Wall clock time and date at job start Tue Mar 31 2020 01:16:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42905 * 109.46850 * 2 1 4 4 N 1.41600 * 113.99665 * 179.97438 * 3 2 1 5 5 C 1.34784 * 119.99804 * 179.97438 * 4 3 2 6 6 O 1.21588 * 119.99858 * 359.72619 * 5 4 3 7 7 N 1.34777 * 119.99964 * 179.72694 * 5 4 3 8 8 C 1.46496 * 119.99614 * 180.02562 * 7 5 4 9 9 H 1.08999 * 109.47513 * 34.99437 * 8 7 5 10 10 C 1.53005 * 109.46999 * 154.99671 * 8 7 5 11 11 C 1.50695 * 109.46978 * 294.99563 * 10 8 7 12 12 H 1.08001 * 120.00091 * 0.02562 * 11 10 8 13 13 C 1.37875 * 119.99897 * 179.97438 * 11 10 8 14 14 N 1.31515 * 120.00152 * 0.02562 * 13 11 10 15 15 Si 1.86808 * 120.00214 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.46864 * 90.00167 * 15 13 11 17 17 H 1.48503 * 109.47159 * 210.00312 * 15 13 11 18 18 H 1.48498 * 109.46948 * 330.00090 * 15 13 11 19 19 C 1.50698 * 109.47133 * 274.99546 * 8 7 5 20 20 C 1.38236 * 119.99733 * 319.73012 * 19 8 7 21 21 C 1.38236 * 119.99905 * 179.78750 * 20 19 8 22 22 C 1.38235 * 120.00221 * 0.44254 * 21 20 19 23 23 C 1.38245 * 119.99811 * 359.81002 * 22 21 20 24 24 C 1.38231 * 120.00269 * 140.00231 * 19 8 7 25 25 H 1.09004 * 109.46715 * 60.00824 * 1 2 3 26 26 H 1.09005 * 109.46518 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47546 * 300.00305 * 1 2 3 28 28 H 1.09001 * 109.47546 * 239.99695 * 2 1 3 29 29 H 1.09004 * 109.46715 * 119.99176 * 2 1 3 30 30 H 0.97000 * 120.00799 * 359.71975 * 4 3 2 31 31 H 0.96996 * 119.99887 * 359.97438 * 7 5 4 32 32 H 1.09001 * 109.47071 * 54.99707 * 10 8 7 33 33 H 1.09000 * 109.46960 * 174.99671 * 10 8 7 34 34 H 0.97001 * 120.00571 * 179.97438 * 14 13 11 35 35 H 1.08004 * 120.00443 * 359.97438 * 20 19 8 36 36 H 1.08002 * 120.00624 * 180.27464 * 21 20 19 37 37 H 1.07994 * 120.00724 * 179.83443 * 22 21 20 38 38 H 1.07994 * 119.99799 * 179.97438 * 23 22 21 39 39 H 1.08004 * 119.99949 * 359.97438 * 24 19 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 7 3.4179 1.4591 0.0006 5 6 3.9975 2.6760 0.0001 6 8 3.3083 3.6776 -0.0058 7 7 5.3410 2.7824 0.0062 8 6 5.9709 4.1051 0.0063 9 1 5.3644 4.7964 0.5913 10 6 7.3677 4.0047 0.6229 11 6 7.2492 3.6195 2.0749 12 1 6.2752 3.4617 2.5140 13 6 8.3844 3.4676 2.8426 14 7 9.5705 3.6594 2.3078 15 14 8.2377 2.9895 4.6425 16 1 8.2577 1.5096 4.7647 17 1 9.3771 3.5644 5.4019 18 1 6.9617 3.5144 5.1917 19 6 6.0819 4.6087 -1.4097 20 6 6.4363 3.7412 -2.4260 21 6 6.5339 4.2022 -3.7256 22 6 6.2859 5.5325 -4.0075 23 6 5.9366 6.4012 -2.9904 24 6 5.8348 5.9392 -1.6915 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5137 0.8901 30 1 3.9678 0.6601 0.0050 31 1 5.8908 1.9833 0.0113 32 1 7.9456 3.2480 0.0922 33 1 7.8704 4.9685 0.5424 34 1 10.3691 3.5529 2.8480 35 1 6.6341 2.7026 -2.2052 36 1 6.8064 3.5235 -4.5203 37 1 6.3647 5.8933 -5.0224 38 1 5.7433 7.4406 -3.2106 39 1 5.5618 6.6178 -0.8968 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000131379110.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:16:05 Heat of formation + Delta-G solvation = -5.543658 kcal Electronic energy + Delta-G solvation = -21387.564453 eV Core-core repulsion = 18104.279810 eV Total energy + Delta-G solvation = -3283.284644 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.68348 -38.57894 -37.29941 -35.06794 -32.99014 -32.56603 -31.16837 -30.44002 -29.59590 -28.53565 -24.83858 -23.14102 -22.26775 -21.93873 -21.12943 -19.79325 -18.26890 -17.73915 -16.69135 -16.12683 -15.97015 -15.27994 -14.86603 -14.57410 -14.38561 -14.28239 -13.66130 -13.37695 -13.01284 -12.87631 -12.82030 -12.53509 -12.42141 -12.08493 -11.80008 -11.52109 -11.12459 -10.93095 -10.83106 -10.71001 -10.58246 -10.42884 -9.76938 -9.69168 -9.28911 -8.75322 -8.50010 -8.44375 -8.31534 -8.14096 -6.08592 -4.11757 1.75175 1.85455 1.98164 3.26804 3.34742 3.39574 3.71454 4.16516 4.36812 4.41692 4.70038 4.76428 4.90774 5.07629 5.28178 5.30534 5.31816 5.41495 5.49409 5.58302 5.61103 5.85043 5.95249 5.98523 6.15578 6.39013 6.45674 6.60752 6.88311 6.89910 6.91341 6.99951 7.12175 7.24677 7.45362 7.51720 7.67812 7.88709 8.26545 8.45238 8.94478 9.11388 9.53282 11.01893 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.009180 B = 0.006811 C = 0.004206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3049.219070 B = 4109.901148 C = 6656.009616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.027 3.973 3 O -0.133 6.133 4 N -0.621 5.621 5 C 0.720 3.280 6 O -0.579 6.579 7 N -0.708 5.708 8 C 0.206 3.794 9 H 0.089 0.911 10 C 0.023 3.977 11 C -0.520 4.520 12 H 0.059 0.941 13 C 0.061 3.939 14 N -0.892 5.892 15 Si 0.891 3.109 16 H -0.282 1.282 17 H -0.286 1.286 18 H -0.273 1.273 19 C -0.073 4.073 20 C -0.106 4.106 21 C -0.126 4.126 22 C -0.135 4.135 23 C -0.123 4.123 24 C -0.106 4.106 25 H 0.067 0.933 26 H 0.078 0.922 27 H 0.068 0.932 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.401 0.599 31 H 0.397 0.603 32 H 0.025 0.975 33 H 0.038 0.962 34 H 0.261 0.739 35 H 0.116 0.884 36 H 0.114 0.886 37 H 0.113 0.887 38 H 0.116 0.884 39 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.716 -6.239 -9.125 14.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.051 4.051 3 O -0.136 6.136 4 N -0.327 5.327 5 C 0.420 3.580 6 O -0.455 6.455 7 N -0.365 5.365 8 C 0.101 3.899 9 H 0.107 0.893 10 C -0.014 4.014 11 C -0.558 4.558 12 H 0.077 0.923 13 C -0.141 4.141 14 N -0.531 5.531 15 Si 0.719 3.281 16 H -0.208 1.208 17 H -0.212 1.212 18 H -0.198 1.198 19 C -0.074 4.074 20 C -0.125 4.125 21 C -0.144 4.144 22 C -0.153 4.153 23 C -0.141 4.141 24 C -0.125 4.125 25 H 0.086 0.914 26 H 0.097 0.903 27 H 0.087 0.913 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.240 0.760 31 H 0.232 0.768 32 H 0.044 0.956 33 H 0.056 0.944 34 H 0.071 0.929 35 H 0.134 0.866 36 H 0.132 0.868 37 H 0.131 0.869 38 H 0.134 0.866 39 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -10.320 -5.129 -9.071 14.666 hybrid contribution 0.533 -1.437 1.011 1.836 sum -9.787 -6.566 -8.060 14.278 Atomic orbital electron populations 1.21678 0.92060 1.02803 1.03769 1.22956 0.96345 0.84646 1.01127 1.90562 1.00754 1.24777 1.97492 1.46234 0.94670 1.07736 1.84021 1.15479 0.82646 0.81792 0.78059 1.90898 1.62268 1.34967 1.57349 1.44984 1.02624 1.10275 1.78571 1.20182 0.97533 0.81880 0.90258 0.89314 1.19418 0.87783 0.98728 0.95464 1.21153 0.92760 1.47129 0.94737 0.92292 1.24981 0.95351 0.95387 0.98398 1.69957 0.97483 1.49325 1.36357 0.86603 0.77765 0.78528 0.85174 1.20771 1.21228 1.19830 1.20588 0.96313 0.93806 0.96687 1.20886 0.99590 0.99560 0.92431 1.21028 1.01195 0.95726 0.96474 1.20990 1.01715 0.93940 0.98669 1.21041 1.00703 0.99263 0.93105 1.21025 0.99471 0.95460 0.96540 0.91416 0.90333 0.91337 0.92336 0.92207 0.76013 0.76848 0.95634 0.94428 0.92884 0.86630 0.86816 0.86893 0.86610 0.86094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.20 10.28 37.16 0.38 -0.82 16 2 C 0.03 0.27 6.95 37.16 0.26 0.53 16 3 O -0.13 -2.08 11.11 -29.62 -0.33 -2.41 16 4 N -0.62 -9.64 6.39 27.64 0.18 -9.46 16 5 C 0.72 14.01 8.67 -86.91 -0.75 13.25 16 6 O -0.58 -13.81 16.41 -12.86 -0.21 -14.02 16 7 N -0.71 -12.98 4.05 -59.81 -0.24 -13.22 16 8 C 0.21 4.24 2.11 -69.08 -0.15 4.09 16 9 H 0.09 2.02 7.44 -51.93 -0.39 1.63 16 10 C 0.02 0.56 4.49 -27.88 -0.13 0.43 16 11 C -0.52 -13.65 8.84 -34.44 -0.30 -13.96 16 12 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 13 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 14 N -0.89 -25.37 13.29 55.43 0.74 -24.63 16 15 Si 0.89 20.96 29.54 -169.99 -5.02 15.94 16 16 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 17 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 18 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 19 C -0.07 -1.37 4.91 -104.63 -0.51 -1.88 16 20 C -0.11 -1.81 9.32 -39.58 -0.37 -2.18 16 21 C -0.13 -1.90 10.05 -39.58 -0.40 -2.30 16 22 C -0.13 -1.96 10.05 -39.58 -0.40 -2.36 16 23 C -0.12 -1.90 10.05 -39.58 -0.40 -2.30 16 24 C -0.11 -1.90 9.67 -39.58 -0.38 -2.28 16 25 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.40 4.63 8.56 -40.82 -0.35 4.28 16 31 H 0.40 6.40 8.62 -40.82 -0.35 6.04 16 32 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.26 7.08 8.31 -40.82 -0.34 6.75 16 35 H 0.12 1.81 7.73 -52.48 -0.41 1.40 16 36 H 0.11 1.41 8.06 -52.49 -0.42 0.98 16 37 H 0.11 1.32 8.06 -52.49 -0.42 0.90 16 38 H 0.12 1.48 8.06 -52.49 -0.42 1.05 16 39 H 0.12 2.06 8.04 -52.48 -0.42 1.64 16 LS Contribution 340.55 15.07 5.13 5.13 Total: -1.00 -33.54 340.55 -8.69 -42.22 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: -5.68 Total: 8.67 kcal Atomic # 6 Polarization: -4.98 SS G_CDS: -3.24 Total: -8.23 kcal Atomic # 7 Polarization: -47.99 SS G_CDS: 0.67 Total: -47.32 kcal Atomic # 8 Polarization: -15.88 SS G_CDS: -0.54 Total: -16.42 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -33.54 -8.69 -42.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131379110.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.679 kcal (2) G-P(sol) polarization free energy of solvation -33.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds