Wall clock time and date at job start Tue Mar 31 2020 00:33:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46500 * 109.46811 * 2 1 4 4 C 1.46501 * 119.99877 * 84.28143 * 3 2 1 5 5 C 1.50701 * 109.47118 * 89.99808 * 4 3 2 6 6 H 1.08001 * 120.00174 * 359.97438 * 5 4 3 7 7 C 1.37878 * 119.99689 * 179.97438 * 5 4 3 8 8 N 1.31513 * 119.99929 * 179.97438 * 7 5 4 9 9 Si 1.86800 * 120.00268 * 359.97438 * 7 5 4 10 10 H 1.48497 * 109.47129 * 90.00112 * 9 7 5 11 11 H 1.48503 * 109.47302 * 210.00193 * 9 7 5 12 12 H 1.48506 * 109.47062 * 329.99758 * 9 7 5 13 13 C 1.34779 * 120.00135 * 264.27322 * 3 2 1 14 14 O 1.21279 * 120.00167 * 184.37595 * 13 3 2 15 15 C 1.50693 * 119.99711 * 4.38128 * 13 3 2 16 16 H 1.09004 * 109.47415 * 40.73835 * 15 13 3 17 17 C 1.52999 * 109.47430 * 280.73422 * 15 13 3 18 18 O 1.42899 * 109.47265 * 160.73416 * 15 13 3 19 19 C 1.35910 * 117.00479 * 203.53851 * 18 15 13 20 20 C 1.39142 * 120.47218 * 358.88485 * 19 18 15 21 21 C 1.38536 * 118.37666 * 179.97438 * 20 19 18 22 22 C 1.38255 * 119.21756 * 0.02562 * 21 20 19 23 23 N 1.31848 * 120.89032 * 359.97438 * 22 21 20 24 24 C 1.31843 * 121.77561 * 359.70992 * 23 22 21 25 25 H 1.09006 * 109.47242 * 300.00032 * 1 2 3 26 26 H 1.08998 * 109.47152 * 60.00158 * 1 2 3 27 27 H 1.09001 * 109.47075 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47269 * 239.99711 * 2 1 3 29 29 H 1.08998 * 109.47152 * 119.99842 * 2 1 3 30 30 H 1.09003 * 109.46906 * 209.99442 * 4 3 2 31 31 H 1.09000 * 109.47179 * 329.99445 * 4 3 2 32 32 H 0.97005 * 120.00388 * 179.97438 * 8 7 5 33 33 H 1.09010 * 109.46877 * 53.67340 * 17 15 13 34 34 H 1.08998 * 109.47446 * 173.67498 * 17 15 13 35 35 H 1.08996 * 109.47223 * 293.68244 * 17 15 13 36 36 H 1.08004 * 120.81321 * 359.97438 * 20 19 18 37 37 H 1.07992 * 120.38834 * 180.02562 * 21 20 19 38 38 H 1.08006 * 119.55472 * 179.97438 * 22 21 20 39 39 H 1.08007 * 119.65515 * 180.29181 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1432 2.1140 1.2624 5 6 3.5189 1.8940 1.8369 6 1 4.2291 1.2704 1.3142 7 6 3.8710 2.4889 3.0299 8 7 5.0714 2.2966 3.5315 9 14 2.6430 3.5681 3.9337 10 1 1.8470 2.7348 4.8702 11 1 3.3706 4.6134 4.6973 12 1 1.7352 4.2141 2.9519 13 6 2.3527 1.9778 -1.1614 14 8 2.8313 3.0921 -1.1549 15 6 2.1317 1.2602 -2.4679 16 1 1.1745 0.7396 -2.4392 17 6 3.2567 0.2474 -2.6902 18 8 2.1263 2.2083 -3.5371 19 6 1.4750 1.8512 -4.6753 20 6 0.8688 0.6031 -4.7794 21 6 0.2162 0.2844 -5.9591 22 6 0.1892 1.2092 -6.9865 23 7 0.7738 2.3837 -6.8555 24 6 1.3998 2.7279 -5.7474 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.9909 3.1780 1.0815 31 1 1.3934 1.7543 1.9671 32 1 5.3193 2.7154 4.3706 33 1 3.3335 -0.4068 -1.8216 34 1 3.0389 -0.3491 -3.5761 35 1 4.1992 0.7763 -2.8310 36 1 0.9061 -0.1001 -3.9605 37 1 -0.2657 -0.6751 -6.0748 38 1 -0.3177 0.9662 -7.9087 39 1 1.8630 3.7010 -5.6755 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000117990623.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:33:26 Heat of formation + Delta-G solvation = -26.742321 kcal Electronic energy + Delta-G solvation = -21827.841834 eV Core-core repulsion = 18543.637948 eV Total energy + Delta-G solvation = -3284.203887 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.94267 -39.55901 -37.91461 -35.56046 -32.98840 -32.41450 -31.97877 -30.44530 -30.13955 -27.83223 -24.98374 -23.90256 -23.22269 -23.07611 -21.64597 -18.83629 -18.58754 -17.06399 -16.92684 -16.87417 -16.14312 -15.74713 -15.44023 -14.64200 -14.54307 -14.23271 -13.96156 -13.66801 -13.63406 -13.24430 -12.97212 -12.66066 -12.45171 -12.35421 -12.14673 -11.88091 -11.70838 -11.61886 -11.15854 -11.02155 -10.79359 -10.57296 -10.15265 -9.99155 -9.76570 -9.59594 -9.11915 -8.63481 -8.53454 -7.87264 -6.12768 -4.12079 0.94916 1.07148 2.67399 3.10186 3.23624 3.33041 3.36301 3.62353 3.81701 4.32965 4.35956 4.43666 4.55115 4.61345 4.75243 4.87988 4.93054 5.04167 5.08312 5.20219 5.38215 5.42050 5.47527 5.54284 5.62169 5.78670 5.83239 5.88833 6.03021 6.07591 6.22985 6.27220 6.56728 6.87155 7.07839 7.22784 7.54943 7.78989 8.06005 8.40507 8.77451 8.90396 9.46836 11.00502 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.030242 B = 0.004164 C = 0.004011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.651346 B = 6723.409898 C = 6978.737274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.095 3.905 3 N -0.587 5.587 4 C 0.219 3.781 5 C -0.530 4.530 6 H 0.075 0.925 7 C 0.073 3.927 8 N -0.896 5.896 9 Si 0.874 3.126 10 H -0.275 1.275 11 H -0.283 1.283 12 H -0.264 1.264 13 C 0.513 3.487 14 O -0.511 6.511 15 C 0.065 3.935 16 H 0.091 0.909 17 C -0.178 4.178 18 O -0.276 6.276 19 C 0.090 3.910 20 C -0.173 4.173 21 C -0.130 4.130 22 C 0.049 3.951 23 N -0.447 5.447 24 C 0.073 3.927 25 H 0.063 0.937 26 H 0.049 0.951 27 H 0.064 0.936 28 H 0.071 0.929 29 H 0.089 0.911 30 H 0.041 0.959 31 H 0.029 0.971 32 H 0.265 0.735 33 H 0.086 0.914 34 H 0.068 0.932 35 H 0.080 0.920 36 H 0.141 0.859 37 H 0.137 0.863 38 H 0.156 0.844 39 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.561 -8.610 -15.425 21.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.029 4.029 3 N -0.320 5.320 4 C 0.099 3.901 5 C -0.569 4.569 6 H 0.093 0.907 7 C -0.129 4.129 8 N -0.534 5.534 9 Si 0.700 3.300 10 H -0.201 1.201 11 H -0.208 1.208 12 H -0.188 1.188 13 C 0.297 3.703 14 O -0.386 6.386 15 C 0.005 3.995 16 H 0.108 0.892 17 C -0.235 4.235 18 O -0.186 6.186 19 C 0.041 3.959 20 C -0.199 4.199 21 C -0.150 4.150 22 C -0.108 4.108 23 N -0.156 5.156 24 C -0.086 4.086 25 H 0.082 0.918 26 H 0.068 0.932 27 H 0.083 0.917 28 H 0.090 0.910 29 H 0.107 0.893 30 H 0.059 0.941 31 H 0.047 0.953 32 H 0.075 0.925 33 H 0.105 0.895 34 H 0.087 0.913 35 H 0.099 0.901 36 H 0.159 0.841 37 H 0.154 0.846 38 H 0.173 0.827 39 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -11.094 -7.174 -15.869 20.648 hybrid contribution -0.566 -0.464 1.433 1.609 sum -11.660 -7.639 -14.435 20.067 Atomic orbital electron populations 1.22248 0.96538 1.01805 1.02437 1.21676 0.93774 0.83892 1.03533 1.47851 1.63644 1.13481 1.07057 1.19694 0.97784 0.92885 0.79777 1.21297 0.97598 1.31576 1.06405 0.90666 1.24847 0.95224 0.95833 0.97020 1.69888 1.19110 1.44202 1.20197 0.86882 0.81773 0.81069 0.80248 1.20063 1.20845 1.18841 1.19674 0.79775 0.86711 0.84098 1.90726 1.41831 1.19486 1.86531 1.22441 1.00826 0.90083 0.86182 0.89150 1.22383 0.99247 0.98601 1.03276 1.86287 1.69207 1.42606 1.20544 1.20330 0.92964 0.94151 0.88456 1.21801 1.01281 0.96811 1.00026 1.21979 0.98715 1.00908 0.93358 1.22639 0.99146 0.89719 0.99304 1.67736 1.06692 1.18437 1.22751 1.22266 0.99409 0.99914 0.86990 0.91807 0.93151 0.91706 0.91033 0.89263 0.94121 0.95336 0.92495 0.89496 0.91280 0.90119 0.84115 0.84556 0.82662 0.81750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.98 10.15 37.16 0.38 -1.60 16 2 C 0.09 1.35 5.63 -4.04 -0.02 1.32 16 3 N -0.59 -11.51 2.46 -175.06 -0.43 -11.94 16 4 C 0.22 5.19 4.22 -5.19 -0.02 5.17 16 5 C -0.53 -14.91 9.94 -34.44 -0.34 -15.26 16 6 H 0.08 2.31 8.06 -52.49 -0.42 1.89 16 7 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 8 N -0.90 -27.30 13.96 55.43 0.77 -26.53 16 9 Si 0.87 21.22 27.47 -169.99 -4.67 16.55 16 10 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 11 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.26 -6.27 6.54 56.52 0.37 -5.90 16 13 C 0.51 10.38 6.94 -10.99 -0.08 10.30 16 14 O -0.51 -12.94 16.23 -13.57 -0.22 -13.16 16 15 C 0.06 0.96 1.81 -27.89 -0.05 0.91 16 16 H 0.09 1.07 4.66 -51.93 -0.24 0.83 16 17 C -0.18 -2.23 8.84 37.16 0.33 -1.90 16 18 O -0.28 -4.41 9.42 -38.59 -0.36 -4.78 16 19 C 0.09 1.18 6.60 -39.07 -0.26 0.92 16 20 C -0.17 -1.79 8.40 -39.14 -0.33 -2.12 16 21 C -0.13 -1.13 10.11 -39.47 -0.40 -1.53 16 22 C 0.05 0.47 11.18 -17.54 -0.20 0.28 16 23 N -0.45 -5.54 10.36 -13.12 -0.14 -5.67 16 24 C 0.07 0.94 11.14 -17.38 -0.19 0.75 16 25 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.05 0.55 7.43 -51.93 -0.39 0.17 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.07 0.81 4.51 -51.93 -0.23 0.58 16 29 H 0.09 1.33 8.11 -51.93 -0.42 0.91 16 30 H 0.04 1.06 6.54 -51.93 -0.34 0.72 16 31 H 0.03 0.63 7.50 -51.93 -0.39 0.24 16 32 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 33 H 0.09 1.03 6.16 -51.92 -0.32 0.71 16 34 H 0.07 0.67 7.03 -51.93 -0.37 0.31 16 35 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 36 H 0.14 1.19 5.62 -52.48 -0.29 0.90 16 37 H 0.14 0.75 8.06 -52.49 -0.42 0.33 16 38 H 0.16 1.04 8.06 -52.48 -0.42 0.62 16 39 H 0.17 1.97 8.06 -52.48 -0.42 1.54 16 LS Contribution 323.60 15.07 4.88 4.88 Total: -1.00 -34.96 323.60 -6.57 -41.53 By element: Atomic # 1 Polarization: 4.98 SS G_CDS: -5.12 Total: -0.14 kcal Atomic # 6 Polarization: 0.54 SS G_CDS: -1.28 Total: -0.74 kcal Atomic # 7 Polarization: -44.35 SS G_CDS: 0.21 Total: -44.15 kcal Atomic # 8 Polarization: -17.35 SS G_CDS: -0.58 Total: -17.94 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -4.67 Total: 16.55 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -34.96 -6.57 -41.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117990623.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.789 kcal (2) G-P(sol) polarization free energy of solvation -34.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds