Wall clock time and date at job start Tue Mar 31 2020 01:16:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42905 * 109.46850 * 2 1 4 4 N 1.41600 * 113.99665 * 179.97438 * 3 2 1 5 5 C 1.34784 * 119.99804 * 179.97438 * 4 3 2 6 6 O 1.21588 * 119.99858 * 359.72619 * 5 4 3 7 7 N 1.34777 * 119.99964 * 179.72694 * 5 4 3 8 8 C 1.46496 * 119.99614 * 180.02562 * 7 5 4 9 9 H 1.08999 * 109.47513 * 34.99437 * 8 7 5 10 10 C 1.53005 * 109.46999 * 154.99671 * 8 7 5 11 11 C 1.50695 * 109.46978 * 294.99563 * 10 8 7 12 12 H 1.08001 * 120.00091 * 0.02562 * 11 10 8 13 13 C 1.37875 * 119.99897 * 179.97438 * 11 10 8 14 14 N 1.31515 * 120.00152 * 0.02562 * 13 11 10 15 15 Si 1.86808 * 120.00214 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.46864 * 90.00167 * 15 13 11 17 17 H 1.48503 * 109.47159 * 210.00312 * 15 13 11 18 18 H 1.48498 * 109.46948 * 330.00090 * 15 13 11 19 19 C 1.50698 * 109.47133 * 274.99546 * 8 7 5 20 20 C 1.38236 * 119.99733 * 319.73012 * 19 8 7 21 21 C 1.38236 * 119.99905 * 179.78750 * 20 19 8 22 22 C 1.38235 * 120.00221 * 0.44254 * 21 20 19 23 23 C 1.38245 * 119.99811 * 359.81002 * 22 21 20 24 24 C 1.38231 * 120.00269 * 140.00231 * 19 8 7 25 25 H 1.09004 * 109.46715 * 60.00824 * 1 2 3 26 26 H 1.09005 * 109.46518 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47546 * 300.00305 * 1 2 3 28 28 H 1.09001 * 109.47546 * 239.99695 * 2 1 3 29 29 H 1.09004 * 109.46715 * 119.99176 * 2 1 3 30 30 H 0.97000 * 120.00799 * 359.71975 * 4 3 2 31 31 H 0.96996 * 119.99887 * 359.97438 * 7 5 4 32 32 H 1.09001 * 109.47071 * 54.99707 * 10 8 7 33 33 H 1.09000 * 109.46960 * 174.99671 * 10 8 7 34 34 H 0.97001 * 120.00571 * 179.97438 * 14 13 11 35 35 H 1.08004 * 120.00443 * 359.97438 * 20 19 8 36 36 H 1.08002 * 120.00624 * 180.27464 * 21 20 19 37 37 H 1.07994 * 120.00724 * 179.83443 * 22 21 20 38 38 H 1.07994 * 119.99799 * 179.97438 * 23 22 21 39 39 H 1.08004 * 119.99949 * 359.97438 * 24 19 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 7 3.4179 1.4591 0.0006 5 6 3.9975 2.6760 0.0001 6 8 3.3083 3.6776 -0.0058 7 7 5.3410 2.7824 0.0062 8 6 5.9709 4.1051 0.0063 9 1 5.3644 4.7964 0.5913 10 6 7.3677 4.0047 0.6229 11 6 7.2492 3.6195 2.0749 12 1 6.2752 3.4617 2.5140 13 6 8.3844 3.4676 2.8426 14 7 9.5705 3.6594 2.3078 15 14 8.2377 2.9895 4.6425 16 1 8.2577 1.5096 4.7647 17 1 9.3771 3.5644 5.4019 18 1 6.9617 3.5144 5.1917 19 6 6.0819 4.6087 -1.4097 20 6 6.4363 3.7412 -2.4260 21 6 6.5339 4.2022 -3.7256 22 6 6.2859 5.5325 -4.0075 23 6 5.9366 6.4012 -2.9904 24 6 5.8348 5.9392 -1.6915 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5137 0.8901 30 1 3.9678 0.6601 0.0050 31 1 5.8908 1.9833 0.0113 32 1 7.9456 3.2480 0.0922 33 1 7.8704 4.9685 0.5424 34 1 10.3691 3.5529 2.8480 35 1 6.6341 2.7026 -2.2052 36 1 6.8064 3.5235 -4.5203 37 1 6.3647 5.8933 -5.0224 38 1 5.7433 7.4406 -3.2106 39 1 5.5618 6.6178 -0.8968 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000131379110.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:16:03 Heat of formation + Delta-G solvation = -26.348709 kcal Electronic energy + Delta-G solvation = -21388.466628 eV Core-core repulsion = 18104.279810 eV Total energy + Delta-G solvation = -3284.186818 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.17082 -39.88119 -38.48773 -36.71324 -34.77108 -34.04612 -32.38392 -31.67583 -30.80728 -30.24846 -26.62827 -23.95451 -23.77757 -23.40863 -22.57380 -21.29401 -19.58714 -19.10625 -18.51011 -17.60543 -17.01912 -16.74648 -16.49617 -16.18246 -15.71564 -15.60062 -14.99805 -14.70219 -14.45911 -14.15647 -14.12343 -13.67433 -13.55029 -13.49700 -13.37606 -12.91457 -12.61767 -12.55442 -12.45263 -12.13589 -11.85341 -11.74313 -11.57341 -11.37105 -11.30552 -10.56443 -10.23247 -9.74493 -9.69484 -9.48757 -8.18080 -6.27681 0.47490 0.59734 0.73248 1.39901 1.42849 1.52954 2.17288 2.41797 2.85268 3.07080 3.17612 3.69741 4.01231 4.05935 4.07014 4.14462 4.24213 4.35389 4.36288 4.45713 4.67610 4.77971 4.81355 4.83696 4.92070 5.15378 5.18513 5.23115 5.27811 5.44617 5.61790 5.64188 5.66417 5.67359 5.80932 5.90473 6.09698 6.19379 6.23945 6.84787 7.07155 7.41111 7.64215 8.92495 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.009180 B = 0.006811 C = 0.004206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3049.219070 B = 4109.901148 C = 6656.009616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.018 3.982 3 O -0.163 6.163 4 N -0.605 5.605 5 C 0.719 3.281 6 O -0.628 6.628 7 N -0.699 5.699 8 C 0.222 3.778 9 H 0.058 0.942 10 C 0.038 3.962 11 C -0.529 4.529 12 H 0.052 0.948 13 C 0.013 3.987 14 N -0.925 5.925 15 Si 0.954 3.046 16 H -0.269 1.269 17 H -0.284 1.284 18 H -0.275 1.275 19 C -0.100 4.100 20 C -0.120 4.120 21 C -0.126 4.126 22 C -0.130 4.130 23 C -0.125 4.125 24 C -0.133 4.133 25 H 0.061 0.939 26 H 0.110 0.890 27 H 0.058 0.942 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.421 0.579 31 H 0.409 0.591 32 H 0.018 0.982 33 H 0.009 0.991 34 H 0.264 0.736 35 H 0.123 0.877 36 H 0.147 0.853 37 H 0.151 0.849 38 H 0.143 0.857 39 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.186 -7.773 -10.329 16.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.059 4.059 3 O -0.167 6.167 4 N -0.311 5.311 5 C 0.419 3.581 6 O -0.508 6.508 7 N -0.356 5.356 8 C 0.116 3.884 9 H 0.076 0.924 10 C 0.001 3.999 11 C -0.567 4.567 12 H 0.070 0.930 13 C -0.185 4.185 14 N -0.565 5.565 15 Si 0.780 3.220 16 H -0.194 1.194 17 H -0.210 1.210 18 H -0.200 1.200 19 C -0.101 4.101 20 C -0.138 4.138 21 C -0.144 4.144 22 C -0.148 4.148 23 C -0.143 4.143 24 C -0.152 4.152 25 H 0.080 0.920 26 H 0.128 0.872 27 H 0.077 0.923 28 H 0.097 0.903 29 H 0.092 0.908 30 H 0.263 0.737 31 H 0.245 0.755 32 H 0.036 0.964 33 H 0.027 0.973 34 H 0.073 0.927 35 H 0.141 0.859 36 H 0.164 0.836 37 H 0.168 0.832 38 H 0.161 0.839 39 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -10.784 -6.737 -10.279 16.350 hybrid contribution 0.628 -0.992 1.317 1.764 sum -10.156 -7.729 -8.962 15.594 Atomic orbital electron populations 1.21744 0.90623 1.04600 1.03052 1.23350 0.97335 0.82454 1.02765 1.90561 0.99956 1.28559 1.97671 1.45860 0.95588 1.07188 1.82432 1.15540 0.82465 0.82303 0.77802 1.90857 1.63323 1.37047 1.59571 1.44719 1.02663 1.09928 1.78314 1.19658 0.94921 0.82388 0.91390 0.92427 1.19154 0.89451 0.96663 0.94660 1.21394 0.92457 1.46795 0.96022 0.92962 1.25729 0.95007 0.95365 1.02444 1.70061 0.98134 1.50345 1.37924 0.85611 0.77435 0.78765 0.80175 1.19400 1.20975 1.20007 1.20480 0.98885 0.94835 0.95920 1.21077 0.99850 0.99766 0.93083 1.21441 0.99916 0.96728 0.96266 1.21472 0.99651 0.93516 1.00121 1.21385 0.99793 1.00964 0.92127 1.21189 1.00785 0.95234 0.97944 0.91971 0.87184 0.92255 0.90337 0.90814 0.73658 0.75528 0.96412 0.97302 0.92721 0.85862 0.83551 0.83155 0.83909 0.86924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 10.28 71.98 0.74 -1.34 16 2 C 0.02 0.32 6.95 71.98 0.50 0.82 16 3 O -0.16 -5.01 11.11 -21.43 -0.24 -5.25 16 4 N -0.60 -18.42 6.39 -184.74 -1.18 -19.60 16 5 C 0.72 28.46 8.67 179.05 1.55 30.02 16 6 O -0.63 -31.03 16.41 13.36 0.22 -30.81 16 7 N -0.70 -26.26 4.05 -461.41 -1.87 -28.13 16 8 C 0.22 9.58 2.11 44.25 0.09 9.68 16 9 H 0.06 2.82 7.44 -2.39 -0.02 2.80 16 10 C 0.04 1.90 4.49 29.85 0.13 2.03 16 11 C -0.53 -28.51 8.84 25.60 0.23 -28.28 16 12 H 0.05 2.84 7.74 -2.91 -0.02 2.82 16 13 C 0.01 0.73 5.46 84.65 0.46 1.19 16 14 N -0.92 -53.32 13.29 21.45 0.28 -53.04 16 15 Si 0.95 43.19 29.54 68.60 2.03 45.22 16 16 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 17 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 18 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 19 C -0.10 -3.88 4.91 -19.87 -0.10 -3.98 16 20 C -0.12 -4.00 9.32 22.27 0.21 -3.80 16 21 C -0.13 -3.48 10.05 22.27 0.22 -3.26 16 22 C -0.13 -3.40 10.05 22.27 0.22 -3.17 16 23 C -0.12 -3.69 10.05 22.27 0.22 -3.46 16 24 C -0.13 -4.87 9.67 22.27 0.22 -4.66 16 25 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.11 0.93 8.14 -2.38 -0.02 0.91 16 27 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.42 9.12 8.56 -92.71 -0.79 8.32 16 31 H 0.41 13.24 8.62 -92.71 -0.80 12.44 16 32 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 34 H 0.26 14.41 8.31 -92.71 -0.77 13.63 16 35 H 0.12 3.79 7.73 -2.91 -0.02 3.76 16 36 H 0.15 3.05 8.06 -2.91 -0.02 3.03 16 37 H 0.15 2.81 8.06 -2.91 -0.02 2.79 16 38 H 0.14 3.34 8.06 -2.91 -0.02 3.31 16 39 H 0.11 4.13 8.04 -2.91 -0.02 4.11 16 Total: -1.00 -74.37 340.55 3.41 -70.96 By element: Atomic # 1 Polarization: 29.40 SS G_CDS: -0.53 Total: 28.87 kcal Atomic # 6 Polarization: -12.92 SS G_CDS: 4.70 Total: -8.22 kcal Atomic # 7 Polarization: -98.00 SS G_CDS: -2.76 Total: -100.77 kcal Atomic # 8 Polarization: -36.04 SS G_CDS: -0.02 Total: -36.06 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Total: -74.37 3.41 -70.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131379110.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.608 kcal (2) G-P(sol) polarization free energy of solvation -74.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds