Wall clock time and date at job start Tue Mar 31 2020 01:16:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42905 * 109.47449 * 2 1 4 4 N 1.41598 * 113.99924 * 180.02562 * 3 2 1 5 5 C 1.34775 * 119.99669 * 180.02562 * 4 3 2 6 6 O 1.21596 * 120.00015 * 359.97438 * 5 4 3 7 7 N 1.34771 * 120.00181 * 179.97438 * 5 4 3 8 8 C 1.46500 * 120.00556 * 179.97438 * 7 5 4 9 9 H 1.09009 * 109.46624 * 324.99750 * 8 7 5 10 10 C 1.52996 * 109.47466 * 205.00158 * 8 7 5 11 11 C 1.50702 * 109.47159 * 64.99479 * 10 8 7 12 12 H 1.08002 * 120.00299 * 0.02562 * 11 10 8 13 13 C 1.37884 * 119.99942 * 179.72211 * 11 10 8 14 14 N 1.31514 * 119.99985 * 180.27663 * 13 11 10 15 15 Si 1.86800 * 119.99777 * 0.28166 * 13 11 10 16 16 H 1.48498 * 109.47109 * 89.99834 * 15 13 11 17 17 H 1.48507 * 109.46754 * 209.99574 * 15 13 11 18 18 H 1.48498 * 109.47278 * 329.99405 * 15 13 11 19 19 C 1.50700 * 109.47471 * 84.99708 * 8 7 5 20 20 C 1.38233 * 119.99377 * 39.72808 * 19 8 7 21 21 C 1.38237 * 119.99600 * 179.78842 * 20 19 8 22 22 C 1.38241 * 119.99990 * 0.44354 * 21 20 19 23 23 C 1.38237 * 119.99716 * 359.81238 * 22 21 20 24 24 C 1.38228 * 120.00326 * 220.00479 * 19 8 7 25 25 H 1.08998 * 109.47006 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47142 * 300.00333 * 1 2 3 27 27 H 1.09004 * 109.46714 * 60.00039 * 1 2 3 28 28 H 1.09005 * 109.47142 * 239.99667 * 2 1 3 29 29 H 1.09010 * 109.47116 * 119.99779 * 2 1 3 30 30 H 0.96998 * 120.00093 * 359.97438 * 4 3 2 31 31 H 0.97002 * 120.00072 * 359.97438 * 7 5 4 32 32 H 1.09004 * 109.47066 * 304.99682 * 10 8 7 33 33 H 1.08994 * 109.47405 * 184.99512 * 10 8 7 34 34 H 0.96996 * 119.99730 * 180.02562 * 14 13 11 35 35 H 1.07995 * 120.00514 * 359.97438 * 20 19 8 36 36 H 1.08001 * 120.00058 * 180.28006 * 21 20 19 37 37 H 1.07995 * 120.00194 * 179.83256 * 22 21 20 38 38 H 1.08001 * 119.99824 * 180.02562 * 23 22 21 39 39 H 1.08005 * 119.99906 * 359.97438 * 24 19 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 7 3.4180 1.4590 -0.0006 5 6 3.9976 2.6757 -0.0001 6 8 3.3084 3.6775 0.0003 7 7 5.3411 2.7822 -0.0001 8 6 5.9713 4.1047 -0.0002 9 1 5.3675 4.7948 -0.5898 10 6 7.3708 4.0029 -0.6099 11 6 7.2593 3.6143 -2.0616 12 1 6.2874 3.4562 -2.5053 13 6 8.3979 3.4666 -2.8252 14 7 8.3003 3.1328 -4.0935 15 14 10.0789 3.7407 -2.0581 16 1 10.5846 2.4595 -1.5032 17 1 11.0204 4.2376 -3.0936 18 1 9.9681 4.7429 -0.9680 19 6 6.0755 4.6117 1.4151 20 6 6.4140 3.7441 2.4367 21 6 6.5139 4.2100 3.7344 22 6 6.2664 5.5415 4.0118 23 6 5.9228 6.4078 2.9908 24 6 5.8272 5.9428 1.6926 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5138 0.8901 30 1 3.9677 0.6599 -0.0006 31 1 5.8910 1.9831 -0.0001 32 1 7.9462 3.2474 -0.0747 33 1 7.8732 4.9668 -0.5294 34 1 9.1013 3.0286 -4.6306 35 1 6.6032 2.7030 2.2207 36 1 6.7827 3.5331 4.5319 37 1 6.3419 5.9049 5.0259 38 1 5.7299 7.4482 3.2075 39 1 5.5588 6.6198 0.8950 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000131379304.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:16:08 Heat of formation + Delta-G solvation = -23.949675 kcal Electronic energy + Delta-G solvation = -21428.030616 eV Core-core repulsion = 18143.947827 eV Total energy + Delta-G solvation = -3284.082788 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.19887 -39.90014 -38.50206 -36.75338 -34.73801 -34.08463 -32.46211 -31.68435 -30.98750 -30.56872 -26.63713 -23.96308 -23.58124 -23.28845 -22.58897 -21.30877 -19.60817 -19.12162 -18.94811 -17.63048 -17.02898 -16.75832 -16.37501 -16.15813 -15.71414 -15.60911 -15.10144 -14.75707 -14.54220 -14.26778 -14.13143 -13.91461 -13.60282 -13.51095 -13.47994 -12.99806 -12.57439 -12.45050 -12.32666 -11.94609 -11.77509 -11.76671 -11.69231 -11.42035 -11.36601 -10.74236 -10.25657 -9.75943 -9.70974 -9.51147 -8.25007 -6.29995 0.45754 0.59065 0.71776 1.39268 1.43376 1.53938 2.15821 2.38969 2.82994 3.03984 3.13448 3.68465 3.94313 4.05033 4.06033 4.13558 4.23419 4.34828 4.35482 4.38551 4.60132 4.75534 4.78578 4.82771 4.91344 5.05316 5.17127 5.17829 5.21016 5.25820 5.54686 5.58480 5.64775 5.67368 5.67968 5.87328 6.06544 6.20878 6.29845 6.77458 7.05136 7.34185 7.62545 8.91426 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.010759 B = 0.006301 C = 0.004307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2601.817371 B = 4442.514647 C = 6498.930619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.017 3.983 3 O -0.164 6.164 4 N -0.605 5.605 5 C 0.718 3.282 6 O -0.628 6.628 7 N -0.700 5.700 8 C 0.226 3.774 9 H 0.055 0.945 10 C -0.004 4.004 11 C -0.519 4.519 12 H 0.030 0.970 13 C 0.011 3.989 14 N -0.949 5.949 15 Si 0.946 3.054 16 H -0.260 1.260 17 H -0.291 1.291 18 H -0.248 1.248 19 C -0.102 4.102 20 C -0.118 4.118 21 C -0.125 4.125 22 C -0.128 4.128 23 C -0.125 4.125 24 C -0.131 4.131 25 H 0.110 0.890 26 H 0.062 0.938 27 H 0.057 0.943 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.421 0.579 31 H 0.410 0.590 32 H 0.041 0.959 33 H 0.035 0.965 34 H 0.265 0.735 35 H 0.128 0.872 36 H 0.148 0.852 37 H 0.150 0.850 38 H 0.142 0.858 39 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.940 -5.959 16.716 18.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.059 4.059 3 O -0.168 6.168 4 N -0.311 5.311 5 C 0.419 3.581 6 O -0.509 6.509 7 N -0.357 5.357 8 C 0.121 3.879 9 H 0.073 0.927 10 C -0.041 4.041 11 C -0.557 4.557 12 H 0.049 0.951 13 C -0.186 4.186 14 N -0.590 5.590 15 Si 0.770 3.230 16 H -0.185 1.185 17 H -0.217 1.217 18 H -0.172 1.172 19 C -0.103 4.103 20 C -0.136 4.136 21 C -0.142 4.142 22 C -0.146 4.146 23 C -0.143 4.143 24 C -0.150 4.150 25 H 0.129 0.871 26 H 0.082 0.918 27 H 0.076 0.924 28 H 0.090 0.910 29 H 0.098 0.902 30 H 0.263 0.737 31 H 0.246 0.754 32 H 0.059 0.941 33 H 0.053 0.947 34 H 0.074 0.926 35 H 0.146 0.854 36 H 0.165 0.835 37 H 0.167 0.833 38 H 0.160 0.840 39 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -6.628 -4.956 16.548 18.502 hybrid contribution 0.943 -0.818 -0.788 1.476 sum -5.686 -5.774 15.760 17.721 Atomic orbital electron populations 1.21744 0.90571 1.04631 1.03054 1.23355 0.97381 0.82432 1.02748 1.90558 0.99970 1.28602 1.97669 1.45854 0.95602 1.07219 1.82382 1.15549 0.82561 0.82287 0.77749 1.90858 1.63365 1.37052 1.59578 1.44688 1.02674 1.09975 1.78380 1.19487 0.94380 0.82504 0.91549 0.92660 1.19750 0.91933 0.98097 0.94354 1.21209 0.93214 1.46498 0.94822 0.95124 1.25905 1.03522 0.94217 0.94924 1.70072 1.30537 1.49834 1.08539 0.85721 0.78656 0.79959 0.78681 1.18468 1.21708 1.17160 1.20415 0.99449 0.94824 0.95609 1.21108 0.99797 0.99815 0.92899 1.21450 0.99829 0.96600 0.96352 1.21482 0.99447 0.93612 1.00045 1.21377 0.99793 1.00982 0.92109 1.21189 1.00538 0.95261 0.97978 0.87131 0.91845 0.92371 0.91027 0.90151 0.73674 0.75426 0.94104 0.94689 0.92586 0.85407 0.83458 0.83259 0.84025 0.86915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 10.28 71.98 0.74 -1.46 16 2 C 0.02 0.34 6.95 71.98 0.50 0.84 16 3 O -0.16 -5.21 11.11 -21.43 -0.24 -5.45 16 4 N -0.60 -19.04 6.39 -184.74 -1.18 -20.22 16 5 C 0.72 28.93 8.67 179.06 1.55 30.48 16 6 O -0.63 -31.52 16.41 13.33 0.22 -31.30 16 7 N -0.70 -25.96 4.02 -461.40 -1.86 -27.82 16 8 C 0.23 9.32 2.12 44.24 0.09 9.41 16 9 H 0.06 2.68 7.44 -2.38 -0.02 2.66 16 10 C 0.00 -0.16 3.56 29.85 0.11 -0.05 16 11 C -0.52 -28.53 9.39 25.60 0.24 -28.29 16 12 H 0.03 1.92 7.99 -2.91 -0.02 1.89 16 13 C 0.01 0.64 5.47 84.66 0.46 1.10 16 14 N -0.95 -58.06 13.96 21.45 0.30 -57.76 16 15 Si 0.95 42.17 27.47 68.60 1.88 44.06 16 16 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 17 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 18 H -0.25 -10.34 6.54 99.48 0.65 -9.69 16 19 C -0.10 -3.63 4.91 -19.87 -0.10 -3.73 16 20 C -0.12 -3.53 9.33 22.27 0.21 -3.32 16 21 C -0.12 -3.05 10.05 22.27 0.22 -2.83 16 22 C -0.13 -3.01 10.05 22.27 0.22 -2.78 16 23 C -0.12 -3.37 10.05 22.27 0.22 -3.14 16 24 C -0.13 -4.44 9.67 22.27 0.22 -4.23 16 25 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 26 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 27 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 28 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 29 H 0.08 1.20 8.14 -2.38 -0.02 1.18 16 30 H 0.42 9.53 8.56 -92.71 -0.79 8.74 16 31 H 0.41 12.84 8.62 -92.71 -0.80 12.05 16 32 H 0.04 1.65 7.58 -2.38 -0.02 1.63 16 33 H 0.03 1.57 7.19 -2.39 -0.02 1.56 16 34 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 35 H 0.13 3.39 7.71 -2.91 -0.02 3.37 16 36 H 0.15 2.62 8.06 -2.91 -0.02 2.60 16 37 H 0.15 2.45 8.06 -2.91 -0.02 2.42 16 38 H 0.14 3.01 8.06 -2.91 -0.02 2.99 16 39 H 0.11 3.87 8.04 -2.91 -0.02 3.84 16 Total: -1.00 -78.34 336.91 3.23 -75.11 By element: Atomic # 1 Polarization: 31.97 SS G_CDS: -0.59 Total: 31.38 kcal Atomic # 6 Polarization: -12.69 SS G_CDS: 4.69 Total: -8.00 kcal Atomic # 7 Polarization: -103.06 SS G_CDS: -2.74 Total: -105.80 kcal Atomic # 8 Polarization: -36.73 SS G_CDS: -0.02 Total: -36.75 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 1.88 Total: 44.06 kcal Total: -78.34 3.23 -75.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131379304.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.157 kcal (2) G-P(sol) polarization free energy of solvation -78.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds