Wall clock time and date at job start Tue Mar 31 2020 00:31:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42903 * 109.46950 * 2 1 4 4 C 1.35427 * 116.99879 * 179.97438 * 3 2 1 5 5 N 1.32238 * 119.80095 * 0.02562 * 4 3 2 6 6 C 1.31884 * 121.80410 * 179.97438 * 5 4 3 7 7 C 1.38358 * 121.18304 * 359.97438 * 6 5 4 8 8 C 1.38342 * 119.45797 * 0.02562 * 7 6 5 9 9 C 1.39993 * 118.34971 * 359.97438 * 8 7 6 10 10 C 1.47520 * 120.59682 * 180.02562 * 9 8 7 11 11 O 1.21588 * 119.99783 * 234.99659 * 10 9 8 12 12 N 1.34774 * 120.00205 * 54.99376 * 10 9 8 13 13 C 1.46500 * 119.99931 * 5.54433 * 12 10 9 14 14 C 1.52996 * 109.47110 * 94.96028 * 13 12 10 15 15 C 1.46503 * 120.00211 * 185.54444 * 12 10 9 16 16 C 1.50695 * 109.47008 * 89.99716 * 15 12 10 17 17 H 1.08005 * 120.00335 * 0.02562 * 16 15 12 18 18 C 1.37879 * 119.99613 * 179.97438 * 16 15 12 19 19 N 1.31513 * 120.00506 * 0.02562 * 18 16 15 20 20 Si 1.86807 * 119.99696 * 180.02562 * 18 16 15 21 21 H 1.48490 * 109.47151 * 0.02562 * 20 18 16 22 22 H 1.48506 * 109.46934 * 120.00422 * 20 18 16 23 23 H 1.48497 * 109.46945 * 240.00153 * 20 18 16 24 24 H 1.08998 * 109.46999 * 300.00298 * 1 2 3 25 25 H 1.09002 * 109.46707 * 59.99812 * 1 2 3 26 26 H 1.08999 * 109.47176 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47327 * 240.00342 * 2 1 3 28 28 H 1.08997 * 109.47021 * 119.99522 * 2 1 3 29 29 H 1.07998 * 119.40855 * 179.97438 * 6 5 4 30 30 H 1.07999 * 120.27313 * 180.02562 * 7 6 5 31 31 H 1.07997 * 120.82614 * 180.02562 * 8 7 6 32 32 H 1.09002 * 109.47290 * 214.96425 * 13 12 10 33 33 H 1.09008 * 109.47201 * 334.96029 * 13 12 10 34 34 H 1.09001 * 109.46733 * 179.97438 * 14 13 12 35 35 H 1.08998 * 109.47604 * 299.99880 * 14 13 12 36 36 H 1.09001 * 109.46878 * 60.00578 * 14 13 12 37 37 H 1.09000 * 109.46896 * 210.00004 * 15 12 10 38 38 H 1.09006 * 109.46847 * 329.99816 * 15 12 10 39 39 H 0.96998 * 120.00700 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3489 1.5248 0.0005 5 7 4.1508 0.4733 0.0005 6 6 5.4635 0.6003 0.0005 7 6 6.0626 1.8474 0.0000 8 6 5.2714 2.9823 0.0001 9 6 3.8806 2.8229 0.0000 10 6 2.9900 3.9990 -0.0005 11 8 2.1415 4.1194 0.8619 12 7 3.1171 4.9401 -0.9569 13 6 4.0551 4.7375 -2.0639 14 6 3.3108 4.1418 -3.2605 15 6 2.3172 6.1656 -0.8896 16 6 3.0695 7.2143 -0.1116 17 1 4.0460 6.9905 0.2920 18 6 2.5116 8.4599 0.0841 19 7 1.3228 8.7327 -0.4078 20 14 3.4445 9.7602 1.0478 21 1 4.7496 9.2071 1.4902 22 1 3.6769 10.9452 0.1835 23 1 2.6485 10.1621 2.2353 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5137 -0.8899 28 1 1.8933 -0.5137 0.8900 29 1 6.0820 -0.2851 0.0009 30 1 7.1391 1.9344 -0.0004 31 1 5.7156 3.9666 -0.0007 32 1 4.4936 5.6940 -2.3482 33 1 4.8449 4.0546 -1.7506 34 1 4.0086 3.9915 -4.0842 35 1 2.8723 3.1852 -2.9762 36 1 2.5211 4.8247 -3.5738 37 1 2.1251 6.5299 -1.8988 38 1 1.3701 5.9545 -0.3930 39 1 0.9301 9.6089 -0.2698 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000133541415.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:31:44 Heat of formation + Delta-G solvation = -60.367691 kcal Electronic energy + Delta-G solvation = -22090.412961 eV Core-core repulsion = 18804.750969 eV Total energy + Delta-G solvation = -3285.661992 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.98364 -40.25548 -39.03506 -37.00667 -34.99114 -33.62942 -33.03220 -31.65847 -31.11897 -29.08653 -26.01279 -25.36803 -24.48302 -23.80604 -23.18827 -20.63460 -19.46237 -18.65675 -18.20211 -17.93139 -17.50260 -17.13592 -16.40843 -16.04726 -15.82600 -15.01875 -14.93856 -14.92083 -14.61489 -14.38716 -14.17984 -13.65666 -13.52171 -13.38659 -13.32683 -13.27005 -13.11227 -12.70535 -12.55644 -12.49606 -12.21270 -12.03132 -11.75719 -11.69965 -11.15873 -10.86717 -10.65173 -10.47252 -9.59794 -9.42191 -8.22865 -6.38529 -0.16185 0.22147 1.36893 1.39754 1.51615 1.76831 2.00749 2.22191 2.41795 2.72983 3.06707 3.24899 3.65535 3.86005 3.98019 4.03159 4.07943 4.12636 4.22356 4.35969 4.37986 4.48538 4.56872 4.77801 4.84290 4.87576 4.89280 4.92268 5.00273 5.12826 5.15001 5.18965 5.29180 5.46816 5.55760 5.82577 6.04058 6.23899 6.64113 6.71228 6.77451 7.24214 7.40117 8.85039 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.019203 B = 0.005251 C = 0.004799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.776238 B = 5331.251671 C = 5833.665839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.062 3.938 3 O -0.325 6.325 4 C 0.341 3.659 5 N -0.548 5.548 6 C 0.157 3.843 7 C -0.193 4.193 8 C -0.017 4.017 9 C -0.217 4.217 10 C 0.556 3.444 11 O -0.589 6.589 12 N -0.594 5.594 13 C 0.095 3.905 14 C -0.158 4.158 15 C 0.262 3.738 16 C -0.543 4.543 17 H 0.058 0.942 18 C 0.007 3.993 19 N -0.930 5.930 20 Si 0.972 3.028 21 H -0.263 1.263 22 H -0.268 1.268 23 H -0.283 1.283 24 H 0.051 0.949 25 H 0.056 0.944 26 H 0.112 0.888 27 H 0.076 0.924 28 H 0.069 0.931 29 H 0.210 0.790 30 H 0.190 0.810 31 H 0.154 0.846 32 H 0.082 0.918 33 H 0.100 0.900 34 H 0.099 0.901 35 H 0.040 0.960 36 H 0.041 0.959 37 H 0.024 0.976 38 H -0.006 1.006 39 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.564 -18.413 -4.072 22.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.012 4.012 3 O -0.232 6.232 4 C 0.163 3.837 5 N -0.273 5.273 6 C 0.001 3.999 7 C -0.212 4.212 8 C -0.043 4.043 9 C -0.223 4.223 10 C 0.344 3.656 11 O -0.470 6.470 12 N -0.324 5.324 13 C -0.027 4.027 14 C -0.216 4.216 15 C 0.141 3.859 16 C -0.581 4.581 17 H 0.077 0.923 18 C -0.192 4.192 19 N -0.570 5.570 20 Si 0.796 3.204 21 H -0.187 1.187 22 H -0.193 1.193 23 H -0.209 1.209 24 H 0.070 0.930 25 H 0.075 0.925 26 H 0.131 0.869 27 H 0.095 0.905 28 H 0.088 0.912 29 H 0.226 0.774 30 H 0.207 0.793 31 H 0.172 0.828 32 H 0.101 0.899 33 H 0.118 0.882 34 H 0.117 0.883 35 H 0.059 0.941 36 H 0.060 0.940 37 H 0.042 0.958 38 H 0.012 0.988 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 10.345 -18.830 -3.683 21.798 hybrid contribution -0.120 1.751 0.551 1.840 sum 10.225 -17.079 -3.131 20.151 Atomic orbital electron populations 1.21857 0.92002 1.04347 1.02555 1.22859 0.95858 0.79649 1.02847 1.86352 1.17370 1.32725 1.86716 1.19774 0.84425 0.88830 0.90680 1.67507 1.08030 1.31096 1.20641 1.23469 0.88235 0.99539 0.88680 1.22363 1.03336 0.91239 1.04268 1.21840 0.89393 1.02059 0.90969 1.19948 0.95803 0.91360 1.15224 1.18437 0.83211 0.82634 0.81321 1.90709 1.37830 1.78771 1.39690 1.48161 1.41592 1.18557 1.24095 1.21903 0.92039 1.02455 0.86256 1.22092 1.01305 0.99797 0.98383 1.18755 0.90315 0.80702 0.96108 1.21725 1.03903 0.97542 1.34944 0.92335 1.25916 0.95867 1.00824 0.96626 1.70074 1.17188 1.23155 1.46539 0.85303 0.78622 0.78372 0.78114 1.18665 1.19302 1.20940 0.92973 0.92483 0.86939 0.90534 0.91215 0.77351 0.79327 0.82793 0.89931 0.88225 0.88253 0.94115 0.93959 0.95769 0.98835 0.92376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.47 10.28 71.98 0.74 -2.73 16 2 C 0.06 1.66 6.03 71.98 0.43 2.10 16 3 O -0.32 -12.22 9.36 -85.55 -0.80 -13.02 16 4 C 0.34 11.76 7.50 85.13 0.64 12.40 16 5 N -0.55 -14.44 9.21 -307.99 -2.84 -17.28 16 6 C 0.16 2.72 11.17 84.71 0.95 3.66 16 7 C -0.19 -3.17 10.09 22.32 0.23 -2.94 16 8 C -0.02 -0.44 7.63 22.72 0.17 -0.26 16 9 C -0.22 -7.90 4.92 -19.91 -0.10 -8.00 16 10 C 0.56 26.70 6.81 86.69 0.59 27.29 16 11 O -0.59 -34.73 16.36 -2.32 -0.04 -34.77 16 12 N -0.59 -27.54 2.46 -829.93 -2.04 -29.58 16 13 C 0.10 3.22 5.97 86.38 0.52 3.73 16 14 C -0.16 -4.69 10.24 71.98 0.74 -3.96 16 15 C 0.26 14.93 5.23 85.63 0.45 15.38 16 16 C -0.54 -31.94 9.39 25.60 0.24 -31.70 16 17 H 0.06 3.35 7.81 -2.91 -0.02 3.33 16 18 C 0.01 0.38 5.46 84.66 0.46 0.84 16 19 N -0.93 -57.49 13.29 21.45 0.28 -57.20 16 20 Si 0.97 45.24 29.54 68.60 2.03 47.26 16 21 H -0.26 -11.66 7.11 99.48 0.71 -10.96 16 22 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 23 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 24 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 25 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 26 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 27 H 0.08 1.79 8.10 -2.39 -0.02 1.77 16 28 H 0.07 1.74 8.10 -2.39 -0.02 1.72 16 29 H 0.21 1.53 8.06 -2.91 -0.02 1.51 16 30 H 0.19 1.36 8.06 -2.91 -0.02 1.34 16 31 H 0.15 3.70 7.61 -2.91 -0.02 3.68 16 32 H 0.08 2.76 8.11 -2.39 -0.02 2.74 16 33 H 0.10 2.73 4.43 -2.38 -0.01 2.72 16 34 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 35 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.02 1.39 8.07 -2.39 -0.02 1.37 16 38 H -0.01 -0.43 7.35 -2.38 -0.02 -0.45 16 39 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 Total: -1.00 -83.37 335.10 3.69 -79.69 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: 1.04 Total: 9.07 kcal Atomic # 6 Polarization: 9.77 SS G_CDS: 6.05 Total: 15.83 kcal Atomic # 7 Polarization: -99.47 SS G_CDS: -4.59 Total: -104.06 kcal Atomic # 8 Polarization: -46.95 SS G_CDS: -0.84 Total: -47.79 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.26 kcal Total: -83.37 3.69 -79.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133541415.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.318 kcal (2) G-P(sol) polarization free energy of solvation -83.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds