Wall clock time and date at job start Tue Mar 31 2020 01:40:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46509 * 119.99682 * 2 1 4 4 C 1.50699 * 109.46773 * 269.99490 * 3 2 1 5 5 H 1.07999 * 120.00127 * 0.02562 * 4 3 2 6 6 C 1.37877 * 119.99655 * 180.02562 * 4 3 2 7 7 N 1.31512 * 120.00383 * 0.02562 * 6 4 3 8 8 Si 1.86807 * 119.99962 * 180.02562 * 6 4 3 9 9 H 1.48502 * 109.46940 * 359.97438 * 8 6 4 10 10 H 1.48492 * 109.47388 * 120.00146 * 8 6 4 11 11 H 1.48501 * 109.46877 * 240.00262 * 8 6 4 12 12 C 1.34779 * 120.00250 * 179.97438 * 2 1 3 13 13 O 1.21494 * 119.99603 * 183.02046 * 12 2 1 14 14 C 1.48327 * 120.00135 * 3.01661 * 12 2 1 15 15 N 1.31347 * 127.12805 * 354.83935 * 14 12 2 16 16 O 1.21239 * 111.48577 * 179.97438 * 15 14 12 17 17 C 1.33644 * 111.63942 * 359.62292 * 16 15 14 18 18 C 1.34989 * 106.59872 * 0.67736 * 17 16 15 19 19 C 1.50085 * 126.60069 * 179.23181 * 18 17 16 20 20 C 1.53334 * 109.03445 * 27.93143 * 19 18 17 21 21 C 1.52548 * 109.60332 * 271.61454 * 20 19 18 22 22 C 1.52627 * 110.99027 * 61.27817 * 21 20 19 23 23 C 1.50613 * 127.99679 * 181.61656 * 17 16 15 24 24 H 1.08994 * 109.47348 * 263.96675 * 1 2 3 25 25 H 1.08999 * 109.46880 * 23.97184 * 1 2 3 26 26 H 1.09003 * 109.46480 * 143.96376 * 1 2 3 27 27 H 1.08992 * 109.47385 * 29.99731 * 3 2 1 28 28 H 1.09001 * 109.46927 * 150.00055 * 3 2 1 29 29 H 0.96999 * 120.00433 * 179.97438 * 7 6 4 30 30 H 1.09000 * 109.55920 * 147.82695 * 19 18 17 31 31 H 1.09006 * 109.55697 * 268.04147 * 19 18 17 32 32 H 1.08999 * 109.46115 * 31.54435 * 20 19 18 33 33 H 1.08998 * 109.45842 * 151.50310 * 20 19 18 34 34 H 1.09001 * 109.09944 * 300.92169 * 21 20 19 35 35 H 1.08997 * 109.20158 * 181.70593 * 21 20 19 36 36 H 1.08993 * 109.40676 * 273.58771 * 22 21 20 37 37 H 1.09004 * 109.33027 * 153.79324 * 22 21 20 38 38 H 1.08997 * 109.53325 * 345.79607 * 23 17 16 39 39 H 1.09000 * 109.53678 * 105.96048 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4487 1.7038 -1.4208 5 1 2.0975 1.0961 -2.2417 6 6 3.1269 2.8775 -1.6728 7 7 3.5550 3.6172 -0.6732 8 14 3.4377 3.4170 -3.4340 9 1 2.8598 2.4169 -4.3674 10 1 2.8007 4.7380 -3.6668 11 1 4.9002 3.5246 -3.6679 12 6 2.1389 -1.1672 0.0005 13 8 3.3526 -1.1678 0.0560 14 6 1.3989 -2.4509 -0.0665 15 7 0.0965 -2.6177 -0.0359 16 8 -0.2029 -3.7903 -0.1099 17 6 0.8782 -4.5696 -0.2090 18 6 1.9495 -3.7490 -0.1756 19 6 3.3922 -4.1579 -0.2394 20 6 3.5050 -5.4741 -1.0178 21 6 3.3479 -6.6505 -0.0594 22 6 1.9783 -6.6282 0.6138 23 6 0.9310 -6.0678 -0.3542 24 1 -0.3634 -0.1080 1.0219 25 1 -0.3633 0.9390 -0.4175 26 1 -0.3632 -0.8311 -0.6046 27 1 1.6084 2.0284 0.5137 28 1 3.1499 1.1385 0.5138 29 1 4.0324 4.4427 -0.8505 30 1 3.9687 -3.3838 -0.7459 31 1 3.7770 -4.2972 0.7709 32 1 2.7212 -5.5171 -1.7740 33 1 4.4800 -5.5271 -1.5022 34 1 4.1235 -6.5943 0.7045 35 1 3.4593 -7.5822 -0.6141 36 1 2.0221 -5.9997 1.5032 37 1 1.7005 -7.6425 0.9003 38 1 -0.0455 -6.4913 -0.1197 39 1 1.2040 -6.3255 -1.3775 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000129672336.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:40:25 Heat of formation + Delta-G solvation = 22.712497 kcal Electronic energy + Delta-G solvation = -22080.194713 eV Core-core repulsion = 18798.135348 eV Total energy + Delta-G solvation = -3282.059365 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -44.89241 -38.89152 -38.22718 -34.92645 -33.92182 -32.60113 -31.94473 -31.18179 -27.91063 -26.48887 -25.81509 -24.93074 -24.23708 -22.08522 -20.84288 -19.87140 -18.75942 -17.69261 -16.94376 -16.51594 -16.31513 -15.41929 -15.24997 -14.96312 -14.40175 -14.18872 -13.83804 -13.53235 -13.37601 -12.78267 -12.64915 -12.36896 -12.31280 -12.09590 -12.04941 -11.39325 -11.32326 -11.14238 -11.05249 -10.90637 -10.68562 -10.59364 -10.45916 -10.17423 -9.98382 -9.62484 -9.27797 -8.99685 -8.46054 -7.70377 -6.06701 -4.11891 1.38403 1.91870 3.02442 3.29096 3.36206 3.40636 3.66227 3.84419 4.27564 4.42091 4.54256 4.59791 4.68751 4.80830 4.89880 5.02845 5.16419 5.21139 5.27390 5.46101 5.55807 5.59445 5.65795 5.76677 5.81426 5.89317 5.93916 6.01012 6.07025 6.09931 6.19318 6.41093 6.44832 7.00782 7.37638 7.47132 7.89035 8.18254 8.19032 8.33220 8.81069 8.97570 9.53182 11.01455 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.026048 B = 0.004516 C = 0.004186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.677155 B = 6199.271283 C = 6686.681749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.582 5.582 3 C 0.244 3.756 4 C -0.528 4.528 5 H 0.058 0.942 6 C 0.062 3.938 7 N -0.894 5.894 8 Si 0.899 3.101 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.282 1.282 12 C 0.581 3.419 13 O -0.524 6.524 14 C -0.005 4.005 15 N -0.334 5.334 16 O 0.109 5.891 17 C -0.047 4.047 18 C -0.146 4.146 19 C -0.047 4.047 20 C -0.125 4.125 21 C -0.122 4.122 22 C -0.117 4.117 23 C -0.035 4.035 24 H 0.046 0.954 25 H 0.075 0.925 26 H 0.076 0.924 27 H 0.037 0.963 28 H 0.048 0.952 29 H 0.264 0.736 30 H 0.093 0.907 31 H 0.080 0.920 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.066 0.934 35 H 0.063 0.937 36 H 0.069 0.931 37 H 0.075 0.925 38 H 0.086 0.914 39 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.393 -21.128 1.605 21.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.313 5.313 3 C 0.125 3.875 4 C -0.567 4.567 5 H 0.076 0.924 6 C -0.140 4.140 7 N -0.532 5.532 8 Si 0.727 3.273 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.208 1.208 12 C 0.365 3.635 13 O -0.400 6.400 14 C -0.164 4.164 15 N -0.040 5.040 16 O 0.039 5.961 17 C -0.110 4.110 18 C -0.151 4.151 19 C -0.085 4.085 20 C -0.162 4.162 21 C -0.159 4.159 22 C -0.154 4.154 23 C -0.073 4.073 24 H 0.064 0.936 25 H 0.093 0.907 26 H 0.094 0.906 27 H 0.055 0.945 28 H 0.066 0.934 29 H 0.073 0.927 30 H 0.112 0.888 31 H 0.099 0.901 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.088 0.912 37 H 0.093 0.907 38 H 0.104 0.896 39 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -5.660 -20.024 1.782 20.884 hybrid contribution 0.684 0.281 -0.989 1.235 sum -4.976 -19.743 0.793 20.375 Atomic orbital electron populations 1.21934 0.80435 1.03279 1.00957 1.48094 1.06942 1.07224 1.69071 1.19425 0.92686 0.77499 0.97858 1.21451 1.36666 1.06497 0.92093 0.92356 1.24930 0.95236 0.96260 0.97571 1.69940 1.38239 1.14354 1.30712 0.86417 0.78097 0.78354 0.84431 1.19793 1.20867 1.20779 1.16898 0.86388 0.81320 0.78896 1.90737 1.12385 1.86084 1.50810 1.23637 0.89826 0.97174 1.05748 1.74591 1.15919 0.95737 1.17740 1.84753 1.33134 1.12111 1.66132 1.24005 0.85375 0.96166 1.05475 1.20659 0.98176 0.90293 1.05970 1.19986 0.89322 0.97497 1.01648 1.21728 1.02512 0.93744 0.98240 1.21533 0.96967 0.98413 0.99037 1.21580 0.94190 1.01260 0.98398 1.20204 1.01176 0.84044 1.01855 0.93592 0.90674 0.90579 0.94510 0.93441 0.92681 0.88818 0.90124 0.91352 0.91078 0.91515 0.91831 0.91232 0.90654 0.89560 0.88443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.49 9.65 59.85 0.58 2.07 16 2 N -0.58 -13.64 2.86 -183.90 -0.53 -14.16 16 3 C 0.24 6.63 5.16 -5.19 -0.03 6.60 16 4 C -0.53 -15.37 9.39 -34.44 -0.32 -15.69 16 5 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 6 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 7 N -0.89 -26.78 13.29 55.43 0.74 -26.04 16 8 Si 0.90 22.12 29.54 -169.99 -5.02 17.10 16 9 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 12 C 0.58 13.43 7.70 -12.11 -0.09 13.33 16 13 O -0.52 -13.51 15.12 5.37 0.08 -13.43 16 14 C -0.01 -0.10 6.87 -82.71 -0.57 -0.66 16 15 N -0.33 -5.74 8.75 33.31 0.29 -5.45 16 16 O 0.11 1.57 11.19 18.12 0.20 1.77 16 17 C -0.05 -0.59 6.64 -35.50 -0.24 -0.82 16 18 C -0.15 -2.26 5.73 -104.86 -0.60 -2.86 16 19 C -0.05 -0.64 5.34 -28.01 -0.15 -0.79 16 20 C -0.12 -1.22 5.55 -26.79 -0.15 -1.37 16 21 C -0.12 -0.91 5.63 -27.15 -0.15 -1.06 16 22 C -0.12 -0.84 5.63 -26.81 -0.15 -1.00 16 23 C -0.03 -0.28 5.55 -27.81 -0.15 -0.43 16 24 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 25 H 0.07 1.41 8.03 -51.93 -0.42 0.99 16 26 H 0.08 1.39 5.40 -51.93 -0.28 1.11 16 27 H 0.04 1.00 8.07 -51.93 -0.42 0.58 16 28 H 0.05 1.42 7.38 -51.93 -0.38 1.04 16 29 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 30 H 0.09 1.54 7.17 -51.93 -0.37 1.17 16 31 H 0.08 1.06 7.84 -51.93 -0.41 0.65 16 32 H 0.07 0.66 5.69 -51.93 -0.30 0.36 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.50 8.09 -51.93 -0.42 0.08 16 35 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.07 0.60 7.79 -51.93 -0.40 0.20 16 37 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.10 0.67 6.38 -51.93 -0.33 0.34 16 LS Contribution 314.99 15.07 4.75 4.75 Total: -1.00 -33.02 314.99 -7.00 -40.02 By element: Atomic # 1 Polarization: 1.81 SS G_CDS: -5.39 Total: -3.57 kcal Atomic # 6 Polarization: 1.14 SS G_CDS: -2.12 Total: -0.98 kcal Atomic # 7 Polarization: -46.16 SS G_CDS: 0.50 Total: -45.65 kcal Atomic # 8 Polarization: -11.94 SS G_CDS: 0.28 Total: -11.66 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -33.02 -7.00 -40.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129672336.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.734 kcal (2) G-P(sol) polarization free energy of solvation -33.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.021 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds