Wall clock time and date at job start Tue Mar 31 2020 00:28:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46504 * 109.47058 * 2 1 4 4 C 1.46503 * 119.99916 * 269.99898 * 3 2 1 5 5 C 1.50701 * 109.47004 * 270.00160 * 4 3 2 6 6 H 1.08000 * 119.99981 * 359.97438 * 5 4 3 7 7 C 1.37878 * 120.00167 * 179.97438 * 5 4 3 8 8 N 1.31514 * 119.99797 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00079 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47298 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47168 * 120.00634 * 9 7 5 12 12 H 1.48508 * 109.46930 * 239.99828 * 9 7 5 13 13 C 1.38427 * 120.00147 * 90.00050 * 3 2 1 14 14 C 1.39423 * 119.53334 * 5.27288 * 13 3 2 15 15 C 1.36830 * 119.38324 * 180.30169 * 14 13 3 16 16 C 1.40409 * 118.48793 * 359.43089 * 15 14 13 17 17 C 1.47403 * 120.47758 * 180.25271 * 16 15 14 18 18 O 1.21515 * 119.99704 * 173.76996 * 17 16 15 19 19 O 1.34755 * 120.00314 * 353.77321 * 17 16 15 20 20 C 1.45195 * 117.00078 * 179.97438 * 19 17 16 21 21 C 1.39622 * 119.04055 * 0.28328 * 16 15 14 22 22 C 1.50694 * 119.74482 * 179.97438 * 21 16 15 23 23 N 1.31664 * 120.50724 * 0.02562 * 21 16 15 24 24 H 1.08992 * 109.46925 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.46629 * 300.00331 * 1 2 3 26 26 H 1.09003 * 109.46460 * 60.00164 * 1 2 3 27 27 H 1.08997 * 109.47384 * 240.00207 * 2 1 3 28 28 H 1.09001 * 109.47189 * 119.99924 * 2 1 3 29 29 H 1.08998 * 109.46975 * 29.99544 * 4 3 2 30 30 H 1.08996 * 109.46981 * 150.00628 * 4 3 2 31 31 H 0.97001 * 119.99896 * 180.02562 * 8 7 5 32 32 H 1.08006 * 120.30552 * 0.03202 * 14 13 3 33 33 H 1.07995 * 120.75645 * 179.70999 * 15 14 13 34 34 H 1.09002 * 109.46949 * 300.00121 * 20 19 17 35 35 H 1.08995 * 109.47253 * 59.99553 * 20 19 17 36 36 H 1.08993 * 109.47439 * 180.02562 * 20 19 17 37 37 H 1.09005 * 109.46934 * 83.41223 * 22 21 16 38 38 H 1.08995 * 109.46914 * 203.40832 * 22 21 16 39 39 H 1.09000 * 109.47302 * 323.41340 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2626 2.0719 -1.2688 5 6 3.6859 1.8350 -1.7038 6 1 4.3429 1.2309 -1.0957 7 6 4.1492 2.3896 -2.8780 8 7 3.3492 3.1256 -3.6181 9 14 5.9137 2.0966 -3.4168 10 1 6.6013 1.2414 -2.4163 11 1 5.9217 1.4170 -4.7372 12 1 6.6206 3.3981 -3.5257 13 6 2.2491 2.0338 1.1988 14 6 2.1201 1.3344 2.3980 15 6 2.3428 1.9841 3.5814 16 6 2.7078 3.3393 3.5431 17 6 2.9636 4.0803 4.7914 18 8 3.3879 5.2181 4.7464 19 8 2.7270 3.4961 5.9824 20 6 3.0022 4.2849 7.1699 21 6 2.8244 3.9751 2.3055 22 6 3.2146 5.4294 2.2458 23 7 2.5949 3.3140 1.1902 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3632 0.5139 0.8900 26 1 -0.3632 0.5138 -0.8901 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.5818 1.6877 -2.0284 30 1 2.0957 3.1410 -1.1384 31 1 3.6751 3.5155 -4.4444 32 1 1.8426 0.2906 2.3930 33 1 2.2445 1.4651 4.5234 34 1 4.0559 4.5639 7.1846 35 1 2.3882 5.1854 7.1582 36 1 2.7698 3.6976 8.0581 37 1 4.2995 5.5172 2.3052 38 1 2.8660 5.8609 1.3076 39 1 2.7607 5.9620 3.0815 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000124116114.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:28:42 Heat of formation + Delta-G solvation = -41.341542 kcal Electronic energy + Delta-G solvation = -21671.982940 eV Core-core repulsion = 18387.145984 eV Total energy + Delta-G solvation = -3284.836956 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -40.53962 -39.42103 -36.78918 -36.04332 -33.00100 -32.47936 -31.74505 -29.91876 -28.18025 -27.42808 -26.28762 -23.78550 -23.37846 -21.60257 -21.29952 -20.02431 -17.59410 -17.02308 -16.62362 -16.24801 -16.20814 -15.81508 -14.70124 -14.42423 -14.29552 -13.88444 -13.75212 -13.35799 -12.83395 -12.79860 -12.68038 -12.49384 -12.09537 -12.03035 -11.99337 -11.69998 -11.48484 -11.22727 -10.96382 -10.70746 -10.68054 -10.59678 -10.17918 -9.97571 -9.90785 -9.41884 -8.97487 -8.78082 -8.46115 -6.99033 -6.06476 -4.13122 1.21849 1.80321 2.90259 2.95887 3.26989 3.35132 3.38526 3.62774 4.33177 4.41880 4.85979 5.01673 5.08995 5.15715 5.17872 5.24840 5.27904 5.40649 5.43325 5.53380 5.56413 5.73200 5.93546 6.02657 6.08517 6.14211 6.15784 6.35412 6.41095 6.49212 6.49760 6.60931 6.88604 7.05789 7.41856 7.73310 7.87889 8.03500 8.12391 8.18132 8.73930 8.92492 9.51587 10.99458 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.018216 B = 0.005009 C = 0.004272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.774659 B = 5588.770343 C = 6553.269450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.114 3.886 3 N -0.567 5.567 4 C 0.247 3.753 5 C -0.525 4.525 6 H 0.056 0.944 7 C 0.064 3.936 8 N -0.893 5.893 9 Si 0.896 3.104 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.282 1.282 13 C 0.453 3.547 14 C -0.277 4.277 15 C 0.022 3.978 16 C -0.286 4.286 17 C 0.522 3.478 18 O -0.519 6.519 19 O -0.363 6.363 20 C 0.039 3.961 21 C 0.258 3.742 22 C -0.110 4.110 23 N -0.530 5.530 24 H 0.061 0.939 25 H 0.053 0.947 26 H 0.060 0.940 27 H 0.086 0.914 28 H 0.070 0.930 29 H 0.031 0.969 30 H 0.054 0.946 31 H 0.263 0.737 32 H 0.133 0.867 33 H 0.135 0.865 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.096 0.904 37 H 0.081 0.919 38 H 0.072 0.928 39 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.387 -3.083 15.668 16.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.010 4.010 3 N -0.270 5.270 4 C 0.128 3.872 5 C -0.564 4.564 6 H 0.075 0.925 7 C -0.139 4.139 8 N -0.532 5.532 9 Si 0.724 3.276 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.208 1.208 13 C 0.213 3.787 14 C -0.302 4.302 15 C -0.003 4.003 16 C -0.293 4.293 17 C 0.370 3.630 18 O -0.409 6.409 19 O -0.280 6.280 20 C -0.055 4.055 21 C 0.113 3.887 22 C -0.167 4.167 23 N -0.248 5.248 24 H 0.080 0.920 25 H 0.072 0.928 26 H 0.080 0.920 27 H 0.105 0.895 28 H 0.088 0.912 29 H 0.049 0.951 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.151 0.849 33 H 0.153 0.847 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.114 0.886 37 H 0.100 0.900 38 H 0.091 0.909 39 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -4.253 -2.401 14.433 15.237 hybrid contribution 1.011 -0.536 0.481 1.241 sum -3.243 -2.937 14.914 15.542 Atomic orbital electron populations 1.22210 0.96420 1.01576 1.02528 1.21503 0.93673 0.82836 1.03023 1.47371 1.62404 1.12279 1.04977 1.19445 0.96246 0.94110 0.77441 1.21437 0.96729 1.31990 1.06280 0.92544 1.24898 0.97744 0.94884 0.96339 1.69937 1.35553 1.33375 1.14288 0.86473 0.84716 0.78092 0.78323 1.19884 1.20978 1.20818 1.18677 0.85470 0.88123 0.86438 1.21120 1.15593 1.01636 0.91860 1.21068 0.88931 0.92274 0.98063 1.19318 1.22988 0.96176 0.90857 1.20967 0.73989 0.84617 0.83474 1.90758 1.43690 1.19060 1.87437 1.86550 1.79720 1.46593 1.15117 1.23160 1.01630 0.96137 0.84615 1.21175 0.85880 0.95907 0.85697 1.21038 1.02534 0.89522 1.03605 1.67460 1.20964 1.07509 1.28913 0.91962 0.92779 0.92039 0.89549 0.91200 0.95117 0.92760 0.92744 0.84937 0.84700 0.92141 0.92142 0.88562 0.90040 0.90908 0.88786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.26 10.24 37.16 0.38 -1.88 16 2 C 0.11 1.80 5.96 -4.04 -0.02 1.77 16 3 N -0.57 -11.63 2.56 -175.24 -0.45 -12.08 16 4 C 0.25 6.18 5.21 -5.19 -0.03 6.15 16 5 C -0.53 -14.42 9.39 -34.44 -0.32 -14.75 16 6 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 7 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 8 N -0.89 -25.88 13.29 55.43 0.74 -25.14 16 9 Si 0.90 21.58 29.54 -169.99 -5.02 16.55 16 10 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 12 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 13 C 0.45 9.11 7.36 -155.29 -1.14 7.97 16 14 C -0.28 -4.50 9.20 -39.65 -0.36 -4.86 16 15 C 0.02 0.33 9.67 -39.27 -0.38 -0.05 16 16 C -0.29 -4.87 5.89 -104.83 -0.62 -5.49 16 17 C 0.52 8.30 7.82 34.46 0.27 8.57 16 18 O -0.52 -8.91 13.15 -19.28 -0.25 -9.16 16 19 O -0.36 -4.83 9.90 -40.64 -0.40 -5.23 16 20 C 0.04 0.37 10.57 101.05 1.07 1.44 16 21 C 0.26 4.94 6.82 -82.15 -0.56 4.38 16 22 C -0.11 -1.90 8.87 36.00 0.32 -1.58 16 23 N -0.53 -11.53 8.95 -8.38 -0.07 -11.61 16 24 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 27 H 0.09 1.41 8.07 -51.93 -0.42 0.99 16 28 H 0.07 0.95 5.94 -51.93 -0.31 0.64 16 29 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16 30 H 0.05 1.51 7.28 -51.93 -0.38 1.13 16 31 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 32 H 0.13 1.79 5.98 -52.48 -0.31 1.47 16 33 H 0.14 1.64 7.71 -52.49 -0.40 1.23 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.08 1.38 8.14 -51.93 -0.42 0.95 16 38 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 39 H 0.09 1.54 5.85 -51.93 -0.30 1.24 16 LS Contribution 331.31 15.07 4.99 4.99 Total: -1.00 -31.33 331.31 -7.44 -38.78 By element: Atomic # 1 Polarization: 5.04 SS G_CDS: -5.47 Total: -0.43 kcal Atomic # 6 Polarization: 4.84 SS G_CDS: -1.50 Total: 3.34 kcal Atomic # 7 Polarization: -49.05 SS G_CDS: 0.21 Total: -48.83 kcal Atomic # 8 Polarization: -13.74 SS G_CDS: -0.66 Total: -14.40 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.33 -7.44 -38.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124116114.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.566 kcal (2) G-P(sol) polarization free energy of solvation -31.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds