Wall clock time and date at job start Tue Mar 31 2020 00:43:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42902 * 109.47340 * 2 1 4 4 C 1.35972 * 117.00210 * 179.97438 * 3 2 1 5 5 C 1.38722 * 119.98703 * 180.02562 * 4 3 2 6 6 C 1.38088 * 120.01617 * 180.02562 * 5 4 3 7 7 C 1.38834 * 119.98464 * 359.97438 * 6 5 4 8 8 N 1.40160 * 120.01267 * 179.97438 * 7 6 5 9 9 C 1.34770 * 119.99996 * 35.08415 * 8 7 6 10 10 O 1.21596 * 120.00451 * 355.38948 * 9 8 7 11 11 N 1.34777 * 119.99931 * 175.38034 * 9 8 7 12 12 C 1.46500 * 120.00223 * 180.02562 * 11 9 8 13 13 H 1.09005 * 109.47026 * 325.00017 * 12 11 9 14 14 C 1.52996 * 109.47355 * 84.99946 * 12 11 9 15 15 C 1.50694 * 109.47208 * 205.00164 * 12 11 9 16 16 H 1.08004 * 120.00110 * 359.97438 * 15 12 11 17 17 C 1.37884 * 120.00214 * 179.97438 * 15 12 11 18 18 N 1.31518 * 119.99556 * 0.02562 * 17 15 12 19 19 Si 1.86798 * 120.00206 * 179.97438 * 17 15 12 20 20 H 1.48499 * 109.47182 * 180.02562 * 19 17 15 21 21 H 1.48503 * 109.47195 * 300.00068 * 19 17 15 22 22 H 1.48501 * 109.47151 * 60.00204 * 19 17 15 23 23 C 1.38828 * 119.97244 * 0.25188 * 7 6 5 24 24 C 1.38100 * 119.98431 * 359.53544 * 23 7 6 25 25 H 1.09003 * 109.47134 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.46922 * 299.99813 * 1 2 3 27 27 H 1.08997 * 109.46913 * 60.00255 * 1 2 3 28 28 H 1.09003 * 109.47178 * 240.00265 * 2 1 3 29 29 H 1.09005 * 109.47400 * 120.00139 * 2 1 3 30 30 H 1.08000 * 119.98762 * 0.02562 * 5 4 3 31 31 H 1.08001 * 120.00697 * 179.97438 * 6 5 4 32 32 H 0.97000 * 119.99773 * 215.09026 * 8 7 6 33 33 H 0.96994 * 120.00151 * 0.02562 * 11 9 8 34 34 H 1.08999 * 109.47406 * 300.00597 * 14 12 11 35 35 H 1.09005 * 109.46995 * 60.00052 * 14 12 11 36 36 H 1.08996 * 109.47461 * 180.02562 * 14 12 11 37 37 H 0.97000 * 119.99752 * 180.02562 * 18 17 15 38 38 H 1.08000 * 120.00845 * 179.74661 * 23 7 6 39 39 H 1.08001 * 119.98652 * 180.20905 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3544 1.5254 0.0005 5 6 3.8843 2.8074 0.0011 6 6 5.2532 2.9891 0.0011 7 6 6.0992 1.8882 0.0011 8 7 7.4887 2.0719 0.0006 9 6 8.0318 3.1072 0.6710 10 8 7.3131 3.9293 1.2061 11 7 9.3716 3.2314 0.7485 12 6 9.9620 4.3565 1.4777 13 1 9.3369 5.2403 1.3502 14 6 10.0554 4.0080 2.9645 15 6 11.3417 4.6353 0.9396 16 1 11.7393 4.0342 0.1351 17 6 12.0967 5.6577 1.4742 18 7 11.6128 6.3893 2.4542 19 14 13.8072 6.0029 0.8076 20 1 14.4057 7.1434 1.5467 21 1 14.6589 4.7989 0.9824 22 1 13.7173 6.3403 -0.6357 23 6 5.5682 0.6055 -0.0042 24 6 4.1991 0.4252 0.0002 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 3.2260 3.6636 0.0015 31 1 5.6656 3.9872 0.0012 32 1 8.0594 1.4539 -0.4824 33 1 9.9449 2.5758 0.3215 34 1 9.0574 3.8063 3.3538 35 1 10.6805 3.1242 3.0920 36 1 10.4942 4.8452 3.5071 37 1 12.1437 7.1089 2.8300 38 1 6.2258 -0.2512 -0.0084 39 1 3.7860 -0.5727 -0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153149397.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:43:48 Heat of formation + Delta-G solvation = -44.474155 kcal Electronic energy + Delta-G solvation = -20806.952123 eV Core-core repulsion = 17521.979327 eV Total energy + Delta-G solvation = -3284.972797 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.39051 -39.41603 -37.40521 -34.94683 -33.96939 -32.40993 -31.85358 -30.81425 -29.23481 -27.61605 -25.24841 -24.25598 -22.53639 -22.17816 -20.86328 -19.78451 -18.34029 -18.09769 -17.28833 -16.22282 -16.02384 -15.64855 -15.02620 -14.78787 -14.21446 -14.17694 -13.60108 -13.45531 -13.41644 -13.17310 -12.89335 -12.46184 -12.33913 -12.21567 -11.85692 -11.70785 -11.12593 -11.08390 -10.95205 -10.78498 -10.72177 -10.32891 -10.23151 -9.65330 -9.37008 -9.05321 -8.85431 -8.56362 -8.00691 -7.45761 -6.12679 -4.22026 1.43163 1.52502 3.10993 3.24855 3.25774 3.30966 3.34105 3.68571 4.05773 4.32157 4.67057 4.69210 4.87941 4.92114 4.97866 5.01240 5.19713 5.23540 5.41318 5.51369 5.52133 5.74564 5.77068 6.07488 6.09143 6.35563 6.50183 6.70345 6.81499 6.98740 7.11904 7.13462 7.25792 7.45266 7.48129 7.61900 7.84010 8.00676 8.15418 8.73024 8.85663 9.25251 9.46547 10.93322 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.056028 B = 0.002860 C = 0.002817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.626940 B = 9788.133169 C = 9938.842119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.055 3.945 3 O -0.319 6.319 4 C 0.101 3.899 5 C -0.132 4.132 6 C -0.081 4.081 7 C 0.145 3.855 8 N -0.696 5.696 9 C 0.693 3.307 10 O -0.583 6.583 11 N -0.720 5.720 12 C 0.281 3.719 13 H 0.050 0.950 14 C -0.148 4.148 15 C -0.534 4.534 16 H 0.060 0.940 17 C 0.066 3.934 18 N -0.883 5.883 19 Si 0.903 3.097 20 H -0.286 1.286 21 H -0.276 1.276 22 H -0.276 1.276 23 C -0.117 4.117 24 C -0.191 4.191 25 H 0.075 0.925 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.131 0.869 31 H 0.151 0.849 32 H 0.401 0.599 33 H 0.386 0.614 34 H 0.015 0.985 35 H 0.025 0.975 36 H 0.090 0.910 37 H 0.265 0.735 38 H 0.125 0.875 39 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.232 -14.191 -6.163 21.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.234 6.234 4 C 0.056 3.944 5 C -0.151 4.151 6 C -0.101 4.101 7 C 0.049 3.951 8 N -0.345 5.345 9 C 0.393 3.607 10 O -0.461 6.461 11 N -0.371 5.371 12 C 0.179 3.821 13 H 0.067 0.933 14 C -0.207 4.207 15 C -0.573 4.573 16 H 0.079 0.921 17 C -0.137 4.137 18 N -0.520 5.520 19 Si 0.731 3.269 20 H -0.211 1.211 21 H -0.202 1.202 22 H -0.202 1.202 23 C -0.138 4.138 24 C -0.210 4.210 25 H 0.094 0.906 26 H 0.085 0.915 27 H 0.084 0.916 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.149 0.851 31 H 0.169 0.831 32 H 0.236 0.764 33 H 0.218 0.782 34 H 0.034 0.966 35 H 0.045 0.955 36 H 0.109 0.891 37 H 0.075 0.925 38 H 0.143 0.857 39 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -15.869 -13.056 -5.485 21.269 hybrid contribution 1.660 -0.767 -0.679 1.950 sum -14.209 -13.822 -6.163 20.759 Atomic orbital electron populations 1.21768 0.93006 1.02637 1.03491 1.22715 0.95650 0.82481 1.01195 1.86065 1.19316 1.28718 1.89277 1.18917 0.81968 0.94166 0.99379 1.20359 0.94794 0.94689 1.05236 1.21297 0.91436 1.00133 0.97261 1.17476 0.82665 0.93197 1.01766 1.42798 1.05104 1.31499 1.55063 1.16168 0.83671 0.81426 0.79440 1.90865 1.60260 1.42926 1.52063 1.45860 1.02936 1.31084 1.57172 1.18673 0.92691 0.83017 0.87737 0.93250 1.22104 0.97577 1.01473 0.99528 1.21169 0.99795 1.16957 1.19380 0.92140 1.24888 0.98491 0.95550 0.94800 1.69898 1.37558 1.19851 1.24701 0.86486 0.83589 0.77858 0.79005 1.21120 1.20192 1.20183 1.20631 0.94687 0.95485 1.03021 1.20896 0.93462 0.97781 1.08845 0.90577 0.91543 0.91594 0.92268 0.92228 0.85139 0.83128 0.76417 0.78197 0.96567 0.95547 0.89102 0.92478 0.85725 0.85627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 10.28 37.16 0.38 -0.59 16 2 C 0.05 0.46 5.46 37.16 0.20 0.66 16 3 O -0.32 -3.90 10.14 -19.65 -0.20 -4.10 16 4 C 0.10 1.35 6.69 -39.23 -0.26 1.09 16 5 C -0.13 -1.91 9.98 -39.46 -0.39 -2.31 16 6 C -0.08 -1.33 8.69 -39.42 -0.34 -1.67 16 7 C 0.14 2.23 6.30 -83.61 -0.53 1.70 16 8 N -0.70 -10.82 5.35 -14.19 -0.08 -10.89 16 9 C 0.69 14.10 8.37 -86.92 -0.73 13.38 16 10 O -0.58 -14.09 13.44 5.28 0.07 -14.02 16 11 N -0.72 -14.93 5.07 -59.82 -0.30 -15.24 16 12 C 0.28 7.14 2.56 -69.09 -0.18 6.97 16 13 H 0.05 1.45 7.58 -51.93 -0.39 1.06 16 14 C -0.15 -3.72 9.26 37.16 0.34 -3.37 16 15 C -0.53 -14.07 8.73 -34.44 -0.30 -14.37 16 16 H 0.06 1.51 7.74 -52.48 -0.41 1.10 16 17 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 18 N -0.88 -24.82 11.32 55.43 0.63 -24.20 16 19 Si 0.90 20.54 29.54 -169.99 -5.02 15.52 16 20 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 21 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 22 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 23 C -0.12 -1.47 9.96 -39.41 -0.39 -1.86 16 24 C -0.19 -2.26 9.03 -39.46 -0.36 -2.62 16 25 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.43 7.66 -51.93 -0.40 0.03 16 29 H 0.06 0.46 7.66 -51.93 -0.40 0.06 16 30 H 0.13 1.72 8.06 -52.49 -0.42 1.29 16 31 H 0.15 2.80 6.22 -52.49 -0.33 2.48 16 32 H 0.40 4.76 8.84 -40.82 -0.36 4.40 16 33 H 0.39 6.79 8.56 -40.82 -0.35 6.44 16 34 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.09 2.47 6.07 -51.93 -0.32 2.15 16 37 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 38 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 39 H 0.13 1.15 6.29 -52.49 -0.33 0.82 16 LS Contribution 328.54 15.07 4.95 4.95 Total: -1.00 -31.53 328.54 -7.97 -39.49 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: -5.37 Total: 9.82 kcal Atomic # 6 Polarization: 1.31 SS G_CDS: -2.65 Total: -1.33 kcal Atomic # 7 Polarization: -50.58 SS G_CDS: 0.25 Total: -50.33 kcal Atomic # 8 Polarization: -17.99 SS G_CDS: -0.13 Total: -18.12 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -31.53 -7.97 -39.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153149397.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.979 kcal (2) G-P(sol) polarization free energy of solvation -31.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds