Wall clock time and date at job start Tue Mar 31 2020 01:40:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46509 * 119.99682 * 2 1 4 4 C 1.50699 * 109.46773 * 269.99490 * 3 2 1 5 5 H 1.07999 * 120.00127 * 0.02562 * 4 3 2 6 6 C 1.37877 * 119.99655 * 180.02562 * 4 3 2 7 7 N 1.31512 * 120.00383 * 0.02562 * 6 4 3 8 8 Si 1.86807 * 119.99962 * 180.02562 * 6 4 3 9 9 H 1.48502 * 109.46940 * 359.97438 * 8 6 4 10 10 H 1.48492 * 109.47388 * 120.00146 * 8 6 4 11 11 H 1.48501 * 109.46877 * 240.00262 * 8 6 4 12 12 C 1.34779 * 120.00250 * 179.97438 * 2 1 3 13 13 O 1.21494 * 119.99603 * 183.02046 * 12 2 1 14 14 C 1.48327 * 120.00135 * 3.01661 * 12 2 1 15 15 N 1.31347 * 127.12805 * 354.83935 * 14 12 2 16 16 O 1.21239 * 111.48577 * 179.97438 * 15 14 12 17 17 C 1.33644 * 111.63942 * 359.62292 * 16 15 14 18 18 C 1.34989 * 106.59872 * 0.67736 * 17 16 15 19 19 C 1.50085 * 126.60069 * 179.23181 * 18 17 16 20 20 C 1.53334 * 109.03445 * 27.93143 * 19 18 17 21 21 C 1.52548 * 109.60332 * 271.61454 * 20 19 18 22 22 C 1.52627 * 110.99027 * 61.27817 * 21 20 19 23 23 C 1.50613 * 127.99679 * 181.61656 * 17 16 15 24 24 H 1.08994 * 109.47348 * 263.96675 * 1 2 3 25 25 H 1.08999 * 109.46880 * 23.97184 * 1 2 3 26 26 H 1.09003 * 109.46480 * 143.96376 * 1 2 3 27 27 H 1.08992 * 109.47385 * 29.99731 * 3 2 1 28 28 H 1.09001 * 109.46927 * 150.00055 * 3 2 1 29 29 H 0.96999 * 120.00433 * 179.97438 * 7 6 4 30 30 H 1.09000 * 109.55920 * 147.82695 * 19 18 17 31 31 H 1.09006 * 109.55697 * 268.04147 * 19 18 17 32 32 H 1.08999 * 109.46115 * 31.54435 * 20 19 18 33 33 H 1.08998 * 109.45842 * 151.50310 * 20 19 18 34 34 H 1.09001 * 109.09944 * 300.92169 * 21 20 19 35 35 H 1.08997 * 109.20158 * 181.70593 * 21 20 19 36 36 H 1.08993 * 109.40676 * 273.58771 * 22 21 20 37 37 H 1.09004 * 109.33027 * 153.79324 * 22 21 20 38 38 H 1.08997 * 109.53325 * 345.79607 * 23 17 16 39 39 H 1.09000 * 109.53678 * 105.96048 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4487 1.7038 -1.4208 5 1 2.0975 1.0961 -2.2417 6 6 3.1269 2.8775 -1.6728 7 7 3.5550 3.6172 -0.6732 8 14 3.4377 3.4170 -3.4340 9 1 2.8598 2.4169 -4.3674 10 1 2.8007 4.7380 -3.6668 11 1 4.9002 3.5246 -3.6679 12 6 2.1389 -1.1672 0.0005 13 8 3.3526 -1.1678 0.0560 14 6 1.3989 -2.4509 -0.0665 15 7 0.0965 -2.6177 -0.0359 16 8 -0.2029 -3.7903 -0.1099 17 6 0.8782 -4.5696 -0.2090 18 6 1.9495 -3.7490 -0.1756 19 6 3.3922 -4.1579 -0.2394 20 6 3.5050 -5.4741 -1.0178 21 6 3.3479 -6.6505 -0.0594 22 6 1.9783 -6.6282 0.6138 23 6 0.9310 -6.0678 -0.3542 24 1 -0.3634 -0.1080 1.0219 25 1 -0.3633 0.9390 -0.4175 26 1 -0.3632 -0.8311 -0.6046 27 1 1.6084 2.0284 0.5137 28 1 3.1499 1.1385 0.5138 29 1 4.0324 4.4427 -0.8505 30 1 3.9687 -3.3838 -0.7459 31 1 3.7770 -4.2972 0.7709 32 1 2.7212 -5.5171 -1.7740 33 1 4.4800 -5.5271 -1.5022 34 1 4.1235 -6.5943 0.7045 35 1 3.4593 -7.5822 -0.6141 36 1 2.0221 -5.9997 1.5032 37 1 1.7005 -7.6425 0.9003 38 1 -0.0455 -6.4913 -0.1197 39 1 1.2040 -6.3255 -1.3775 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000129672336.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:40:24 Heat of formation + Delta-G solvation = 2.247418 kcal Electronic energy + Delta-G solvation = -22081.082145 eV Core-core repulsion = 18798.135348 eV Total energy + Delta-G solvation = -3282.946797 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -46.18741 -40.70917 -39.07681 -36.84014 -35.30748 -34.63110 -32.91380 -32.22229 -29.97513 -27.87708 -27.11232 -26.09325 -25.74544 -23.85737 -22.04229 -20.63595 -20.24116 -19.01329 -18.73096 -18.28108 -17.77301 -17.17763 -16.39311 -16.33258 -16.06981 -15.71956 -14.95566 -14.53080 -14.41776 -14.34815 -14.22777 -13.95003 -13.78772 -13.36689 -13.32571 -13.03300 -12.84052 -12.67527 -12.42986 -12.25773 -12.09759 -11.79651 -11.77214 -11.51129 -11.31026 -11.28701 -11.04645 -10.71101 -10.08709 -9.64328 -8.29749 -6.45613 0.06069 0.65962 1.33507 1.35605 1.47960 1.84494 2.05988 2.13657 2.35025 2.86073 3.00343 3.46584 3.65785 3.90894 3.96176 4.02493 4.15701 4.25107 4.33623 4.40180 4.45274 4.52695 4.75451 4.82161 4.82694 4.88769 4.93762 4.96128 5.08240 5.08807 5.21165 5.29523 5.37266 5.41731 5.44883 5.54752 5.68486 5.94286 6.41832 6.61047 6.93411 7.10394 7.26697 8.78355 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.026048 B = 0.004516 C = 0.004186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.677155 B = 6199.271283 C = 6686.681749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.593 5.593 3 C 0.259 3.741 4 C -0.550 4.550 5 H 0.050 0.950 6 C 0.012 3.988 7 N -0.925 5.925 8 Si 0.972 3.028 9 H -0.270 1.270 10 H -0.266 1.266 11 H -0.276 1.276 12 C 0.574 3.426 13 O -0.566 6.566 14 C -0.041 4.041 15 N -0.342 5.342 16 O 0.131 5.869 17 C -0.016 4.016 18 C -0.166 4.166 19 C -0.046 4.046 20 C -0.119 4.119 21 C -0.119 4.119 22 C -0.115 4.115 23 C -0.035 4.035 24 H 0.064 0.936 25 H 0.076 0.924 26 H 0.088 0.912 27 H 0.030 0.970 28 H 0.007 0.993 29 H 0.270 0.730 30 H 0.053 0.947 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.064 0.936 35 H 0.090 0.910 36 H 0.050 0.950 37 H 0.108 0.892 38 H 0.117 0.883 39 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.807 -24.043 0.359 24.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.324 5.324 3 C 0.139 3.861 4 C -0.588 4.588 5 H 0.068 0.932 6 C -0.188 4.188 7 N -0.564 5.564 8 Si 0.796 3.204 9 H -0.195 1.195 10 H -0.191 1.191 11 H -0.202 1.202 12 C 0.360 3.640 13 O -0.445 6.445 14 C -0.197 4.197 15 N -0.043 5.043 16 O 0.056 5.944 17 C -0.080 4.080 18 C -0.171 4.171 19 C -0.083 4.083 20 C -0.156 4.156 21 C -0.156 4.156 22 C -0.152 4.152 23 C -0.072 4.072 24 H 0.083 0.917 25 H 0.095 0.905 26 H 0.106 0.894 27 H 0.048 0.952 28 H 0.026 0.974 29 H 0.079 0.921 30 H 0.072 0.928 31 H 0.096 0.904 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.083 0.917 35 H 0.108 0.892 36 H 0.069 0.931 37 H 0.126 0.874 38 H 0.135 0.865 39 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -7.101 -22.914 0.550 23.996 hybrid contribution 1.088 1.101 -0.536 1.638 sum -6.013 -21.814 0.014 22.627 Atomic orbital electron populations 1.22069 0.77815 1.03837 1.02413 1.48108 1.08569 1.06307 1.69390 1.18944 0.91276 0.79150 0.96768 1.21635 1.37626 1.07062 0.92464 0.93218 1.25863 0.94488 0.96040 1.02366 1.70047 1.38436 1.14812 1.33093 0.85305 0.78151 0.78415 0.78553 1.19452 1.19055 1.20195 1.17433 0.86288 0.82557 0.77674 1.90691 1.14300 1.87034 1.52435 1.23166 0.90867 0.96379 1.09294 1.74521 1.14869 0.97201 1.17758 1.84722 1.33583 1.11414 1.64676 1.24819 0.83347 0.97843 1.01999 1.20898 0.99731 0.89331 1.07156 1.19980 0.87980 0.98628 1.01749 1.21724 1.03087 0.92338 0.98441 1.21532 0.97289 0.98110 0.98674 1.21618 0.93684 1.02617 0.97328 1.20591 1.03297 0.80019 1.03328 0.91727 0.90527 0.89433 0.95156 0.97441 0.92084 0.92819 0.90367 0.90714 0.90650 0.91743 0.89155 0.93067 0.87409 0.86465 0.86323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 3.15 9.65 127.77 1.23 4.39 16 2 N -0.59 -29.18 2.86 -854.02 -2.44 -31.62 16 3 C 0.26 14.91 5.16 85.63 0.44 15.35 16 4 C -0.55 -33.17 9.39 25.60 0.24 -32.93 16 5 H 0.05 3.01 7.81 -2.91 -0.02 2.99 16 6 C 0.01 0.71 5.46 84.66 0.46 1.17 16 7 N -0.92 -56.75 13.29 21.45 0.28 -56.47 16 8 Si 0.97 45.85 29.54 68.60 2.03 47.88 16 9 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 10 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 11 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 12 C 0.57 28.11 7.70 86.93 0.67 28.78 16 13 O -0.57 -31.46 15.12 -3.70 -0.06 -31.51 16 14 C -0.04 -1.59 6.87 42.69 0.29 -1.29 16 15 N -0.34 -11.51 8.75 -49.02 -0.43 -11.93 16 16 O 0.13 3.48 11.19 74.91 0.84 4.32 16 17 C -0.02 -0.36 6.64 24.91 0.17 -0.20 16 18 C -0.17 -5.10 5.73 -20.02 -0.11 -5.22 16 19 C -0.05 -1.29 5.34 29.77 0.16 -1.13 16 20 C -0.12 -2.11 5.55 30.56 0.17 -1.94 16 21 C -0.12 -1.36 5.63 30.32 0.17 -1.19 16 22 C -0.11 -1.18 5.63 30.54 0.17 -1.01 16 23 C -0.03 -0.39 5.55 29.89 0.17 -0.23 16 24 H 0.06 2.24 8.14 -2.39 -0.02 2.23 16 25 H 0.08 2.91 8.03 -2.39 -0.02 2.90 16 26 H 0.09 3.21 5.40 -2.39 -0.01 3.20 16 27 H 0.03 1.75 8.07 -2.39 -0.02 1.73 16 28 H 0.01 0.48 7.38 -2.39 -0.02 0.47 16 29 H 0.27 15.38 8.31 -92.71 -0.77 14.60 16 30 H 0.05 1.92 7.17 -2.39 -0.02 1.90 16 31 H 0.08 2.15 7.84 -2.38 -0.02 2.13 16 32 H 0.07 1.23 5.69 -2.39 -0.01 1.22 16 33 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.06 0.80 8.09 -2.39 -0.02 0.78 16 35 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 36 H 0.05 0.75 7.79 -2.39 -0.02 0.73 16 37 H 0.11 0.51 8.14 -2.39 -0.02 0.49 16 38 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.12 0.99 6.38 -2.39 -0.02 0.98 16 Total: -1.00 -76.29 314.99 5.51 -70.78 By element: Atomic # 1 Polarization: 2.95 SS G_CDS: 1.06 Total: 4.01 kcal Atomic # 6 Polarization: 0.33 SS G_CDS: 4.23 Total: 4.55 kcal Atomic # 7 Polarization: -97.44 SS G_CDS: -2.58 Total: -100.02 kcal Atomic # 8 Polarization: -27.98 SS G_CDS: 0.78 Total: -27.20 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 2.03 Total: 47.88 kcal Total: -76.29 5.51 -70.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129672336.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.027 kcal (2) G-P(sol) polarization free energy of solvation -76.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.780 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds