Wall clock time and date at job start Tue Mar 31 2020 00:41:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42905 * 109.46728 * 2 1 4 4 C 1.35995 * 116.99762 * 179.97438 * 3 2 1 5 5 C 1.38706 * 119.98444 * 359.72203 * 4 3 2 6 6 C 1.38113 * 120.02040 * 179.76665 * 5 4 3 7 7 C 1.38858 * 119.97934 * 0.51256 * 6 5 4 8 8 N 1.39936 * 120.02278 * 179.77011 * 7 6 5 9 9 C 1.46492 * 120.00788 * 179.97438 * 8 7 6 10 10 C 1.46508 * 119.99696 * 359.96903 * 8 7 6 11 11 C 1.50703 * 109.46845 * 90.00286 * 10 8 7 12 12 O 1.21293 * 120.00068 * 0.02562 * 11 10 8 13 13 N 1.34777 * 119.99805 * 180.02562 * 11 10 8 14 14 C 1.37093 * 119.99938 * 180.02562 * 13 11 10 15 15 H 1.08001 * 119.99989 * 359.97438 * 14 13 11 16 16 C 1.38954 * 120.00073 * 179.97438 * 14 13 11 17 17 N 1.31407 * 119.99904 * 179.97438 * 16 14 13 18 18 Si 1.86796 * 119.99682 * 359.97438 * 16 14 13 19 19 H 1.48502 * 109.47216 * 90.00444 * 18 16 14 20 20 H 1.48509 * 109.46870 * 209.99801 * 18 16 14 21 21 H 1.48495 * 109.47457 * 329.99796 * 18 16 14 22 22 C 1.38868 * 119.96232 * 359.73953 * 7 6 5 23 23 C 1.38104 * 119.97993 * 0.02562 * 22 7 6 24 24 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47486 * 300.00062 * 1 2 3 26 26 H 1.09001 * 109.47362 * 60.00784 * 1 2 3 27 27 H 1.09000 * 109.47486 * 239.99938 * 2 1 3 28 28 H 1.09001 * 109.47362 * 119.99215 * 2 1 3 29 29 H 1.07993 * 119.98782 * 0.02562 * 5 4 3 30 30 H 1.07999 * 120.00777 * 180.25626 * 6 5 4 31 31 H 1.09001 * 109.47453 * 89.99227 * 9 8 7 32 32 H 1.08996 * 109.47526 * 209.99681 * 9 8 7 33 33 H 1.09003 * 109.47102 * 329.99461 * 9 8 7 34 34 H 1.08999 * 109.47391 * 210.00559 * 10 8 7 35 35 H 1.09007 * 109.46957 * 330.00840 * 10 8 7 36 36 H 0.97005 * 119.99930 * 359.97438 * 13 11 10 37 37 H 0.97003 * 120.00089 * 180.02562 * 17 16 14 38 38 H 1.08001 * 120.00669 * 179.97438 * 22 7 6 39 39 H 1.08002 * 119.98723 * 179.97438 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.3545 1.5256 0.0005 5 6 4.1991 0.4254 0.0069 6 6 5.5685 0.6055 0.0026 7 6 6.0995 1.8885 0.0026 8 7 7.4868 2.0720 0.0031 9 6 8.0467 3.4257 0.0026 10 6 8.3794 0.9102 0.0043 11 6 8.6861 0.5111 -1.4162 12 8 8.2067 1.1358 -2.3387 13 7 9.4930 -0.5402 -1.6615 14 6 9.7724 -0.9030 -2.9537 15 1 9.3456 -0.3467 -3.7751 16 6 10.6048 -1.9865 -3.2066 17 7 10.8722 -2.3346 -4.4452 18 14 11.3437 -2.9482 -1.7858 19 1 10.4292 -4.0561 -1.4094 20 1 12.6565 -3.5079 -2.1966 21 1 11.5328 -2.0453 -0.6221 22 6 5.2532 2.9895 0.0016 23 6 3.8842 2.8075 0.0010 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5137 0.8900 29 1 3.7859 -0.5724 0.0110 30 1 6.2259 -0.2513 0.0033 31 1 8.1851 3.7621 1.0301 32 1 9.0082 3.4211 -0.5107 33 1 7.3635 4.1014 -0.5120 34 1 9.3062 1.1646 0.5184 35 1 7.8946 0.0802 0.5183 36 1 9.8767 -1.0396 -0.9237 37 1 11.4530 -3.0912 -4.6217 38 1 5.6655 3.9877 0.0020 39 1 3.2258 3.6637 0.0006 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000150730691.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:41:14 Heat of formation + Delta-G solvation = -29.986871 kcal Electronic energy + Delta-G solvation = -21182.050946 eV Core-core repulsion = 17897.706365 eV Total energy + Delta-G solvation = -3284.344581 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -40.01740 -38.79806 -37.61096 -35.17350 -33.89180 -31.80960 -31.71782 -30.94843 -28.91577 -28.39197 -25.36147 -24.00860 -23.60907 -21.76206 -20.63872 -19.38216 -18.38512 -18.21357 -16.67963 -16.14095 -16.00722 -15.86447 -14.92997 -14.69065 -14.45550 -13.94568 -13.78886 -13.42142 -13.24034 -13.17263 -13.05346 -12.68047 -12.53091 -12.19680 -12.13459 -11.93955 -11.85374 -11.60367 -11.41748 -11.15112 -10.83386 -10.62777 -10.42352 -10.01182 -9.60001 -9.31694 -8.77528 -8.46309 -8.21035 -6.73213 -6.33605 -3.85149 1.58107 1.89002 2.99566 3.04143 3.12676 3.29686 3.42449 3.68615 4.07382 4.09269 4.69043 4.83422 4.86276 5.04643 5.05357 5.14483 5.17086 5.33754 5.37766 5.47194 5.51975 5.60661 5.66138 5.67361 5.71738 5.82017 5.87481 5.87763 6.01377 6.19538 6.28182 6.50425 6.64216 6.85503 7.43499 7.55851 7.58398 7.81855 8.11566 8.57094 8.92678 9.39373 9.79474 10.79567 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.019149 B = 0.004090 C = 0.003612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.859613 B = 6844.722789 C = 7749.297859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.056 3.944 3 O -0.323 6.323 4 C 0.061 3.939 5 C -0.155 4.155 6 C -0.153 4.153 7 C 0.203 3.797 8 N -0.608 5.608 9 C 0.102 3.898 10 C 0.110 3.890 11 C 0.425 3.575 12 O -0.562 6.562 13 N -0.590 5.590 14 C -0.305 4.305 15 H 0.118 0.882 16 C 0.041 3.959 17 N -0.881 5.881 18 Si 0.880 3.120 19 H -0.270 1.270 20 H -0.276 1.276 21 H -0.269 1.269 22 C -0.161 4.161 23 C -0.104 4.104 24 H 0.074 0.926 25 H 0.063 0.937 26 H 0.064 0.936 27 H 0.059 0.941 28 H 0.057 0.943 29 H 0.123 0.877 30 H 0.123 0.877 31 H 0.044 0.956 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.370 0.630 37 H 0.273 0.727 38 H 0.127 0.873 39 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.254 5.326 14.336 19.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.020 4.020 3 O -0.238 6.238 4 C 0.015 3.985 5 C -0.175 4.175 6 C -0.175 4.175 7 C 0.101 3.899 8 N -0.318 5.318 9 C -0.041 4.041 10 C -0.018 4.018 11 C 0.210 3.790 12 O -0.444 6.444 13 N -0.230 5.230 14 C -0.434 4.434 15 H 0.136 0.864 16 C -0.162 4.162 17 N -0.521 5.521 18 Si 0.706 3.294 19 H -0.196 1.196 20 H -0.202 1.202 21 H -0.195 1.195 22 C -0.184 4.184 23 C -0.123 4.123 24 H 0.093 0.907 25 H 0.082 0.918 26 H 0.084 0.916 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.141 0.859 30 H 0.141 0.859 31 H 0.062 0.938 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.203 0.797 37 H 0.084 0.916 38 H 0.145 0.855 39 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -12.434 5.791 13.552 19.282 hybrid contribution 0.961 -1.273 0.769 1.771 sum -11.473 4.518 14.322 18.898 Atomic orbital electron populations 1.21757 0.93221 1.02536 1.03247 1.22663 0.95403 0.82743 1.01175 1.86007 1.19396 1.28368 1.90070 1.18657 0.81883 0.94003 1.03954 1.20934 0.93517 0.97702 1.05325 1.20487 0.94624 0.95708 1.06723 1.17697 0.83307 0.93463 0.95390 1.45854 1.01547 1.04858 1.79565 1.21542 0.99498 0.83070 1.00021 1.21231 0.94790 0.89756 0.96045 1.20561 0.83837 0.83498 0.91111 1.90579 1.53927 1.54390 1.45471 1.42263 1.44184 1.28406 1.08145 1.19427 1.27547 1.13227 0.83206 0.86415 1.25049 0.97347 0.97170 0.96591 1.69623 1.36638 1.27683 1.18141 0.86671 0.79918 0.80785 0.82007 1.19591 1.20164 1.19454 1.20428 0.91977 0.97671 1.08311 1.20063 0.94240 0.94521 1.03489 0.90681 0.91770 0.91650 0.92283 0.92484 0.85946 0.85920 0.93790 0.91521 0.91583 0.89164 0.89241 0.79723 0.91593 0.85481 0.85706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 10.28 37.16 0.38 -0.83 16 2 C 0.06 0.59 5.46 37.16 0.20 0.79 16 3 O -0.32 -4.46 10.14 -19.72 -0.20 -4.66 16 4 C 0.06 0.90 6.69 -39.24 -0.26 0.64 16 5 C -0.16 -2.33 9.03 -39.45 -0.36 -2.68 16 6 C -0.15 -2.51 9.21 -39.40 -0.36 -2.87 16 7 C 0.20 3.34 6.56 -83.69 -0.55 2.79 16 8 N -0.61 -9.82 2.50 -180.94 -0.45 -10.27 16 9 C 0.10 1.36 10.19 59.84 0.61 1.97 16 10 C 0.11 1.79 5.64 -5.19 -0.03 1.76 16 11 C 0.43 9.54 7.85 -10.98 -0.09 9.45 16 12 O -0.56 -15.22 16.01 5.55 0.09 -15.14 16 13 N -0.59 -13.84 5.09 -10.96 -0.06 -13.90 16 14 C -0.31 -8.61 10.16 -14.93 -0.15 -8.76 16 15 H 0.12 3.84 7.39 -52.49 -0.39 3.45 16 16 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 17 N -0.88 -25.71 13.96 55.50 0.77 -24.94 16 18 Si 0.88 19.11 27.74 -169.99 -4.71 14.40 16 19 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 20 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 21 H -0.27 -5.27 6.52 56.52 0.37 -4.90 16 22 C -0.16 -2.38 9.20 -39.40 -0.36 -2.74 16 23 C -0.10 -1.49 9.98 -39.46 -0.39 -1.88 16 24 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.06 0.62 7.67 -51.93 -0.40 0.22 16 28 H 0.06 0.54 7.65 -51.93 -0.40 0.15 16 29 H 0.12 1.57 6.29 -52.49 -0.33 1.24 16 30 H 0.12 1.98 6.14 -52.49 -0.32 1.66 16 31 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.93 8.07 -51.93 -0.42 0.51 16 33 H 0.07 0.84 6.20 -51.93 -0.32 0.52 16 34 H 0.09 1.22 8.07 -51.93 -0.42 0.80 16 35 H 0.09 1.28 6.20 -51.92 -0.32 0.96 16 36 H 0.37 7.52 5.76 -40.82 -0.24 7.29 16 37 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 38 H 0.13 1.60 6.14 -52.49 -0.32 1.27 16 39 H 0.12 1.53 8.06 -52.49 -0.42 1.10 16 LS Contribution 326.42 15.07 4.92 4.92 Total: -1.00 -34.10 326.42 -6.25 -40.35 By element: Atomic # 1 Polarization: 15.71 SS G_CDS: -5.16 Total: 10.55 kcal Atomic # 6 Polarization: 0.12 SS G_CDS: -1.45 Total: -1.33 kcal Atomic # 7 Polarization: -49.37 SS G_CDS: 0.27 Total: -49.10 kcal Atomic # 8 Polarization: -19.68 SS G_CDS: -0.11 Total: -19.79 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -4.71 Total: 14.40 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -34.10 -6.25 -40.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000150730691.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.368 kcal (2) G-P(sol) polarization free energy of solvation -34.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds