Wall clock time and date at job start Tue Mar 31 2020 00:31:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42903 * 109.46950 * 2 1 4 4 C 1.35427 * 116.99879 * 179.97438 * 3 2 1 5 5 N 1.32238 * 119.80095 * 0.02562 * 4 3 2 6 6 C 1.31884 * 121.80410 * 179.97438 * 5 4 3 7 7 C 1.38358 * 121.18304 * 359.97438 * 6 5 4 8 8 C 1.38342 * 119.45797 * 0.02562 * 7 6 5 9 9 C 1.39993 * 118.34971 * 359.97438 * 8 7 6 10 10 C 1.47520 * 120.59682 * 180.02562 * 9 8 7 11 11 O 1.21588 * 119.99783 * 234.99659 * 10 9 8 12 12 N 1.34774 * 120.00205 * 54.99376 * 10 9 8 13 13 C 1.46500 * 119.99931 * 5.54433 * 12 10 9 14 14 C 1.52996 * 109.47110 * 94.96028 * 13 12 10 15 15 C 1.46503 * 120.00211 * 185.54444 * 12 10 9 16 16 C 1.50695 * 109.47008 * 89.99716 * 15 12 10 17 17 H 1.08005 * 120.00335 * 0.02562 * 16 15 12 18 18 C 1.37879 * 119.99613 * 179.97438 * 16 15 12 19 19 N 1.31513 * 120.00506 * 0.02562 * 18 16 15 20 20 Si 1.86807 * 119.99696 * 180.02562 * 18 16 15 21 21 H 1.48490 * 109.47151 * 0.02562 * 20 18 16 22 22 H 1.48506 * 109.46934 * 120.00422 * 20 18 16 23 23 H 1.48497 * 109.46945 * 240.00153 * 20 18 16 24 24 H 1.08998 * 109.46999 * 300.00298 * 1 2 3 25 25 H 1.09002 * 109.46707 * 59.99812 * 1 2 3 26 26 H 1.08999 * 109.47176 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47327 * 240.00342 * 2 1 3 28 28 H 1.08997 * 109.47021 * 119.99522 * 2 1 3 29 29 H 1.07998 * 119.40855 * 179.97438 * 6 5 4 30 30 H 1.07999 * 120.27313 * 180.02562 * 7 6 5 31 31 H 1.07997 * 120.82614 * 180.02562 * 8 7 6 32 32 H 1.09002 * 109.47290 * 214.96425 * 13 12 10 33 33 H 1.09008 * 109.47201 * 334.96029 * 13 12 10 34 34 H 1.09001 * 109.46733 * 179.97438 * 14 13 12 35 35 H 1.08998 * 109.47604 * 299.99880 * 14 13 12 36 36 H 1.09001 * 109.46878 * 60.00578 * 14 13 12 37 37 H 1.09000 * 109.46896 * 210.00004 * 15 12 10 38 38 H 1.09006 * 109.46847 * 329.99816 * 15 12 10 39 39 H 0.96998 * 120.00700 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3489 1.5248 0.0005 5 7 4.1508 0.4733 0.0005 6 6 5.4635 0.6003 0.0005 7 6 6.0626 1.8474 0.0000 8 6 5.2714 2.9823 0.0001 9 6 3.8806 2.8229 0.0000 10 6 2.9900 3.9990 -0.0005 11 8 2.1415 4.1194 0.8619 12 7 3.1171 4.9401 -0.9569 13 6 4.0551 4.7375 -2.0639 14 6 3.3108 4.1418 -3.2605 15 6 2.3172 6.1656 -0.8896 16 6 3.0695 7.2143 -0.1116 17 1 4.0460 6.9905 0.2920 18 6 2.5116 8.4599 0.0841 19 7 1.3228 8.7327 -0.4078 20 14 3.4445 9.7602 1.0478 21 1 4.7496 9.2071 1.4902 22 1 3.6769 10.9452 0.1835 23 1 2.6485 10.1621 2.2353 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5137 -0.8899 28 1 1.8933 -0.5137 0.8900 29 1 6.0820 -0.2851 0.0009 30 1 7.1391 1.9344 -0.0004 31 1 5.7156 3.9666 -0.0007 32 1 4.4936 5.6940 -2.3482 33 1 4.8449 4.0546 -1.7506 34 1 4.0086 3.9915 -4.0842 35 1 2.8723 3.1852 -2.9762 36 1 2.5211 4.8247 -3.5738 37 1 2.1251 6.5299 -1.8988 38 1 1.3701 5.9545 -0.3930 39 1 0.9301 9.6089 -0.2698 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000133541415.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:31:45 Heat of formation + Delta-G solvation = -35.367132 kcal Electronic energy + Delta-G solvation = -22089.328856 eV Core-core repulsion = 18804.750969 eV Total energy + Delta-G solvation = -3284.577887 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 4.46 seconds Orbital eigenvalues (eV) -40.77168 -38.64646 -37.87538 -35.23190 -33.01187 -32.29922 -32.01894 -30.05109 -30.00078 -27.14496 -24.66195 -23.98839 -22.98544 -22.36039 -22.04377 -19.09585 -18.30541 -16.89895 -16.65033 -16.34320 -16.24226 -15.49613 -15.15015 -14.39538 -14.28319 -13.83668 -13.80379 -13.53655 -13.17626 -12.97589 -12.58224 -12.48707 -12.34259 -12.10370 -11.97478 -11.61426 -11.47513 -11.20998 -10.88057 -10.80765 -10.67143 -10.58844 -10.12846 -9.86484 -9.72463 -9.60429 -8.91007 -8.44973 -8.38946 -7.62263 -6.03288 -4.08355 0.95205 1.27371 3.04947 3.30093 3.36110 3.38756 3.42398 3.76401 3.96381 4.28997 4.45666 4.84240 4.96837 5.01416 5.02900 5.07276 5.20535 5.30781 5.35931 5.40135 5.48866 5.66579 5.68810 5.82745 5.84893 5.92984 6.05558 6.09709 6.12793 6.27650 6.38747 6.54047 7.09038 7.32841 7.48762 7.57005 7.79173 7.93521 8.24362 8.42703 8.90342 9.09567 9.56738 11.04742 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.019203 B = 0.005251 C = 0.004799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.776238 B = 5331.251671 C = 5833.665839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.066 3.934 3 O -0.286 6.286 4 C 0.358 3.642 5 N -0.545 5.545 6 C 0.146 3.854 7 C -0.218 4.218 8 C -0.014 4.014 9 C -0.182 4.182 10 C 0.561 3.439 11 O -0.524 6.524 12 N -0.590 5.590 13 C 0.100 3.900 14 C -0.166 4.166 15 C 0.246 3.754 16 C -0.527 4.527 17 H 0.058 0.942 18 C 0.061 3.939 19 N -0.893 5.893 20 Si 0.898 3.102 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.283 1.283 24 H 0.068 0.932 25 H 0.065 0.935 26 H 0.076 0.924 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.160 0.840 30 H 0.141 0.859 31 H 0.148 0.852 32 H 0.081 0.919 33 H 0.068 0.932 34 H 0.058 0.942 35 H 0.048 0.952 36 H 0.062 0.938 37 H 0.034 0.966 38 H 0.045 0.955 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.725 -16.777 -3.686 18.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.009 4.009 3 O -0.192 6.192 4 C 0.178 3.822 5 N -0.269 5.269 6 C -0.010 4.010 7 C -0.238 4.238 8 C -0.040 4.040 9 C -0.188 4.188 10 C 0.346 3.654 11 O -0.400 6.400 12 N -0.322 5.322 13 C -0.024 4.024 14 C -0.224 4.224 15 C 0.127 3.873 16 C -0.566 4.566 17 H 0.076 0.924 18 C -0.141 4.141 19 N -0.532 5.532 20 Si 0.725 3.275 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.209 1.209 24 H 0.087 0.913 25 H 0.084 0.916 26 H 0.095 0.905 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.177 0.823 30 H 0.158 0.842 31 H 0.166 0.834 32 H 0.100 0.900 33 H 0.086 0.914 34 H 0.077 0.923 35 H 0.067 0.933 36 H 0.081 0.919 37 H 0.052 0.948 38 H 0.063 0.937 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 6.472 -17.169 -3.251 18.634 hybrid contribution 1.009 1.378 0.462 1.770 sum 7.481 -15.791 -2.789 17.695 Atomic orbital electron populations 1.21812 0.92963 1.02476 1.03870 1.22619 0.95039 0.81154 1.02105 1.86386 1.16196 1.30194 1.86430 1.19690 0.84290 0.88471 0.89718 1.67377 1.06610 1.32516 1.20405 1.22491 0.89143 0.97395 0.91982 1.21878 1.01412 0.92970 1.07549 1.21636 0.91013 1.00180 0.91138 1.20265 0.94894 0.93204 1.10473 1.17657 0.83483 0.81662 0.82639 1.90772 1.34816 1.77120 1.37301 1.48157 1.41445 1.19984 1.22577 1.21586 0.92105 1.01443 0.87246 1.22160 1.01183 1.01073 0.98018 1.19303 0.91581 0.78778 0.97603 1.21472 1.03768 0.96820 1.34509 0.92407 1.24934 0.94973 0.98394 0.95763 1.69943 1.15558 1.22312 1.45434 0.86450 0.79902 0.81286 0.79814 1.19807 1.20969 1.20873 0.91315 0.91552 0.90499 0.91806 0.91712 0.82317 0.84164 0.83435 0.90015 0.91368 0.92312 0.93293 0.91937 0.94841 0.93652 0.92758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 10.28 37.16 0.38 -1.35 16 2 C 0.07 0.88 6.03 37.16 0.22 1.10 16 3 O -0.29 -5.15 9.36 -19.72 -0.18 -5.33 16 4 C 0.36 6.17 7.50 -16.61 -0.12 6.05 16 5 N -0.54 -7.86 9.21 -12.98 -0.12 -7.97 16 6 C 0.15 1.63 11.17 -17.48 -0.20 1.44 16 7 C -0.22 -2.36 10.09 -39.50 -0.40 -2.76 16 8 C -0.01 -0.20 7.63 -38.89 -0.30 -0.49 16 9 C -0.18 -3.29 4.92 -104.69 -0.51 -3.81 16 10 C 0.56 12.73 6.81 -12.48 -0.08 12.64 16 11 O -0.52 -14.24 16.36 3.54 0.06 -14.18 16 12 N -0.59 -13.03 2.46 -176.29 -0.43 -13.46 16 13 C 0.10 1.70 5.97 -4.04 -0.02 1.68 16 14 C -0.17 -2.50 10.24 37.16 0.38 -2.12 16 15 C 0.25 6.56 5.23 -5.19 -0.03 6.53 16 16 C -0.53 -14.96 9.39 -34.44 -0.32 -15.28 16 17 H 0.06 1.62 7.81 -52.48 -0.41 1.21 16 18 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 19 N -0.89 -26.69 13.29 55.43 0.74 -25.95 16 20 Si 0.90 21.83 29.54 -169.99 -5.02 16.81 16 21 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 24 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 25 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.06 0.77 8.10 -51.93 -0.42 0.35 16 28 H 0.06 0.81 8.10 -51.93 -0.42 0.39 16 29 H 0.16 1.15 8.06 -52.49 -0.42 0.73 16 30 H 0.14 1.04 8.06 -52.49 -0.42 0.61 16 31 H 0.15 1.95 7.61 -52.49 -0.40 1.55 16 32 H 0.08 1.38 8.11 -51.93 -0.42 0.96 16 33 H 0.07 0.99 4.43 -51.92 -0.23 0.76 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.03 0.90 8.07 -51.93 -0.42 0.48 16 38 H 0.05 1.37 7.35 -51.93 -0.38 0.99 16 39 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 335.10 15.07 5.05 5.05 Total: -1.00 -34.78 335.10 -6.63 -41.42 By element: Atomic # 1 Polarization: 3.96 SS G_CDS: -5.62 Total: -1.66 kcal Atomic # 6 Polarization: 6.39 SS G_CDS: -1.10 Total: 5.29 kcal Atomic # 7 Polarization: -47.57 SS G_CDS: 0.18 Total: -47.39 kcal Atomic # 8 Polarization: -19.39 SS G_CDS: -0.13 Total: -19.52 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -34.78 -6.63 -41.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133541415.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.051 kcal (2) G-P(sol) polarization free energy of solvation -34.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.47 seconds