Wall clock time and date at job start Tue Mar 31 2020 01:40:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46899 * 110.99989 * 2 1 4 4 C 1.50700 * 109.47437 * 293.95750 * 3 2 1 5 5 H 1.07998 * 120.00136 * 0.02562 * 4 3 2 6 6 C 1.37874 * 119.99901 * 179.97438 * 4 3 2 7 7 N 1.31520 * 120.00301 * 359.97438 * 6 4 3 8 8 Si 1.86805 * 119.99911 * 180.02562 * 6 4 3 9 9 H 1.48498 * 109.47303 * 59.99828 * 8 6 4 10 10 H 1.48494 * 109.47159 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.46733 * 299.99994 * 8 6 4 12 12 C 1.46901 * 111.00418 * 123.96138 * 2 1 3 13 13 C 1.50694 * 109.46984 * 66.04179 * 12 2 1 14 14 O 1.21276 * 120.00464 * 0.02562 * 13 12 2 15 15 N 1.34779 * 119.99932 * 180.02562 * 13 12 2 16 16 O 1.41600 * 120.00395 * 179.97438 * 15 13 12 17 17 C 1.42893 * 113.99989 * 180.02562 * 16 15 13 18 18 C 1.50707 * 109.47070 * 179.97438 * 17 16 15 19 19 C 1.38238 * 119.99792 * 89.99993 * 18 17 16 20 20 C 1.38235 * 119.99712 * 179.97438 * 19 18 17 21 21 C 1.38234 * 120.00220 * 359.97124 * 20 19 18 22 22 C 1.38233 * 120.00037 * 0.28719 * 21 20 19 23 23 C 1.38234 * 120.00179 * 269.97930 * 18 17 16 24 24 H 1.09001 * 109.46737 * 296.03753 * 1 2 3 25 25 H 1.09003 * 109.47144 * 56.04079 * 1 2 3 26 26 H 1.08995 * 109.47081 * 176.04321 * 1 2 3 27 27 H 1.08996 * 109.46787 * 53.95980 * 3 2 1 28 28 H 1.09005 * 109.46825 * 173.95770 * 3 2 1 29 29 H 0.96994 * 119.99966 * 180.02562 * 7 6 4 30 30 H 1.09000 * 109.46411 * 306.04380 * 12 2 1 31 31 H 1.08993 * 109.47171 * 186.04528 * 12 2 1 32 32 H 0.97001 * 119.99823 * 0.02562 * 15 13 12 33 33 H 1.09005 * 109.47744 * 60.00324 * 17 16 15 34 34 H 1.09000 * 109.47353 * 299.99523 * 17 16 15 35 35 H 1.08005 * 120.00068 * 359.97438 * 19 18 17 36 36 H 1.07999 * 119.99770 * 179.97438 * 20 19 18 37 37 H 1.08002 * 119.99744 * 180.02562 * 21 20 19 38 38 H 1.07998 * 120.00395 * 179.72811 * 22 21 20 39 39 H 1.07999 * 119.99968 * 359.97438 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0472 -1.2984 5 1 1.0738 1.5117 -2.0484 6 6 2.0267 3.3495 -1.5283 7 7 2.7111 4.0023 -0.6143 8 14 1.5817 4.1875 -3.1375 9 1 0.1044 4.2239 -3.2846 10 1 2.1129 5.5741 -3.1369 11 1 2.1733 3.4306 -4.2698 12 6 1.9955 -0.7661 1.1375 13 6 1.6370 -2.2205 0.9726 14 8 1.0055 -2.5832 0.0029 15 7 2.0181 -3.1181 1.9029 16 8 1.6808 -4.4847 1.7483 17 6 2.1477 -5.3220 2.8079 18 6 1.7341 -6.7466 2.5419 19 6 2.5658 -7.5851 1.8234 20 6 2.1866 -8.8919 1.5799 21 6 0.9760 -9.3604 2.0552 22 6 0.1420 -8.5204 2.7690 23 6 0.5232 -7.2149 3.0166 24 1 -0.3633 0.4511 0.9234 25 1 -0.3633 0.5741 -0.8524 26 1 -0.3633 -1.0252 -0.0709 27 1 1.5612 1.9272 0.8310 28 1 3.0798 1.3443 0.1082 29 1 2.9850 4.9186 -0.7760 30 1 1.5612 -0.3874 2.0627 31 1 3.0798 -0.6612 1.1754 32 1 2.5229 -2.8280 2.6787 33 1 1.7157 -4.9889 3.7516 34 1 3.2346 -5.2636 2.8651 35 1 3.5118 -7.2191 1.4524 36 1 2.8361 -9.5469 1.0182 37 1 0.6800 -10.3815 1.8652 38 1 -0.8058 -8.8851 3.1366 39 1 -0.1262 -6.5600 3.5785 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000133271294.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:40:21 Heat of formation + Delta-G solvation = 9.723611 kcal Electronic energy + Delta-G solvation = -20349.294021 eV Core-core repulsion = 17066.671416 eV Total energy + Delta-G solvation = -3282.622605 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.73163 -39.22362 -37.25807 -35.74760 -33.02896 -32.49384 -31.30053 -31.23918 -28.05007 -26.87884 -26.15553 -24.04840 -22.92909 -21.79055 -21.07600 -20.01091 -18.19474 -17.26489 -16.75420 -16.17588 -16.11070 -15.52102 -15.23698 -14.65356 -14.40676 -14.34323 -14.00049 -13.74199 -13.66897 -13.34490 -13.23141 -12.64888 -12.37412 -11.84112 -11.64952 -11.47484 -11.41705 -11.13061 -10.99263 -10.81963 -10.69243 -10.50137 -9.96476 -9.51498 -9.24643 -9.23419 -9.11014 -8.79064 -8.42347 -7.26802 -6.02426 -4.02932 0.84050 1.07861 1.99666 2.96813 3.37102 3.39930 3.44201 3.45262 4.32773 4.43988 4.45062 4.59813 4.70527 4.77853 4.86425 4.91629 5.03610 5.06851 5.18730 5.29671 5.33898 5.60423 5.67227 5.69857 5.72993 6.09888 6.17046 6.21870 6.32120 6.41329 6.63271 6.80483 6.97088 7.20094 7.28427 7.42115 7.80160 8.03921 8.16534 8.49800 8.58136 9.04739 9.61116 11.08598 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.046439 B = 0.002512 C = 0.002486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.802243 B =11144.721299 C =11261.350806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.523 5.523 3 C 0.194 3.806 4 C -0.506 4.506 5 H 0.065 0.935 6 C 0.055 3.945 7 N -0.901 5.901 8 Si 0.900 3.100 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.275 1.275 12 C 0.052 3.948 13 C 0.524 3.476 14 O -0.497 6.497 15 N -0.608 5.608 16 O -0.142 6.142 17 C 0.074 3.926 18 C -0.090 4.090 19 C -0.094 4.094 20 C -0.124 4.124 21 C -0.111 4.111 22 C -0.124 4.124 23 C -0.094 4.094 24 H 0.007 0.993 25 H 0.076 0.924 26 H 0.065 0.935 27 H -0.006 1.006 28 H 0.032 0.968 29 H 0.262 0.738 30 H 0.057 0.943 31 H 0.103 0.897 32 H 0.404 0.596 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.126 0.874 36 H 0.125 0.875 37 H 0.123 0.877 38 H 0.125 0.875 39 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.229 -22.977 12.172 26.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.249 5.249 3 C 0.069 3.931 4 C -0.544 4.544 5 H 0.083 0.917 6 C -0.146 4.146 7 N -0.541 5.541 8 Si 0.728 3.272 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.201 1.201 12 C -0.080 4.080 13 C 0.311 3.689 14 O -0.368 6.368 15 N -0.314 5.314 16 O -0.146 6.146 17 C -0.003 4.003 18 C -0.092 4.092 19 C -0.112 4.112 20 C -0.142 4.142 21 C -0.129 4.129 22 C -0.142 4.142 23 C -0.113 4.113 24 H 0.025 0.975 25 H 0.095 0.905 26 H 0.083 0.917 27 H 0.012 0.988 28 H 0.050 0.950 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.121 0.879 32 H 0.243 0.757 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.144 0.856 36 H 0.143 0.857 37 H 0.141 0.859 38 H 0.143 0.857 39 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -0.574 -23.340 10.859 25.748 hybrid contribution -0.028 0.872 0.601 1.060 sum -0.603 -22.467 11.460 25.228 Atomic orbital electron populations 1.22400 0.87794 1.01362 1.00193 1.61824 1.08080 1.17348 1.37622 1.19803 0.95427 0.80733 0.97095 1.21115 1.34844 0.96861 1.01624 0.91665 1.24978 0.95271 0.97266 0.97102 1.69942 1.38487 1.11506 1.34124 0.86516 0.78761 0.78180 0.83719 1.20237 1.21397 1.20092 1.21835 1.02396 0.88034 0.95740 1.21328 0.79252 0.86747 0.81610 1.90681 1.37744 1.79217 1.29141 1.47903 1.60540 0.95692 1.27267 1.90684 1.76934 1.03952 1.43014 1.21729 0.99474 0.87593 0.91478 1.19385 0.95848 0.93325 1.00598 1.21124 0.99762 0.93723 0.96588 1.21173 0.97025 0.95761 1.00218 1.21246 0.94391 0.99865 0.97439 1.21167 0.99862 0.93836 0.99347 1.21109 0.95118 0.95933 0.99099 0.97469 0.90515 0.91655 0.98802 0.95015 0.92872 0.92507 0.87909 0.75727 0.91354 0.91267 0.85638 0.85687 0.85864 0.85715 0.85710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.66 9.03 60.06 0.54 1.20 16 2 N -0.52 -11.83 4.49 -245.83 -1.10 -12.94 16 3 C 0.19 5.02 4.72 -4.98 -0.02 5.00 16 4 C -0.51 -14.41 8.46 -34.44 -0.29 -14.71 16 5 H 0.07 1.87 7.12 -52.49 -0.37 1.50 16 6 C 0.05 1.56 5.46 -17.82 -0.10 1.47 16 7 N -0.90 -26.57 13.29 55.43 0.74 -25.83 16 8 Si 0.90 21.92 29.54 -169.99 -5.02 16.90 16 9 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 10 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 12 C 0.05 0.90 5.45 -4.98 -0.03 0.88 16 13 C 0.52 9.18 7.70 -10.99 -0.08 9.10 16 14 O -0.50 -11.09 14.72 -12.63 -0.19 -11.27 16 15 N -0.61 -8.11 6.39 31.22 0.20 -7.91 16 16 O -0.14 -2.04 11.09 -29.66 -0.33 -2.37 16 17 C 0.07 0.71 6.35 36.01 0.23 0.94 16 18 C -0.09 -0.90 5.51 -104.62 -0.58 -1.47 16 19 C -0.09 -0.88 9.70 -39.58 -0.38 -1.26 16 20 C -0.12 -1.02 10.05 -39.58 -0.40 -1.42 16 21 C -0.11 -0.87 10.05 -39.58 -0.40 -1.27 16 22 C -0.12 -1.01 10.05 -39.58 -0.40 -1.41 16 23 C -0.09 -0.87 9.70 -39.58 -0.38 -1.25 16 24 H 0.01 0.14 8.14 -51.93 -0.42 -0.28 16 25 H 0.08 1.75 6.76 -51.93 -0.35 1.40 16 26 H 0.06 1.38 5.88 -51.93 -0.31 1.08 16 27 H -0.01 -0.16 8.12 -51.93 -0.42 -0.58 16 28 H 0.03 0.85 7.93 -51.93 -0.41 0.44 16 29 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 30 H 0.06 0.86 8.12 -51.93 -0.42 0.44 16 31 H 0.10 1.59 7.93 -51.93 -0.41 1.17 16 32 H 0.40 3.59 8.54 -40.82 -0.35 3.24 16 33 H 0.07 0.52 8.08 -51.93 -0.42 0.10 16 34 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 35 H 0.13 1.02 8.06 -52.48 -0.42 0.60 16 36 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 37 H 0.12 0.68 8.06 -52.49 -0.42 0.25 16 38 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 39 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 LS Contribution 336.37 15.07 5.07 5.07 Total: -1.00 -35.40 336.37 -8.48 -43.88 By element: Atomic # 1 Polarization: 4.23 SS G_CDS: -5.56 Total: -1.33 kcal Atomic # 6 Polarization: -1.92 SS G_CDS: -2.29 Total: -4.21 kcal Atomic # 7 Polarization: -46.51 SS G_CDS: -0.17 Total: -46.68 kcal Atomic # 8 Polarization: -13.12 SS G_CDS: -0.51 Total: -13.64 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -35.40 -8.48 -43.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133271294.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.606 kcal (2) G-P(sol) polarization free energy of solvation -35.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.882 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds