9 14 2.8530 3.4918 -3.9364 10 1 2.9738 4.9059 -3.4995 11 1 3.1876 3.3892 -5.3796 12 1 1.4611 3.0229 -3.7165 13 6 2.2903 1.9998 1.1661 14 8 2.6020 3.1719 1.1725 15 6 2.2072 1.2351 2.4620 16 1 1.2928 0.6421 2.4760 17 6 3.4181 0.3082 2.5858 18 8 2.1961 2.1533 3.5570 19 6 1.6428 1.7198 4.7202 20 6 1.0683 0.4550 4.8001 21 6 0.5163 0.0576 6.0069 22 6 0.5543 0.9233 7.0841 23 7 1.1074 2.1153 6.9753 24 6 1.6490 2.5290 5.8466 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.4997 1.7167 -2.0043 31 1 2.0497 3.1573 -1.1152 32 1 5.5484 2.6328 -4.2130 33 1 4.3337 0.8914 2.4867 34 1 3.3806 -0.4456 1.7995 35 1 3.4028 -0.1813 3.5596 36 1 1.0524 -0.2006 3.9419 37 1 0.0623 -0.9174 6.1053 38 1 0.1252 0.6192 8.0274 39 1 2.0969 3.5105 5.7971 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000117990621.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:33:22 Heat of formation + Delta-G solvation = -27.270255 kcal Electronic energy + Delta-G solvation = -21829.561324 eV Core-core repulsion = 18545.334544 eV Total energy + Delta-G solvation = -3284.226780 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -40.93319 -39.55614 -37.90995 -35.55896 -32.98247 -32.40143 -31.98107 -30.46654 -30.13044 -27.81246 -24.98923 -23.89189 -23.22142 -23.07539 -21.65065 -18.80757 -18.60181 -17.03280 -16.94340 -16.86111 -16.13398 -15.78115 -15.39611 -14.74674 -14.51895 -14.23080 -13.94878 -13.65340 -13.61874 -13.15491 -12.96540 -12.69667 -12.46365 -12.34790 -12.13646 -11.92645 -11.68375 -11.57595 -11.11517 -11.04112 -10.79416 -10.55938 -10.22006 -9.98250 -9.75656 -9.61005 -9.13299 -8.64496 -8.52609 -7.87516 -6.14616 -4.14340 0.95701 1.07924 2.69982 3.07818 3.25727 3.31575 3.34188 3.62754 3.82160 4.33901 4.34684 4.44210 4.54361 4.63077 4.77098 4.89477 4.94982 5.04774 5.08107 5.18835 5.38583 5.43090 5.52756 5.54539 5.63151 5.79761 5.84355 5.89805 6.02084 6.11589 6.23664 6.27488 6.59345 6.86049 7.08317 7.22852 7.53272 7.79686 8.05251 8.38867 8.75786 8.88083 9.45086 10.98497 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.030659 B = 0.004163 C = 0.004002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.066414 B = 6723.577644 C = 6995.230065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.096 3.904 3 N -0.587 5.587 4 C 0.217 3.783 5 C -0.533 4.533 6 H 0.075 0.925 7 C 0.074 3.926 8 N -0.895 5.895 9 Si 0.876 3.124 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.266 1.266 13 C 0.516 3.484 14 O -0.516 6.516 15 C 0.064 3.936 16 H 0.091 0.909 17 C -0.175 4.175 18 O -0.275 6.275 19 C 0.090 3.910 20 C -0.173 4.173 21 C -0.130 4.130 22 C 0.048 3.952 23 N -0.447 5.447 24 C 0.073 3.927 25 H 0.063 0.937 26 H 0.064 0.936 27 H 0.049 0.951 28 H 0.090 0.910 29 H 0.070 0.930 30 H 0.033 0.967 31 H 0.039 0.961 32 H 0.265 0.735 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.068 0.932 36 H 0.141 0.859 37 H 0.137 0.863 38 H 0.156 0.844 39 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.085 -8.871 14.889 20.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.027 4.027 3 N -0.320 5.320 4 C 0.097 3.903 5 C -0.572 4.572 6 H 0.093 0.907 7 C -0.129 4.129 8 N -0.533 5.533 9 Si 0.702 3.298 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.191 1.191 13 C 0.300 3.700 14 O -0.391 6.391 15 C 0.004 3.996 16 H 0.108 0.892 17 C -0.232 4.232 18 O -0.186 6.186 19 C 0.041 3.959 20 C -0.199 4.199 21 C -0.149 4.149 22 C -0.108 4.108 23 N -0.156 5.156 24 C -0.086 4.086 25 H 0.082 0.918 26 H 0.083 0.917 27 H 0.068 0.932 28 H 0.108 0.892 29 H 0.088 0.912 30 H 0.051 0.949 31 H 0.057 0.943 32 H 0.075 0.925 33 H 0.099 0.901 34 H 0.104 0.896 35 H 0.087 0.913 36 H 0.159 0.841 37 H 0.154 0.846 38 H 0.173 0.827 39 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -10.681 -7.443 15.372 20.144 hybrid contribution -0.553 -0.416 -1.492 1.644 sum -11.234 -7.859 13.880 19.509 Atomic orbital electron populations 1.22251 0.96511 1.01798 1.02457 1.21651 0.93701 0.83887 1.03510 1.47832 1.64001 1.13563 1.06562 1.19707 0.97738 0.93293 0.79539 1.21307 0.96201 1.32630 1.07028 0.90651 1.24843 0.95085 0.95767 0.97177 1.69889 1.16802 1.44512 1.22133 0.86861 0.81648 0.81765 0.79495 1.19805 1.20999 1.19053 1.19673 0.78781 0.87438 0.84084 1.90712 1.46196 1.15800 1.86388 1.22432 1.00645 0.90822 0.85693 0.89184 1.22329 0.98285 0.99494 1.03107 1.86291 1.74400 1.40444 1.17472 1.20332 0.93727 0.93799 0.88025 1.21785 1.01872 0.96418 0.99871 1.21976 0.98952 1.01048 0.92953 1.22635 0.99182 0.89951 0.99064 1.67737 1.07288 1.16074 1.24521 1.22264 0.99914 1.00500 0.85914 0.91829 0.91686 0.93155 0.89202 0.91173 0.94904 0.94327 0.92464 0.90148 0.89592 0.91289 0.84128 0.84558 0.82666 0.81753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.00 10.19 37.16 0.38 -1.62 16 2 C 0.10 1.36 5.68 -4.04 -0.02 1.34 16 3 N -0.59 -11.49 2.46 -175.06 -0.43 -11.92 16 4 C 0.22 5.15 4.28 -5.19 -0.02 5.13 16 5 C -0.53 -14.88 9.94 -34.44 -0.34 -15.22 16 6 H 0.08 2.29 8.06 -52.49 -0.42 1.86 16 7 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 8 N -0.90 -27.11 13.96 55.43 0.77 -26.34 16 9 Si 0.88 21.21 27.47 -169.99 -4.67 16.54 16 10 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.27 -6.03 6.54 56.52 0.37 -5.66 16 13 C 0.52 10.43 6.96 -10.98 -0.08 10.36 16 14 O -0.52 -12.96 16.12 -13.91 -0.22 -13.19 16 15 C 0.06 0.96 1.81 -27.89 -0.05 0.91 16 16 H 0.09 1.07 4.71 -51.93 -0.24 0.82 16 17 C -0.17 -2.28 8.99 37.15 0.33 -1.94 16 18 O -0.28 -4.45 9.39 -38.92 -0.37 -4.81 16 19 C 0.09 1.19 6.54 -39.07 -0.26 0.94 16 20 C -0.17 -1.81 8.46 -39.14 -0.33 -2.15 16 21 C -0.13 -1.14 10.11 -39.47 -0.40 -1.53 16 22 C 0.05 0.47 11.18 -17.54 -0.20 0.28 16 23 N -0.45 -5.57 10.36 -13.13 -0.14 -5.70 16 24 C 0.07 0.95 11.14 -17.37 -0.19 0.75 16 25 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.05 0.56 7.76 -51.93 -0.40 0.16 16 28 H 0.09 1.33 8.09 -51.93 -0.42 0.91 16 29 H 0.07 0.79 4.49 -51.93 -0.23 0.56 16 30 H 0.03 0.74 7.13 -51.93 -0.37 0.37 16 31 H 0.04 0.99 6.78 -51.93 -0.35 0.64 16 32 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 33 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 34 H 0.09 1.01 6.20 -51.93 -0.32 0.69 16 35 H 0.07 0.73 7.40 -51.93 -0.38 0.35 16 36 H 0.14 1.21 5.90 -52.49 -0.31 0.90 16 37 H 0.14 0.76 8.06 -52.49 -0.42 0.34 16 38 H 0.16 1.05 8.06 -52.49 -0.42 0.63 16 39 H 0.17 1.98 8.06 -52.49 -0.42 1.55 16 LS Contribution 324.67 15.07 4.89 4.89 Total: -1.00 -34.65 324.67 -6.60 -41.25 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: -5.17 Total: 0.01 kcal Atomic # 6 Polarization: 0.54 SS G_CDS: -1.27 Total: -0.73 kcal Atomic # 7 Polarization: -44.17 SS G_CDS: 0.21 Total: -43.96 kcal Atomic # 8 Polarization: -17.41 SS G_CDS: -0.59 Total: -18.00 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -4.67 Total: 16.54 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -34.65 -6.60 -41.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117990621.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.975 kcal (2) G-P(sol) polarization free energy of solvation -34.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds