Wall clock time and date at job start Tue Mar 31 2020 01:40:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46899 * 110.99989 * 2 1 4 4 C 1.50700 * 109.47437 * 293.95750 * 3 2 1 5 5 H 1.07998 * 120.00136 * 0.02562 * 4 3 2 6 6 C 1.37874 * 119.99901 * 179.97438 * 4 3 2 7 7 N 1.31520 * 120.00301 * 359.97438 * 6 4 3 8 8 Si 1.86805 * 119.99911 * 180.02562 * 6 4 3 9 9 H 1.48498 * 109.47303 * 59.99828 * 8 6 4 10 10 H 1.48494 * 109.47159 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.46733 * 299.99994 * 8 6 4 12 12 C 1.46901 * 111.00418 * 123.96138 * 2 1 3 13 13 C 1.50694 * 109.46984 * 66.04179 * 12 2 1 14 14 O 1.21276 * 120.00464 * 0.02562 * 13 12 2 15 15 N 1.34779 * 119.99932 * 180.02562 * 13 12 2 16 16 O 1.41600 * 120.00395 * 179.97438 * 15 13 12 17 17 C 1.42893 * 113.99989 * 180.02562 * 16 15 13 18 18 C 1.50707 * 109.47070 * 179.97438 * 17 16 15 19 19 C 1.38238 * 119.99792 * 89.99993 * 18 17 16 20 20 C 1.38235 * 119.99712 * 179.97438 * 19 18 17 21 21 C 1.38234 * 120.00220 * 359.97124 * 20 19 18 22 22 C 1.38233 * 120.00037 * 0.28719 * 21 20 19 23 23 C 1.38234 * 120.00179 * 269.97930 * 18 17 16 24 24 H 1.09001 * 109.46737 * 296.03753 * 1 2 3 25 25 H 1.09003 * 109.47144 * 56.04079 * 1 2 3 26 26 H 1.08995 * 109.47081 * 176.04321 * 1 2 3 27 27 H 1.08996 * 109.46787 * 53.95980 * 3 2 1 28 28 H 1.09005 * 109.46825 * 173.95770 * 3 2 1 29 29 H 0.96994 * 119.99966 * 180.02562 * 7 6 4 30 30 H 1.09000 * 109.46411 * 306.04380 * 12 2 1 31 31 H 1.08993 * 109.47171 * 186.04528 * 12 2 1 32 32 H 0.97001 * 119.99823 * 0.02562 * 15 13 12 33 33 H 1.09005 * 109.47744 * 60.00324 * 17 16 15 34 34 H 1.09000 * 109.47353 * 299.99523 * 17 16 15 35 35 H 1.08005 * 120.00068 * 359.97438 * 19 18 17 36 36 H 1.07999 * 119.99770 * 179.97438 * 20 19 18 37 37 H 1.08002 * 119.99744 * 180.02562 * 21 20 19 38 38 H 1.07998 * 120.00395 * 179.72811 * 22 21 20 39 39 H 1.07999 * 119.99968 * 359.97438 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0472 -1.2984 5 1 1.0738 1.5117 -2.0484 6 6 2.0267 3.3495 -1.5283 7 7 2.7111 4.0023 -0.6143 8 14 1.5817 4.1875 -3.1375 9 1 0.1044 4.2239 -3.2846 10 1 2.1129 5.5741 -3.1369 11 1 2.1733 3.4306 -4.2698 12 6 1.9955 -0.7661 1.1375 13 6 1.6370 -2.2205 0.9726 14 8 1.0055 -2.5832 0.0029 15 7 2.0181 -3.1181 1.9029 16 8 1.6808 -4.4847 1.7483 17 6 2.1477 -5.3220 2.8079 18 6 1.7341 -6.7466 2.5419 19 6 2.5658 -7.5851 1.8234 20 6 2.1866 -8.8919 1.5799 21 6 0.9760 -9.3604 2.0552 22 6 0.1420 -8.5204 2.7690 23 6 0.5232 -7.2149 3.0166 24 1 -0.3633 0.4511 0.9234 25 1 -0.3633 0.5741 -0.8524 26 1 -0.3633 -1.0252 -0.0709 27 1 1.5612 1.9272 0.8310 28 1 3.0798 1.3443 0.1082 29 1 2.9850 4.9186 -0.7760 30 1 1.5612 -0.3874 2.0627 31 1 3.0798 -0.6612 1.1754 32 1 2.5229 -2.8280 2.6787 33 1 1.7157 -4.9889 3.7516 34 1 3.2346 -5.2636 2.8651 35 1 3.5118 -7.2191 1.4524 36 1 2.8361 -9.5469 1.0182 37 1 0.6800 -10.3815 1.8652 38 1 -0.8058 -8.8851 3.1366 39 1 -0.1262 -6.5600 3.5785 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000133271294.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:40:20 Heat of formation + Delta-G solvation = -14.165573 kcal Electronic energy + Delta-G solvation = -20350.329934 eV Core-core repulsion = 17066.671416 eV Total energy + Delta-G solvation = -3283.658518 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.77277 -40.22428 -38.40125 -37.40346 -34.61522 -34.02441 -32.27877 -31.85681 -29.77943 -28.58566 -27.00154 -25.92847 -23.55411 -22.86340 -22.44695 -21.42581 -19.27570 -18.58286 -18.09518 -17.61394 -17.06519 -16.65759 -16.38190 -16.18709 -15.84869 -15.64233 -15.41782 -14.84680 -14.71315 -14.31135 -14.29547 -13.92482 -13.64596 -13.32252 -13.30000 -12.83767 -12.66553 -12.58282 -12.43079 -12.21750 -12.09161 -11.95789 -11.83086 -11.44444 -10.83020 -10.58531 -9.95296 -9.87781 -9.86096 -9.02054 -8.19129 -6.27420 0.12575 0.44225 0.96470 1.43102 1.45669 1.53777 1.60950 2.42634 2.78142 3.13596 3.29681 3.53891 3.79451 3.82156 3.83286 4.08899 4.24202 4.24239 4.30751 4.33878 4.40188 4.57665 4.58601 4.69243 4.69959 4.99668 5.09332 5.13486 5.18257 5.30145 5.48302 5.55498 5.56211 5.65298 5.74279 6.02395 6.03013 6.27001 6.31122 6.62337 6.86475 7.32300 7.41415 8.91285 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.046439 B = 0.002512 C = 0.002486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.802243 B =11144.721299 C =11261.350806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.545 5.545 3 C 0.210 3.790 4 C -0.528 4.528 5 H 0.055 0.945 6 C 0.007 3.993 7 N -0.929 5.929 8 Si 0.965 3.035 9 H -0.270 1.270 10 H -0.279 1.279 11 H -0.272 1.272 12 C 0.052 3.948 13 C 0.529 3.471 14 O -0.554 6.554 15 N -0.586 5.586 16 O -0.171 6.171 17 C 0.071 3.929 18 C -0.111 4.111 19 C -0.110 4.110 20 C -0.132 4.132 21 C -0.115 4.115 22 C -0.132 4.132 23 C -0.109 4.109 24 H 0.020 0.980 25 H 0.055 0.945 26 H 0.068 0.932 27 H -0.022 1.022 28 H 0.019 0.981 29 H 0.266 0.734 30 H 0.087 0.913 31 H 0.123 0.877 32 H 0.427 0.573 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.131 0.869 36 H 0.144 0.856 37 H 0.147 0.853 38 H 0.145 0.855 39 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.147 -23.970 12.838 27.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.270 5.270 3 C 0.084 3.916 4 C -0.566 4.566 5 H 0.073 0.927 6 C -0.192 4.192 7 N -0.569 5.569 8 Si 0.790 3.210 9 H -0.195 1.195 10 H -0.204 1.204 11 H -0.198 1.198 12 C -0.080 4.080 13 C 0.316 3.684 14 O -0.429 6.429 15 N -0.291 5.291 16 O -0.176 6.176 17 C -0.005 4.005 18 C -0.113 4.113 19 C -0.129 4.129 20 C -0.150 4.150 21 C -0.133 4.133 22 C -0.150 4.150 23 C -0.128 4.128 24 H 0.038 0.962 25 H 0.074 0.926 26 H 0.087 0.913 27 H -0.005 1.005 28 H 0.037 0.963 29 H 0.074 0.926 30 H 0.104 0.896 31 H 0.140 0.860 32 H 0.270 0.730 33 H 0.107 0.893 34 H 0.106 0.894 35 H 0.149 0.851 36 H 0.162 0.838 37 H 0.165 0.835 38 H 0.163 0.837 39 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -0.462 -24.358 11.597 26.982 hybrid contribution -0.029 1.022 0.499 1.138 sum -0.491 -23.336 12.096 26.290 Atomic orbital electron populations 1.22264 0.87439 1.01209 0.99889 1.61626 1.08624 1.15794 1.40962 1.19455 0.94409 0.82331 0.95391 1.21412 1.35053 0.97560 1.02584 0.92682 1.25793 0.95030 0.97843 1.00491 1.70035 1.39143 1.11911 1.35847 0.85504 0.78734 0.77296 0.79491 1.19547 1.20448 1.19750 1.21902 1.03554 0.87517 0.95003 1.21170 0.78639 0.87187 0.81387 1.90661 1.40522 1.80168 1.31544 1.47410 1.59154 0.95672 1.26858 1.90679 1.77630 1.03866 1.45404 1.21986 1.00735 0.86743 0.90998 1.19567 0.96555 0.93553 1.01591 1.21356 1.00204 0.94419 0.96878 1.21491 0.97625 0.95709 1.00204 1.21607 0.94053 1.00999 0.96671 1.21495 1.00775 0.93575 0.99150 1.21351 0.95171 0.96760 0.99480 0.96169 0.92619 0.91330 1.00472 0.96307 0.92564 0.89555 0.85951 0.72992 0.89302 0.89427 0.85092 0.83826 0.83514 0.83747 0.84959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.74 9.03 127.69 1.15 2.89 16 2 N -0.54 -24.63 4.49 -931.67 -4.18 -28.81 16 3 C 0.21 10.96 4.72 85.56 0.40 11.36 16 4 C -0.53 -30.42 8.46 25.60 0.22 -30.21 16 5 H 0.05 3.22 7.12 -2.91 -0.02 3.20 16 6 C 0.01 0.39 5.46 84.65 0.46 0.85 16 7 N -0.93 -54.85 13.29 21.45 0.28 -54.56 16 8 Si 0.96 44.89 29.54 68.60 2.03 46.92 16 9 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 10 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 11 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 12 C 0.05 1.72 5.45 85.55 0.47 2.19 16 13 C 0.53 18.03 7.70 87.65 0.67 18.71 16 14 O -0.55 -24.79 14.72 14.38 0.21 -24.58 16 15 N -0.59 -14.59 6.39 -173.54 -1.11 -15.69 16 16 O -0.17 -4.70 11.09 -21.39 -0.24 -4.94 16 17 C 0.07 1.24 6.35 71.24 0.45 1.70 16 18 C -0.11 -2.11 5.51 -19.86 -0.11 -2.22 16 19 C -0.11 -1.97 9.70 22.27 0.22 -1.75 16 20 C -0.13 -2.00 10.05 22.27 0.22 -1.78 16 21 C -0.12 -1.60 10.05 22.27 0.22 -1.37 16 22 C -0.13 -1.96 10.05 22.27 0.22 -1.73 16 23 C -0.11 -1.91 9.70 22.27 0.22 -1.69 16 24 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 25 H 0.05 2.59 6.76 -2.39 -0.02 2.57 16 26 H 0.07 2.93 5.88 -2.39 -0.01 2.91 16 27 H -0.02 -1.22 8.12 -2.39 -0.02 -1.24 16 28 H 0.02 1.02 7.93 -2.38 -0.02 1.00 16 29 H 0.27 14.76 8.31 -92.71 -0.77 13.99 16 30 H 0.09 2.40 8.12 -2.39 -0.02 2.38 16 31 H 0.12 3.56 7.93 -2.39 -0.02 3.54 16 32 H 0.43 6.45 8.54 -92.71 -0.79 5.66 16 33 H 0.09 1.15 8.08 -2.38 -0.02 1.13 16 34 H 0.09 1.17 8.09 -2.39 -0.02 1.15 16 35 H 0.13 2.04 8.06 -2.91 -0.02 2.01 16 36 H 0.14 1.51 8.06 -2.91 -0.02 1.48 16 37 H 0.15 1.24 8.06 -2.91 -0.02 1.22 16 38 H 0.14 1.45 8.06 -2.91 -0.02 1.43 16 39 H 0.13 1.96 8.06 -2.91 -0.02 1.94 16 Total: -1.00 -76.69 336.37 2.07 -74.62 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: 0.26 Total: 10.10 kcal Atomic # 6 Polarization: -7.87 SS G_CDS: 4.82 Total: -3.05 kcal Atomic # 7 Polarization: -94.06 SS G_CDS: -5.01 Total: -99.07 kcal Atomic # 8 Polarization: -29.49 SS G_CDS: -0.03 Total: -29.52 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -76.69 2.07 -74.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133271294.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.454 kcal (2) G-P(sol) polarization free energy of solvation -76.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds