Wall clock time and date at job start Tue Mar 31 2020 00:41:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42905 * 109.46728 * 2 1 4 4 C 1.35995 * 116.99762 * 179.97438 * 3 2 1 5 5 C 1.38706 * 119.98444 * 359.72203 * 4 3 2 6 6 C 1.38113 * 120.02040 * 179.76665 * 5 4 3 7 7 C 1.38858 * 119.97934 * 0.51256 * 6 5 4 8 8 N 1.39936 * 120.02278 * 179.77011 * 7 6 5 9 9 C 1.46492 * 120.00788 * 179.97438 * 8 7 6 10 10 C 1.46508 * 119.99696 * 359.96903 * 8 7 6 11 11 C 1.50703 * 109.46845 * 90.00286 * 10 8 7 12 12 O 1.21293 * 120.00068 * 0.02562 * 11 10 8 13 13 N 1.34777 * 119.99805 * 180.02562 * 11 10 8 14 14 C 1.37093 * 119.99938 * 180.02562 * 13 11 10 15 15 H 1.08001 * 119.99989 * 359.97438 * 14 13 11 16 16 C 1.38954 * 120.00073 * 179.97438 * 14 13 11 17 17 N 1.31407 * 119.99904 * 179.97438 * 16 14 13 18 18 Si 1.86796 * 119.99682 * 359.97438 * 16 14 13 19 19 H 1.48502 * 109.47216 * 90.00444 * 18 16 14 20 20 H 1.48509 * 109.46870 * 209.99801 * 18 16 14 21 21 H 1.48495 * 109.47457 * 329.99796 * 18 16 14 22 22 C 1.38868 * 119.96232 * 359.73953 * 7 6 5 23 23 C 1.38104 * 119.97993 * 0.02562 * 22 7 6 24 24 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47486 * 300.00062 * 1 2 3 26 26 H 1.09001 * 109.47362 * 60.00784 * 1 2 3 27 27 H 1.09000 * 109.47486 * 239.99938 * 2 1 3 28 28 H 1.09001 * 109.47362 * 119.99215 * 2 1 3 29 29 H 1.07993 * 119.98782 * 0.02562 * 5 4 3 30 30 H 1.07999 * 120.00777 * 180.25626 * 6 5 4 31 31 H 1.09001 * 109.47453 * 89.99227 * 9 8 7 32 32 H 1.08996 * 109.47526 * 209.99681 * 9 8 7 33 33 H 1.09003 * 109.47102 * 329.99461 * 9 8 7 34 34 H 1.08999 * 109.47391 * 210.00559 * 10 8 7 35 35 H 1.09007 * 109.46957 * 330.00840 * 10 8 7 36 36 H 0.97005 * 119.99930 * 359.97438 * 13 11 10 37 37 H 0.97003 * 120.00089 * 180.02562 * 17 16 14 38 38 H 1.08001 * 120.00669 * 179.97438 * 22 7 6 39 39 H 1.08002 * 119.98723 * 179.97438 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.3545 1.5256 0.0005 5 6 4.1991 0.4254 0.0069 6 6 5.5685 0.6055 0.0026 7 6 6.0995 1.8885 0.0026 8 7 7.4868 2.0720 0.0031 9 6 8.0467 3.4257 0.0026 10 6 8.3794 0.9102 0.0043 11 6 8.6861 0.5111 -1.4162 12 8 8.2067 1.1358 -2.3387 13 7 9.4930 -0.5402 -1.6615 14 6 9.7724 -0.9030 -2.9537 15 1 9.3456 -0.3467 -3.7751 16 6 10.6048 -1.9865 -3.2066 17 7 10.8722 -2.3346 -4.4452 18 14 11.3437 -2.9482 -1.7858 19 1 10.4292 -4.0561 -1.4094 20 1 12.6565 -3.5079 -2.1966 21 1 11.5328 -2.0453 -0.6221 22 6 5.2532 2.9895 0.0016 23 6 3.8842 2.8075 0.0010 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5137 0.8900 29 1 3.7859 -0.5724 0.0110 30 1 6.2259 -0.2513 0.0033 31 1 8.1851 3.7621 1.0301 32 1 9.0082 3.4211 -0.5107 33 1 7.3635 4.1014 -0.5120 34 1 9.3062 1.1646 0.5184 35 1 7.8946 0.0802 0.5183 36 1 9.8767 -1.0396 -0.9237 37 1 11.4530 -3.0912 -4.6217 38 1 5.6655 3.9877 0.0020 39 1 3.2258 3.6637 0.0006 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000150730691.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:41:12 Heat of formation + Delta-G solvation = -53.550997 kcal Electronic energy + Delta-G solvation = -21183.072763 eV Core-core repulsion = 17897.706365 eV Total energy + Delta-G solvation = -3285.366398 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 5.02 seconds Orbital eigenvalues (eV) -41.17069 -40.33231 -38.94233 -36.45574 -35.80689 -33.77528 -32.66720 -32.07147 -30.18552 -29.56466 -26.99142 -25.41167 -24.59015 -22.90914 -21.82613 -21.20259 -20.23401 -19.30030 -17.89768 -17.79158 -17.15115 -16.92490 -16.69907 -15.92343 -15.71596 -15.37466 -15.24361 -14.91063 -14.50955 -14.41174 -14.17414 -14.05174 -13.86785 -13.57234 -13.12744 -13.05356 -12.94904 -12.89046 -12.68801 -12.43010 -12.34017 -11.99759 -11.72542 -11.53023 -11.49830 -10.75796 -10.26070 -10.04959 -9.90344 -8.42496 -7.92071 -6.03702 0.43259 0.71792 1.29850 1.35515 1.44600 1.93586 2.15477 2.22754 2.44056 2.89422 3.07285 3.13741 3.84079 3.96188 4.09036 4.14435 4.17874 4.23196 4.33196 4.38445 4.42228 4.46189 4.51741 4.66075 4.78824 4.85635 4.94634 4.97377 5.08430 5.17383 5.24790 5.35021 5.49619 5.52744 5.74412 5.92208 6.29761 6.47202 6.59590 6.68916 6.87456 7.38504 7.95729 8.75421 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.019149 B = 0.004090 C = 0.003612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.859613 B = 6844.722789 C = 7749.297859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.045 3.955 3 O -0.334 6.334 4 C 0.053 3.947 5 C -0.163 4.163 6 C -0.174 4.174 7 C 0.180 3.820 8 N -0.616 5.616 9 C 0.097 3.903 10 C 0.120 3.880 11 C 0.427 3.573 12 O -0.616 6.616 13 N -0.589 5.589 14 C -0.329 4.329 15 H 0.050 0.950 16 C -0.016 4.016 17 N -0.936 5.936 18 Si 0.966 3.034 19 H -0.257 1.257 20 H -0.276 1.276 21 H -0.227 1.227 22 C -0.162 4.162 23 C -0.110 4.110 24 H 0.097 0.903 25 H 0.067 0.933 26 H 0.060 0.940 27 H 0.056 0.944 28 H 0.068 0.932 29 H 0.138 0.862 30 H 0.120 0.880 31 H 0.078 0.922 32 H 0.055 0.945 33 H 0.067 0.933 34 H 0.130 0.870 35 H 0.116 0.884 36 H 0.391 0.609 37 H 0.279 0.721 38 H 0.147 0.853 39 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.363 4.949 17.829 22.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.029 4.029 3 O -0.249 6.249 4 C 0.008 3.992 5 C -0.182 4.182 6 C -0.196 4.196 7 C 0.079 3.921 8 N -0.327 5.327 9 C -0.045 4.045 10 C -0.008 4.008 11 C 0.213 3.787 12 O -0.501 6.501 13 N -0.231 5.231 14 C -0.458 4.458 15 H 0.068 0.932 16 C -0.214 4.214 17 N -0.577 5.577 18 Si 0.785 3.215 19 H -0.182 1.182 20 H -0.201 1.201 21 H -0.150 1.150 22 C -0.184 4.184 23 C -0.129 4.129 24 H 0.115 0.885 25 H 0.086 0.914 26 H 0.080 0.920 27 H 0.074 0.926 28 H 0.086 0.914 29 H 0.156 0.844 30 H 0.138 0.862 31 H 0.096 0.904 32 H 0.074 0.926 33 H 0.085 0.915 34 H 0.148 0.852 35 H 0.134 0.866 36 H 0.226 0.774 37 H 0.089 0.911 38 H 0.165 0.835 39 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -12.567 5.439 17.076 21.888 hybrid contribution 0.846 -1.071 -0.435 1.432 sum -11.722 4.368 16.641 20.818 Atomic orbital electron populations 1.21779 0.91283 1.04009 1.03222 1.22954 0.96983 0.81450 1.01555 1.86005 1.18679 1.30357 1.89895 1.18874 0.82531 0.94302 1.03541 1.21128 0.93214 0.98704 1.05134 1.20632 0.95282 0.95865 1.07837 1.17976 0.83868 0.94017 0.96256 1.46058 1.01483 1.05595 1.79577 1.21714 0.98765 0.82039 1.01994 1.21293 0.97010 0.91089 0.91428 1.21939 0.81485 0.81758 0.93486 1.90554 1.55437 1.55879 1.48201 1.42080 1.44989 1.29279 1.06791 1.18975 1.28912 1.13938 0.83982 0.93171 1.26154 0.97037 0.97767 1.00452 1.69812 1.37629 1.28671 1.21545 0.85359 0.78466 0.79291 0.78373 1.18156 1.20104 1.14984 1.20699 0.92047 0.98253 1.07418 1.20385 0.94546 0.95162 1.02827 0.88460 0.91408 0.92043 0.92576 0.91403 0.84427 0.86212 0.90396 0.92621 0.91466 0.85181 0.86616 0.77365 0.91147 0.83531 0.83775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 10.28 71.98 0.74 -1.35 16 2 C 0.05 0.90 5.46 71.98 0.39 1.29 16 3 O -0.33 -8.85 10.14 -93.49 -0.95 -9.79 16 4 C 0.05 1.54 6.69 22.49 0.15 1.69 16 5 C -0.16 -4.75 9.03 22.35 0.20 -4.55 16 6 C -0.17 -5.57 9.21 22.39 0.21 -5.37 16 7 C 0.18 5.72 6.56 38.15 0.25 5.97 16 8 N -0.62 -18.79 2.50 -726.37 -1.82 -20.61 16 9 C 0.10 2.39 10.19 127.77 1.30 3.70 16 10 C 0.12 3.61 5.64 85.63 0.48 4.10 16 11 C 0.43 19.09 7.85 87.66 0.69 19.78 16 12 O -0.62 -34.62 16.01 -3.07 -0.05 -34.67 16 13 N -0.59 -27.44 5.09 -306.98 -1.56 -29.00 16 14 C -0.33 -19.31 10.16 84.04 0.85 -18.45 16 15 H 0.05 3.55 7.39 -2.91 -0.02 3.53 16 16 C -0.02 -0.87 5.50 84.93 0.47 -0.40 16 17 N -0.94 -56.67 13.96 21.66 0.30 -56.37 16 18 Si 0.97 38.25 27.74 68.60 1.90 40.15 16 19 H -0.26 -9.66 7.11 99.48 0.71 -8.95 16 20 H -0.28 -10.90 7.11 99.48 0.71 -10.20 16 21 H -0.23 -7.39 6.52 99.48 0.65 -6.74 16 22 C -0.16 -4.55 9.20 22.39 0.21 -4.34 16 23 C -0.11 -3.01 9.98 22.35 0.22 -2.79 16 24 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 25 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.06 1.13 7.67 -2.39 -0.02 1.11 16 28 H 0.07 1.18 7.65 -2.39 -0.02 1.16 16 29 H 0.14 3.42 6.29 -2.91 -0.02 3.40 16 30 H 0.12 3.77 6.14 -2.91 -0.02 3.75 16 31 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.05 1.48 8.07 -2.39 -0.02 1.46 16 33 H 0.07 1.61 6.20 -2.39 -0.01 1.59 16 34 H 0.13 2.95 8.07 -2.39 -0.02 2.93 16 35 H 0.12 2.94 6.20 -2.38 -0.01 2.93 16 36 H 0.39 14.77 5.76 -92.70 -0.53 14.24 16 37 H 0.28 15.41 8.31 -92.71 -0.77 14.64 16 38 H 0.15 3.39 6.14 -2.91 -0.02 3.38 16 39 H 0.14 3.27 8.06 -2.91 -0.02 3.25 16 Total: -1.00 -79.89 326.42 4.47 -75.42 By element: Atomic # 1 Polarization: 35.13 SS G_CDS: 0.48 Total: 35.61 kcal Atomic # 6 Polarization: -6.90 SS G_CDS: 6.17 Total: -0.73 kcal Atomic # 7 Polarization: -102.90 SS G_CDS: -3.08 Total: -105.98 kcal Atomic # 8 Polarization: -43.47 SS G_CDS: -1.00 Total: -44.46 kcal Atomic # 14 Polarization: 38.25 SS G_CDS: 1.90 Total: 40.15 kcal Total: -79.89 4.47 -75.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000150730691.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.866 kcal (2) G-P(sol) polarization free energy of solvation -79.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.02 seconds