Wall clock time and date at job start Tue Mar 31 2020 00:33:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46498 * 109.46935 * 2 1 4 4 C 1.46505 * 120.00261 * 272.47007 * 3 2 1 5 5 C 1.50699 * 109.46820 * 270.00112 * 4 3 2 6 6 H 1.08000 * 120.00219 * 0.02562 * 5 4 3 7 7 C 1.37880 * 119.99989 * 179.97438 * 5 4 3 8 8 N 1.31513 * 120.00022 * 180.02562 * 7 5 4 9 9 Si 1.86799 * 119.99893 * 0.02562 * 7 5 4 10 10 H 1.48494 * 109.47411 * 89.99629 * 9 7 5 11 11 H 1.48504 * 109.46874 * 210.00007 * 9 7 5 12 12 H 1.48506 * 109.46828 * 329.99395 * 9 7 5 13 13 C 1.34779 * 120.00121 * 92.47106 * 3 2 1 14 14 O 1.21285 * 120.00027 * 185.29931 * 13 3 2 15 15 C 1.50699 * 119.99913 * 5.29686 * 13 3 2 16 16 H 1.09004 * 109.47169 * 314.73318 * 15 13 3 17 17 C 1.52993 * 109.47265 * 74.73428 * 15 13 3 18 18 O 1.42904 * 109.47062 * 194.74117 * 15 13 3 19 19 C 1.35911 * 117.00057 * 156.25796 * 18 15 13 20 20 C 1.39142 * 120.47577 * 357.37016 * 19 18 15 21 21 C 1.38535 * 118.37506 * 180.02562 * 20 19 18 22 22 C 1.38246 * 119.22201 * 359.97438 * 21 20 19 23 23 N 1.31851 * 120.88766 * 359.97438 * 22 21 20 24 24 C 1.31849 * 121.77925 * 359.70779 * 23 22 21 25 25 H 1.09006 * 109.47145 * 59.99724 * 1 2 3 26 26 H 1.08998 * 109.47457 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47014 * 299.99854 * 1 2 3 28 28 H 1.08994 * 109.47084 * 240.00146 * 2 1 3 29 29 H 1.08997 * 109.47033 * 120.00089 * 2 1 3 30 30 H 1.09000 * 109.46733 * 29.99558 * 4 3 2 31 31 H 1.08996 * 109.47250 * 150.00153 * 4 3 2 32 32 H 0.96999 * 119.99542 * 180.02562 * 8 7 5 33 33 H 1.09004 * 109.46782 * 55.21723 * 17 15 13 34 34 H 1.08996 * 109.47403 * 295.21699 * 17 15 13 35 35 H 1.09000 * 109.46893 * 175.21202 * 17 15 13 36 36 H 1.08000 * 120.81177 * 359.97438 * 20 19 18 37 37 H 1.08002 * 120.38524 * 180.02562 * 21 20 19 38 38 H 1.07999 * 119.55698 * 179.97438 * 22 21 20 39 39 H 1.07995 * 119.65824 * 180.28885 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2109 2.0901 -1.2676 5 6 3.6153 1.8600 -1.7634 6 1 4.2961 1.2467 -1.1917 7 6 4.0307 2.4316 -2.9473 8 7 5.2561 2.2304 -3.3803 9 14 2.8530 3.4918 -3.9364 10 1 2.9738 4.9059 -3.4995 11 1 3.1876 3.3892 -5.3796 12 1 1.4611 3.0229 -3.7165 13 6 2.2903 1.9998 1.1661 14 8 2.6020 3.1719 1.1725 15 6 2.2072 1.2351 2.4620 16 1 1.2928 0.6421 2.4760 17 6 3.4181 0.3082 2.5858 18 8 2.1961 2.1533 3.5570 19 6 1.6428 1.7198 4.7202 20 6 1.0683 0.4550 4.8001 21 6 0.5163 0.0576 6.0069 22 6 0.5543 0.9233 7.0841 23 7 1.1074 2.1153 6.9753 24 6 1.6490 2.5290 5.8466 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.4997 1.7167 -2.0043 31 1 2.0497 3.1573 -1.1152 32 1 5.5484 2.6328 -4.2130 33 1 4.3337 0.8914 2.4867 34 1 3.3806 -0.4456 1.7995 35 1 3.4028 -0.1813 3.5596 36 1 1.0524 -0.2006 3.9419 37 1 0.0623 -0.9174 6.1053 38 1 0.1252 0.6192 8.0274 39 1 2.0969 3.5105 5.7971 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000117990621.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:33:21 Heat of formation + Delta-G solvation = -51.019906 kcal Electronic energy + Delta-G solvation = -21830.591186 eV Core-core repulsion = 18545.334544 eV Total energy + Delta-G solvation = -3285.256642 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.97212 -40.83649 -39.06065 -37.13354 -34.96243 -33.37819 -33.12266 -31.83924 -31.03578 -29.57646 -26.19902 -24.97371 -24.49166 -24.20762 -22.98596 -20.23475 -19.61361 -19.11740 -18.19000 -17.78644 -17.36612 -16.95150 -16.82027 -16.16862 -16.02296 -15.32038 -14.96252 -14.86523 -14.66540 -14.56237 -14.31572 -13.98149 -13.86334 -13.54447 -13.38355 -13.24596 -13.10433 -12.68877 -12.57104 -12.49383 -12.19810 -12.06257 -11.87039 -11.75495 -10.85302 -10.81407 -10.65354 -10.56687 -9.53118 -9.45584 -8.35810 -6.41046 0.15988 0.25408 1.30829 1.35906 1.43015 1.52315 1.56166 2.29224 2.50779 2.81439 2.98644 3.31632 3.50427 3.57904 3.76513 3.78213 3.93095 4.02547 4.16361 4.31070 4.34384 4.49219 4.50499 4.63075 4.73659 4.78767 4.85478 4.94637 4.95648 5.04445 5.09396 5.11315 5.35970 5.43314 5.46082 5.56638 6.14231 6.22369 6.55001 6.60747 6.97722 7.14930 7.28031 8.80717 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.030659 B = 0.004163 C = 0.004002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.066414 B = 6723.577644 C = 6995.230065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.085 3.915 3 N -0.590 5.590 4 C 0.225 3.775 5 C -0.538 4.538 6 H 0.035 0.965 7 C 0.014 3.986 8 N -0.942 5.942 9 Si 0.943 3.057 10 H -0.280 1.280 11 H -0.274 1.274 12 H -0.237 1.237 13 C 0.502 3.498 14 O -0.582 6.582 15 C 0.077 3.923 16 H 0.131 0.869 17 C -0.170 4.170 18 O -0.309 6.309 19 C 0.064 3.936 20 C -0.168 4.168 21 C -0.115 4.115 22 C 0.047 3.953 23 N -0.471 5.471 24 C 0.050 3.950 25 H 0.047 0.953 26 H 0.102 0.898 27 H 0.056 0.944 28 H 0.082 0.918 29 H 0.104 0.896 30 H 0.055 0.945 31 H 0.016 0.984 32 H 0.269 0.731 33 H 0.046 0.954 34 H 0.100 0.900 35 H 0.101 0.899 36 H 0.166 0.834 37 H 0.180 0.820 38 H 0.188 0.812 39 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.179 -11.658 15.967 24.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.036 4.036 3 N -0.321 5.321 4 C 0.103 3.897 5 C -0.576 4.576 6 H 0.053 0.947 7 C -0.184 4.184 8 N -0.582 5.582 9 Si 0.766 3.234 10 H -0.205 1.205 11 H -0.199 1.199 12 H -0.160 1.160 13 C 0.290 3.710 14 O -0.461 6.461 15 C 0.018 3.982 16 H 0.148 0.852 17 C -0.227 4.227 18 O -0.221 6.221 19 C 0.017 3.983 20 C -0.195 4.195 21 C -0.135 4.135 22 C -0.110 4.110 23 N -0.181 5.181 24 C -0.108 4.108 25 H 0.067 0.933 26 H 0.121 0.879 27 H 0.075 0.925 28 H 0.100 0.900 29 H 0.122 0.878 30 H 0.073 0.927 31 H 0.034 0.966 32 H 0.078 0.922 33 H 0.065 0.935 34 H 0.119 0.881 35 H 0.120 0.880 36 H 0.183 0.817 37 H 0.198 0.802 38 H 0.205 0.795 39 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -13.803 -10.285 16.466 23.821 hybrid contribution 0.429 0.353 -1.673 1.763 sum -13.373 -9.932 14.793 22.279 Atomic orbital electron populations 1.22207 0.93837 1.04131 1.02098 1.22064 0.95840 0.80818 1.04886 1.47928 1.63567 1.15507 1.05142 1.19356 0.95511 0.92810 0.82035 1.21547 0.97755 1.31665 1.06656 0.94708 1.25794 0.96889 0.97189 0.98573 1.70034 1.19047 1.46148 1.23010 0.85785 0.80675 0.79008 0.77930 1.20550 1.19872 1.15991 1.20727 0.77189 0.87120 0.86002 1.90667 1.49044 1.18823 1.87589 1.22329 1.03103 0.89958 0.82846 0.85200 1.22337 0.95913 0.98967 1.05485 1.86245 1.75599 1.41704 1.18587 1.20462 0.95444 0.95496 0.86941 1.22111 1.00682 0.95161 1.01496 1.22431 0.97246 1.02316 0.91459 1.23319 0.97745 0.89047 1.00888 1.67751 1.08234 1.17831 1.24240 1.22214 1.01131 1.00740 0.86674 0.93331 0.87911 0.92456 0.89951 0.87813 0.92702 0.96625 0.92228 0.93473 0.88101 0.88039 0.81680 0.80247 0.79545 0.82841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.19 10.19 71.98 0.73 -2.46 16 2 C 0.09 2.21 5.68 86.38 0.49 2.70 16 3 N -0.59 -22.98 2.46 -826.16 -2.03 -25.01 16 4 C 0.22 10.77 4.28 85.63 0.37 11.14 16 5 C -0.54 -31.05 9.94 25.60 0.25 -30.80 16 6 H 0.03 2.22 8.06 -2.91 -0.02 2.20 16 7 C 0.01 0.82 5.47 84.66 0.46 1.28 16 8 N -0.94 -58.98 13.96 21.45 0.30 -58.68 16 9 Si 0.94 44.14 27.47 68.60 1.88 46.02 16 10 H -0.28 -13.35 7.11 99.48 0.71 -12.65 16 11 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 12 H -0.24 -9.88 6.54 99.48 0.65 -9.23 16 13 C 0.50 20.68 6.96 87.66 0.61 21.29 16 14 O -0.58 -30.84 16.12 15.56 0.25 -30.59 16 15 C 0.08 2.21 1.81 29.85 0.05 2.27 16 16 H 0.13 2.59 4.71 -2.39 -0.01 2.58 16 17 C -0.17 -4.17 8.99 71.98 0.65 -3.52 16 18 O -0.31 -10.07 9.39 -73.93 -0.69 -10.77 16 19 C 0.06 1.64 6.54 22.60 0.15 1.78 16 20 C -0.17 -2.87 8.46 22.56 0.19 -2.68 16 21 C -0.12 -1.46 10.11 22.34 0.23 -1.23 16 22 C 0.05 0.76 11.18 84.69 0.95 1.71 16 23 N -0.47 -11.20 10.36 -195.45 -2.02 -13.22 16 24 C 0.05 1.31 11.14 84.80 0.94 2.25 16 25 H 0.05 1.10 8.14 -2.38 -0.02 1.08 16 26 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.06 1.05 7.76 -2.39 -0.02 1.03 16 28 H 0.08 2.28 8.09 -2.39 -0.02 2.26 16 29 H 0.10 1.95 4.49 -2.39 -0.01 1.94 16 30 H 0.06 2.38 7.13 -2.39 -0.02 2.37 16 31 H 0.02 0.82 6.78 -2.39 -0.02 0.81 16 32 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 33 H 0.05 1.47 8.14 -2.39 -0.02 1.46 16 34 H 0.10 2.13 6.20 -2.39 -0.01 2.11 16 35 H 0.10 1.84 7.40 -2.39 -0.02 1.82 16 36 H 0.17 1.90 5.90 -2.91 -0.02 1.88 16 37 H 0.18 0.75 8.06 -2.91 -0.02 0.73 16 38 H 0.19 1.71 8.06 -2.91 -0.02 1.68 16 39 H 0.15 4.07 8.06 -2.91 -0.02 4.04 16 Total: -1.00 -82.58 324.67 4.76 -77.82 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: 1.00 Total: 10.69 kcal Atomic # 6 Polarization: -2.34 SS G_CDS: 6.08 Total: 3.73 kcal Atomic # 7 Polarization: -93.16 SS G_CDS: -3.75 Total: -96.91 kcal Atomic # 8 Polarization: -40.91 SS G_CDS: -0.44 Total: -41.36 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 1.88 Total: 46.02 kcal Total: -82.58 4.76 -77.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117990621.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.798 kcal (2) G-P(sol) polarization free energy of solvation -82.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds