Wall clock time and date at job start Tue Mar 31 2020 00:28:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46504 * 109.47058 * 2 1 4 4 C 1.46503 * 119.99916 * 269.99898 * 3 2 1 5 5 C 1.50701 * 109.47004 * 270.00160 * 4 3 2 6 6 H 1.08000 * 119.99981 * 359.97438 * 5 4 3 7 7 C 1.37878 * 120.00167 * 179.97438 * 5 4 3 8 8 N 1.31514 * 119.99797 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00079 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47298 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47168 * 120.00634 * 9 7 5 12 12 H 1.48508 * 109.46930 * 239.99828 * 9 7 5 13 13 C 1.38427 * 120.00147 * 90.00050 * 3 2 1 14 14 C 1.39423 * 119.53334 * 5.27288 * 13 3 2 15 15 C 1.36830 * 119.38324 * 180.30169 * 14 13 3 16 16 C 1.40409 * 118.48793 * 359.43089 * 15 14 13 17 17 C 1.47403 * 120.47758 * 180.25271 * 16 15 14 18 18 O 1.21515 * 119.99704 * 173.76996 * 17 16 15 19 19 O 1.34755 * 120.00314 * 353.77321 * 17 16 15 20 20 C 1.45195 * 117.00078 * 179.97438 * 19 17 16 21 21 C 1.39622 * 119.04055 * 0.28328 * 16 15 14 22 22 C 1.50694 * 119.74482 * 179.97438 * 21 16 15 23 23 N 1.31664 * 120.50724 * 0.02562 * 21 16 15 24 24 H 1.08992 * 109.46925 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.46629 * 300.00331 * 1 2 3 26 26 H 1.09003 * 109.46460 * 60.00164 * 1 2 3 27 27 H 1.08997 * 109.47384 * 240.00207 * 2 1 3 28 28 H 1.09001 * 109.47189 * 119.99924 * 2 1 3 29 29 H 1.08998 * 109.46975 * 29.99544 * 4 3 2 30 30 H 1.08996 * 109.46981 * 150.00628 * 4 3 2 31 31 H 0.97001 * 119.99896 * 180.02562 * 8 7 5 32 32 H 1.08006 * 120.30552 * 0.03202 * 14 13 3 33 33 H 1.07995 * 120.75645 * 179.70999 * 15 14 13 34 34 H 1.09002 * 109.46949 * 300.00121 * 20 19 17 35 35 H 1.08995 * 109.47253 * 59.99553 * 20 19 17 36 36 H 1.08993 * 109.47439 * 180.02562 * 20 19 17 37 37 H 1.09005 * 109.46934 * 83.41223 * 22 21 16 38 38 H 1.08995 * 109.46914 * 203.40832 * 22 21 16 39 39 H 1.09000 * 109.47302 * 323.41340 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2626 2.0719 -1.2688 5 6 3.6859 1.8350 -1.7038 6 1 4.3429 1.2309 -1.0957 7 6 4.1492 2.3896 -2.8780 8 7 3.3492 3.1256 -3.6181 9 14 5.9137 2.0966 -3.4168 10 1 6.6013 1.2414 -2.4163 11 1 5.9217 1.4170 -4.7372 12 1 6.6206 3.3981 -3.5257 13 6 2.2491 2.0338 1.1988 14 6 2.1201 1.3344 2.3980 15 6 2.3428 1.9841 3.5814 16 6 2.7078 3.3393 3.5431 17 6 2.9636 4.0803 4.7914 18 8 3.3879 5.2181 4.7464 19 8 2.7270 3.4961 5.9824 20 6 3.0022 4.2849 7.1699 21 6 2.8244 3.9751 2.3055 22 6 3.2146 5.4294 2.2458 23 7 2.5949 3.3140 1.1902 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3632 0.5139 0.8900 26 1 -0.3632 0.5138 -0.8901 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.5818 1.6877 -2.0284 30 1 2.0957 3.1410 -1.1384 31 1 3.6751 3.5155 -4.4444 32 1 1.8426 0.2906 2.3930 33 1 2.2445 1.4651 4.5234 34 1 4.0559 4.5639 7.1846 35 1 2.3882 5.1854 7.1582 36 1 2.7698 3.6976 8.0581 37 1 4.2995 5.5172 2.3052 38 1 2.8660 5.8609 1.3076 39 1 2.7607 5.9620 3.0815 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000124116114.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:28:39 Heat of formation + Delta-G solvation = -58.887466 kcal Electronic energy + Delta-G solvation = -21672.743789 eV Core-core repulsion = 18387.145984 eV Total energy + Delta-G solvation = -3285.597805 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 5.88 seconds Orbital eigenvalues (eV) -41.83836 -40.71152 -38.16825 -37.28614 -34.95284 -33.93657 -33.06508 -31.46302 -29.38578 -28.92937 -27.62833 -25.40233 -24.82192 -22.92167 -22.71101 -21.39682 -18.81409 -18.68612 -18.21554 -17.76795 -17.34659 -17.21261 -16.46376 -15.94112 -15.52533 -15.31249 -14.86035 -14.78001 -14.23873 -14.10883 -14.00597 -13.77295 -13.73810 -13.38977 -13.18095 -13.01384 -12.93779 -12.79073 -12.66942 -12.48043 -12.19831 -11.83021 -11.77167 -11.68464 -11.19655 -10.97563 -10.63012 -10.46783 -10.20721 -8.57758 -8.11056 -6.33623 -0.14167 0.48659 1.35493 1.37829 1.48737 1.66013 1.81959 2.18071 2.40447 2.95722 3.09880 3.46584 3.80469 3.99078 4.00090 4.16163 4.25666 4.38989 4.40633 4.42252 4.55993 4.70156 4.73064 4.77027 4.79954 4.84886 4.95308 5.03908 5.13021 5.13984 5.19690 5.27327 5.37770 5.46403 5.61495 5.73679 6.06154 6.19946 6.51516 6.78362 6.84050 7.30895 7.38871 8.86476 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.018216 B = 0.005009 C = 0.004272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.774659 B = 5588.770343 C = 6553.269450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.109 3.891 3 N -0.583 5.583 4 C 0.268 3.732 5 C -0.534 4.534 6 H 0.048 0.952 7 C 0.013 3.987 8 N -0.926 5.926 9 Si 0.961 3.039 10 H -0.270 1.270 11 H -0.272 1.272 12 H -0.282 1.282 13 C 0.427 3.573 14 C -0.264 4.264 15 C 0.033 3.967 16 C -0.284 4.284 17 C 0.526 3.474 18 O -0.536 6.536 19 O -0.358 6.358 20 C 0.031 3.969 21 C 0.232 3.768 22 C -0.102 4.102 23 N -0.578 5.578 24 H 0.096 0.904 25 H 0.056 0.944 26 H 0.037 0.963 27 H 0.074 0.926 28 H 0.100 0.900 29 H 0.014 0.986 30 H 0.016 0.984 31 H 0.266 0.734 32 H 0.167 0.833 33 H 0.177 0.823 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.134 0.866 37 H 0.080 0.920 38 H 0.060 0.940 39 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.138 -4.967 18.310 19.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.013 4.013 3 N -0.288 5.288 4 C 0.147 3.853 5 C -0.573 4.573 6 H 0.066 0.934 7 C -0.186 4.186 8 N -0.566 5.566 9 Si 0.786 3.214 10 H -0.195 1.195 11 H -0.197 1.197 12 H -0.208 1.208 13 C 0.188 3.812 14 C -0.288 4.288 15 C 0.008 3.992 16 C -0.292 4.292 17 C 0.374 3.626 18 O -0.428 6.428 19 O -0.275 6.275 20 C -0.062 4.062 21 C 0.089 3.911 22 C -0.159 4.159 23 N -0.297 5.297 24 H 0.115 0.885 25 H 0.075 0.925 26 H 0.056 0.944 27 H 0.093 0.907 28 H 0.118 0.882 29 H 0.032 0.968 30 H 0.034 0.966 31 H 0.075 0.925 32 H 0.184 0.816 33 H 0.194 0.806 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.152 0.848 37 H 0.098 0.902 38 H 0.079 0.921 39 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -4.014 -4.298 17.130 18.111 hybrid contribution 0.906 0.093 -0.154 0.924 sum -3.108 -4.205 16.976 17.763 Atomic orbital electron populations 1.22131 0.94597 1.03454 1.01508 1.21762 0.95122 0.80527 1.03903 1.47236 1.64137 1.13792 1.03591 1.18777 0.94731 0.92343 0.79458 1.21677 0.97780 1.31572 1.06234 0.93373 1.25729 1.01778 0.94639 0.96495 1.70049 1.37440 1.34335 1.14771 0.85471 0.79735 0.77917 0.78283 1.19488 1.19681 1.20800 1.19084 0.86483 0.88149 0.87460 1.21389 1.14154 1.02889 0.90389 1.21489 0.87036 0.91320 0.99311 1.19519 1.21708 0.97231 0.90705 1.20756 0.73622 0.84162 0.84089 1.90749 1.44401 1.19806 1.87859 1.86518 1.79105 1.46803 1.15052 1.23538 1.01811 0.96830 0.84055 1.21400 0.86938 0.96472 0.86276 1.20983 1.02405 0.89251 1.03256 1.67341 1.22404 1.09146 1.30823 0.88498 0.92459 0.94374 0.90723 0.88155 0.96821 0.96614 0.92538 0.81569 0.80615 0.92147 0.92010 0.84787 0.90160 0.92081 0.87964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.02 10.24 71.98 0.74 -3.28 16 2 C 0.11 3.33 5.96 86.38 0.52 3.85 16 3 N -0.58 -24.27 2.56 -708.33 -1.81 -26.09 16 4 C 0.27 14.12 5.21 85.63 0.45 14.57 16 5 C -0.53 -30.23 9.39 25.60 0.24 -29.98 16 6 H 0.05 2.74 7.81 -2.91 -0.02 2.72 16 7 C 0.01 0.72 5.46 84.65 0.46 1.18 16 8 N -0.93 -55.41 13.29 21.45 0.28 -55.12 16 9 Si 0.96 44.89 29.54 68.60 2.03 46.92 16 10 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 11 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 12 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 13 C 0.43 17.15 7.36 133.27 0.98 18.13 16 14 C -0.26 -7.87 9.20 22.23 0.20 -7.66 16 15 C 0.03 0.89 9.67 22.47 0.22 1.11 16 16 C -0.28 -9.25 5.89 -20.00 -0.12 -9.37 16 17 C 0.53 15.68 7.82 70.24 0.55 16.23 16 18 O -0.54 -17.79 13.15 19.79 0.26 -17.53 16 19 O -0.36 -8.34 9.90 -56.66 -0.56 -8.90 16 20 C 0.03 0.49 10.57 113.37 1.20 1.68 16 21 C 0.23 9.02 6.82 42.92 0.29 9.31 16 22 C -0.10 -3.65 8.87 71.23 0.63 -3.02 16 23 N -0.58 -25.97 8.95 -180.41 -1.62 -27.58 16 24 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 25 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 26 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 27 H 0.07 2.42 8.07 -2.39 -0.02 2.40 16 28 H 0.10 2.41 5.94 -2.39 -0.01 2.39 16 29 H 0.01 0.75 8.07 -2.39 -0.02 0.73 16 30 H 0.02 0.94 7.28 -2.39 -0.02 0.92 16 31 H 0.27 14.94 8.31 -92.71 -0.77 14.17 16 32 H 0.17 3.74 5.98 -2.91 -0.02 3.72 16 33 H 0.18 3.32 7.71 -2.91 -0.02 3.30 16 34 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.13 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.08 2.82 8.14 -2.38 -0.02 2.80 16 38 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 39 H 0.10 3.42 5.85 -2.39 -0.01 3.40 16 Total: -1.00 -70.88 331.31 5.99 -64.88 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: 1.05 Total: 10.68 kcal Atomic # 6 Polarization: 6.39 SS G_CDS: 6.36 Total: 12.75 kcal Atomic # 7 Polarization: -105.65 SS G_CDS: -3.14 Total: -108.79 kcal Atomic # 8 Polarization: -26.13 SS G_CDS: -0.30 Total: -26.44 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -70.88 5.99 -64.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124116114.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.997 kcal (2) G-P(sol) polarization free energy of solvation -70.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.89 seconds