Wall clock time and date at job start Tue Mar 31 2020 01:16:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42905 * 109.47449 * 2 1 4 4 N 1.41598 * 113.99924 * 180.02562 * 3 2 1 5 5 C 1.34775 * 119.99669 * 180.02562 * 4 3 2 6 6 O 1.21596 * 120.00015 * 359.97438 * 5 4 3 7 7 N 1.34771 * 120.00181 * 179.97438 * 5 4 3 8 8 C 1.46500 * 120.00556 * 179.97438 * 7 5 4 9 9 H 1.09009 * 109.46624 * 324.99750 * 8 7 5 10 10 C 1.52996 * 109.47466 * 205.00158 * 8 7 5 11 11 C 1.50702 * 109.47159 * 64.99479 * 10 8 7 12 12 H 1.08002 * 120.00299 * 0.02562 * 11 10 8 13 13 C 1.37884 * 119.99942 * 179.72211 * 11 10 8 14 14 N 1.31514 * 119.99985 * 180.27663 * 13 11 10 15 15 Si 1.86800 * 119.99777 * 0.28166 * 13 11 10 16 16 H 1.48498 * 109.47109 * 89.99834 * 15 13 11 17 17 H 1.48507 * 109.46754 * 209.99574 * 15 13 11 18 18 H 1.48498 * 109.47278 * 329.99405 * 15 13 11 19 19 C 1.50700 * 109.47471 * 84.99708 * 8 7 5 20 20 C 1.38233 * 119.99377 * 39.72808 * 19 8 7 21 21 C 1.38237 * 119.99600 * 179.78842 * 20 19 8 22 22 C 1.38241 * 119.99990 * 0.44354 * 21 20 19 23 23 C 1.38237 * 119.99716 * 359.81238 * 22 21 20 24 24 C 1.38228 * 120.00326 * 220.00479 * 19 8 7 25 25 H 1.08998 * 109.47006 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47142 * 300.00333 * 1 2 3 27 27 H 1.09004 * 109.46714 * 60.00039 * 1 2 3 28 28 H 1.09005 * 109.47142 * 239.99667 * 2 1 3 29 29 H 1.09010 * 109.47116 * 119.99779 * 2 1 3 30 30 H 0.96998 * 120.00093 * 359.97438 * 4 3 2 31 31 H 0.97002 * 120.00072 * 359.97438 * 7 5 4 32 32 H 1.09004 * 109.47066 * 304.99682 * 10 8 7 33 33 H 1.08994 * 109.47405 * 184.99512 * 10 8 7 34 34 H 0.96996 * 119.99730 * 180.02562 * 14 13 11 35 35 H 1.07995 * 120.00514 * 359.97438 * 20 19 8 36 36 H 1.08001 * 120.00058 * 180.28006 * 21 20 19 37 37 H 1.07995 * 120.00194 * 179.83256 * 22 21 20 38 38 H 1.08001 * 119.99824 * 180.02562 * 23 22 21 39 39 H 1.08005 * 119.99906 * 359.97438 * 24 19 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 7 3.4180 1.4590 -0.0006 5 6 3.9976 2.6757 -0.0001 6 8 3.3084 3.6775 0.0003 7 7 5.3411 2.7822 -0.0001 8 6 5.9713 4.1047 -0.0002 9 1 5.3675 4.7948 -0.5898 10 6 7.3708 4.0029 -0.6099 11 6 7.2593 3.6143 -2.0616 12 1 6.2874 3.4562 -2.5053 13 6 8.3979 3.4666 -2.8252 14 7 8.3003 3.1328 -4.0935 15 14 10.0789 3.7407 -2.0581 16 1 10.5846 2.4595 -1.5032 17 1 11.0204 4.2376 -3.0936 18 1 9.9681 4.7429 -0.9680 19 6 6.0755 4.6117 1.4151 20 6 6.4140 3.7441 2.4367 21 6 6.5139 4.2100 3.7344 22 6 6.2664 5.5415 4.0118 23 6 5.9228 6.4078 2.9908 24 6 5.8272 5.9428 1.6926 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5138 0.8901 30 1 3.9677 0.6599 -0.0006 31 1 5.8910 1.9831 -0.0001 32 1 7.9462 3.2474 -0.0747 33 1 7.8732 4.9668 -0.5294 34 1 9.1013 3.0286 -4.6306 35 1 6.6032 2.7030 2.2207 36 1 6.7827 3.5331 4.5319 37 1 6.3419 5.9049 5.0259 38 1 5.7299 7.4482 3.2075 39 1 5.5588 6.6198 0.8950 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000131379304.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:16:09 Heat of formation + Delta-G solvation = -1.344100 kcal Electronic energy + Delta-G solvation = -21427.050365 eV Core-core repulsion = 18143.947827 eV Total energy + Delta-G solvation = -3283.102537 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -39.74508 -38.64699 -37.30536 -35.16049 -32.97566 -32.52330 -31.24813 -30.54310 -29.66619 -29.04700 -24.94868 -23.12006 -22.32782 -21.75378 -21.10812 -19.83982 -18.27515 -17.73197 -17.05883 -16.32613 -15.95515 -15.35121 -14.95681 -14.47872 -14.32842 -14.30870 -13.71231 -13.39925 -13.10030 -13.00924 -12.83571 -12.58773 -12.48437 -12.35514 -11.94465 -11.74558 -11.26951 -11.08521 -10.81871 -10.73230 -10.49619 -10.22912 -9.87548 -9.70741 -9.33048 -8.76184 -8.63068 -8.57596 -8.38345 -8.25966 -6.10932 -4.10748 1.66693 1.74524 1.94997 3.24526 3.34272 3.37359 3.70451 4.08243 4.32271 4.38047 4.69593 4.78789 4.92244 5.10007 5.20356 5.21574 5.23088 5.30488 5.47069 5.51528 5.63484 5.84528 5.86321 5.87440 6.01708 6.25270 6.33182 6.44409 6.75930 6.79241 6.81328 6.92262 6.95016 7.09554 7.18031 7.34040 7.43435 7.65105 8.40572 8.45354 8.95925 9.09810 9.49718 11.01853 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.010759 B = 0.006301 C = 0.004307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2601.817371 B = 4442.514647 C = 6498.930619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.027 3.973 3 O -0.132 6.132 4 N -0.620 5.620 5 C 0.722 3.278 6 O -0.578 6.578 7 N -0.708 5.708 8 C 0.216 3.784 9 H 0.094 0.906 10 C -0.014 4.014 11 C -0.520 4.520 12 H 0.077 0.923 13 C 0.071 3.929 14 N -0.898 5.898 15 Si 0.875 3.125 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.264 1.264 19 C -0.078 4.078 20 C -0.108 4.108 21 C -0.126 4.126 22 C -0.133 4.133 23 C -0.122 4.122 24 C -0.105 4.105 25 H 0.078 0.922 26 H 0.066 0.934 27 H 0.068 0.932 28 H 0.061 0.939 29 H 0.058 0.942 30 H 0.401 0.599 31 H 0.398 0.602 32 H 0.020 0.980 33 H 0.037 0.963 34 H 0.264 0.736 35 H 0.116 0.884 36 H 0.115 0.885 37 H 0.114 0.886 38 H 0.117 0.883 39 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.066 -4.954 13.433 15.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.051 4.051 3 O -0.135 6.135 4 N -0.325 5.325 5 C 0.423 3.577 6 O -0.454 6.454 7 N -0.365 5.365 8 C 0.112 3.888 9 H 0.112 0.888 10 C -0.052 4.052 11 C -0.558 4.558 12 H 0.095 0.905 13 C -0.131 4.131 14 N -0.537 5.537 15 Si 0.702 3.298 16 H -0.203 1.203 17 H -0.213 1.213 18 H -0.189 1.189 19 C -0.079 4.079 20 C -0.126 4.126 21 C -0.144 4.144 22 C -0.152 4.152 23 C -0.141 4.141 24 C -0.124 4.124 25 H 0.097 0.903 26 H 0.085 0.915 27 H 0.087 0.913 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.240 0.760 31 H 0.232 0.768 32 H 0.038 0.962 33 H 0.055 0.945 34 H 0.073 0.927 35 H 0.134 0.866 36 H 0.133 0.867 37 H 0.132 0.868 38 H 0.135 0.865 39 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -7.759 -3.885 13.244 15.834 hybrid contribution 1.437 -1.084 0.236 1.815 sum -6.321 -4.968 13.481 15.696 Atomic orbital electron populations 1.21677 0.92042 1.02811 1.03773 1.22962 0.96352 0.84614 1.01157 1.90562 1.00646 1.24829 1.97493 1.46181 0.94742 1.07696 1.83889 1.15407 0.82519 0.81843 0.77963 1.90903 1.62231 1.34973 1.57274 1.44876 1.02811 1.10006 1.78806 1.19886 0.96420 0.82389 0.90140 0.88758 1.19897 0.90172 0.97979 0.97103 1.21037 0.95143 1.47217 0.92438 0.90512 1.24990 0.98982 0.94506 0.94637 1.69908 1.29243 1.47865 1.06634 0.86857 0.84458 0.79055 0.79411 1.20318 1.21345 1.18860 1.20612 0.96726 0.93885 0.96681 1.20905 0.99763 0.99516 0.92449 1.21044 1.01163 0.95725 0.96491 1.21014 1.01492 0.93937 0.98709 1.21061 1.00586 0.99363 0.93049 1.21047 0.99248 0.95432 0.96667 0.90322 0.91453 0.91290 0.92107 0.92378 0.75971 0.76835 0.96217 0.94505 0.92653 0.86557 0.86734 0.86801 0.86494 0.85919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 10.28 37.16 0.38 -0.84 16 2 C 0.03 0.28 6.95 37.16 0.26 0.54 16 3 O -0.13 -2.10 11.11 -29.62 -0.33 -2.43 16 4 N -0.62 -9.74 6.39 27.63 0.18 -9.56 16 5 C 0.72 14.09 8.67 -86.92 -0.75 13.34 16 6 O -0.58 -13.80 16.41 -12.87 -0.21 -14.01 16 7 N -0.71 -12.82 4.02 -59.81 -0.24 -13.06 16 8 C 0.22 4.30 2.12 -69.08 -0.15 4.16 16 9 H 0.09 2.11 7.44 -51.92 -0.39 1.72 16 10 C -0.01 -0.30 3.56 -27.88 -0.10 -0.40 16 11 C -0.52 -13.83 9.39 -34.44 -0.32 -14.16 16 12 H 0.08 2.27 7.99 -52.49 -0.42 1.85 16 13 C 0.07 1.95 5.47 -17.82 -0.10 1.86 16 14 N -0.90 -26.66 13.96 55.43 0.77 -25.89 16 15 Si 0.87 20.62 27.47 -169.99 -4.67 15.95 16 16 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 17 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 18 H -0.26 -6.01 6.54 56.52 0.37 -5.64 16 19 C -0.08 -1.39 4.91 -104.63 -0.51 -1.91 16 20 C -0.11 -1.72 9.33 -39.58 -0.37 -2.09 16 21 C -0.13 -1.78 10.05 -39.58 -0.40 -2.18 16 22 C -0.13 -1.82 10.05 -39.58 -0.40 -2.22 16 23 C -0.12 -1.78 10.05 -39.59 -0.40 -2.18 16 24 C -0.11 -1.78 9.67 -39.59 -0.38 -2.16 16 25 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.50 8.14 -51.92 -0.42 0.08 16 30 H 0.40 4.72 8.56 -40.82 -0.35 4.37 16 31 H 0.40 6.25 8.62 -40.82 -0.35 5.90 16 32 H 0.02 0.41 7.58 -51.93 -0.39 0.02 16 33 H 0.04 0.83 7.19 -51.93 -0.37 0.46 16 34 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 35 H 0.12 1.68 7.71 -52.49 -0.40 1.28 16 36 H 0.11 1.31 8.06 -52.49 -0.42 0.89 16 37 H 0.11 1.24 8.06 -52.49 -0.42 0.82 16 38 H 0.12 1.40 8.06 -52.49 -0.42 0.97 16 39 H 0.12 1.98 8.04 -52.48 -0.42 1.56 16 LS Contribution 336.91 15.07 5.08 5.08 Total: -1.00 -34.43 336.91 -8.31 -42.74 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: -5.65 Total: 9.43 kcal Atomic # 6 Polarization: -5.02 SS G_CDS: -3.24 Total: -8.25 kcal Atomic # 7 Polarization: -49.22 SS G_CDS: 0.71 Total: -48.51 kcal Atomic # 8 Polarization: -15.90 SS G_CDS: -0.54 Total: -16.44 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -4.67 Total: 15.95 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -34.43 -8.31 -42.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131379304.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.400 kcal (2) G-P(sol) polarization free energy of solvation -34.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds