Wall clock time and date at job start Tue Mar 31 2020 00:43:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42902 * 109.47340 * 2 1 4 4 C 1.35972 * 117.00210 * 179.97438 * 3 2 1 5 5 C 1.38722 * 119.98703 * 180.02562 * 4 3 2 6 6 C 1.38088 * 120.01617 * 180.02562 * 5 4 3 7 7 C 1.38834 * 119.98464 * 359.97438 * 6 5 4 8 8 N 1.40160 * 120.01267 * 179.97438 * 7 6 5 9 9 C 1.34770 * 119.99996 * 35.08415 * 8 7 6 10 10 O 1.21596 * 120.00451 * 355.38948 * 9 8 7 11 11 N 1.34777 * 119.99931 * 175.38034 * 9 8 7 12 12 C 1.46500 * 120.00223 * 180.02562 * 11 9 8 13 13 H 1.09005 * 109.47026 * 325.00017 * 12 11 9 14 14 C 1.52996 * 109.47355 * 84.99946 * 12 11 9 15 15 C 1.50694 * 109.47208 * 205.00164 * 12 11 9 16 16 H 1.08004 * 120.00110 * 359.97438 * 15 12 11 17 17 C 1.37884 * 120.00214 * 179.97438 * 15 12 11 18 18 N 1.31518 * 119.99556 * 0.02562 * 17 15 12 19 19 Si 1.86798 * 120.00206 * 179.97438 * 17 15 12 20 20 H 1.48499 * 109.47182 * 180.02562 * 19 17 15 21 21 H 1.48503 * 109.47195 * 300.00068 * 19 17 15 22 22 H 1.48501 * 109.47151 * 60.00204 * 19 17 15 23 23 C 1.38828 * 119.97244 * 0.25188 * 7 6 5 24 24 C 1.38100 * 119.98431 * 359.53544 * 23 7 6 25 25 H 1.09003 * 109.47134 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.46922 * 299.99813 * 1 2 3 27 27 H 1.08997 * 109.46913 * 60.00255 * 1 2 3 28 28 H 1.09003 * 109.47178 * 240.00265 * 2 1 3 29 29 H 1.09005 * 109.47400 * 120.00139 * 2 1 3 30 30 H 1.08000 * 119.98762 * 0.02562 * 5 4 3 31 31 H 1.08001 * 120.00697 * 179.97438 * 6 5 4 32 32 H 0.97000 * 119.99773 * 215.09026 * 8 7 6 33 33 H 0.96994 * 120.00151 * 0.02562 * 11 9 8 34 34 H 1.08999 * 109.47406 * 300.00597 * 14 12 11 35 35 H 1.09005 * 109.46995 * 60.00052 * 14 12 11 36 36 H 1.08996 * 109.47461 * 180.02562 * 14 12 11 37 37 H 0.97000 * 119.99752 * 180.02562 * 18 17 15 38 38 H 1.08000 * 120.00845 * 179.74661 * 23 7 6 39 39 H 1.08001 * 119.98652 * 180.20905 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3544 1.5254 0.0005 5 6 3.8843 2.8074 0.0011 6 6 5.2532 2.9891 0.0011 7 6 6.0992 1.8882 0.0011 8 7 7.4887 2.0719 0.0006 9 6 8.0318 3.1072 0.6710 10 8 7.3131 3.9293 1.2061 11 7 9.3716 3.2314 0.7485 12 6 9.9620 4.3565 1.4777 13 1 9.3369 5.2403 1.3502 14 6 10.0554 4.0080 2.9645 15 6 11.3417 4.6353 0.9396 16 1 11.7393 4.0342 0.1351 17 6 12.0967 5.6577 1.4742 18 7 11.6128 6.3893 2.4542 19 14 13.8072 6.0029 0.8076 20 1 14.4057 7.1434 1.5467 21 1 14.6589 4.7989 0.9824 22 1 13.7173 6.3403 -0.6357 23 6 5.5682 0.6055 -0.0042 24 6 4.1991 0.4252 0.0002 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 3.2260 3.6636 0.0015 31 1 5.6656 3.9872 0.0012 32 1 8.0594 1.4539 -0.4824 33 1 9.9449 2.5758 0.3215 34 1 9.0574 3.8063 3.3538 35 1 10.6805 3.1242 3.0920 36 1 10.4942 4.8452 3.5071 37 1 12.1437 7.1089 2.8300 38 1 6.2258 -0.2512 -0.0084 39 1 3.7860 -0.5727 -0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153149397.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:43:47 Heat of formation + Delta-G solvation = -65.660776 kcal Electronic energy + Delta-G solvation = -20807.870844 eV Core-core repulsion = 17521.979327 eV Total energy + Delta-G solvation = -3285.891518 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.64819 -40.65876 -38.59391 -36.74508 -35.39512 -34.27419 -32.63586 -31.84286 -30.95674 -28.92800 -27.32284 -25.11521 -23.92055 -23.21168 -22.32617 -21.45539 -19.78187 -19.22776 -18.62521 -17.81849 -16.97750 -16.88026 -16.76950 -16.19660 -15.91402 -15.42663 -14.98630 -14.57883 -14.46121 -14.31108 -14.20482 -13.82416 -13.70851 -13.17775 -13.15436 -12.98153 -12.83617 -12.71064 -12.63415 -12.25844 -12.14145 -11.87692 -11.68208 -11.14872 -11.10319 -10.77165 -10.58868 -9.96183 -9.79662 -8.62690 -8.16435 -6.33969 0.36718 0.40113 1.46168 1.48613 1.56242 1.80120 2.18974 2.32898 2.43490 2.85249 3.13955 3.47444 3.85816 3.95973 4.12128 4.19670 4.31961 4.43301 4.43940 4.64130 4.71691 4.78396 4.93744 4.98954 5.01987 5.07115 5.10520 5.23246 5.33375 5.35699 5.43804 5.53649 5.61483 5.68034 5.86357 5.94114 6.10178 6.29622 6.52087 6.73733 7.26506 7.35010 7.70556 8.89860 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.056028 B = 0.002860 C = 0.002817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.626940 B = 9788.133169 C = 9938.842119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.043 3.957 3 O -0.335 6.335 4 C 0.104 3.896 5 C -0.148 4.148 6 C -0.103 4.103 7 C 0.116 3.884 8 N -0.674 5.674 9 C 0.691 3.309 10 O -0.627 6.627 11 N -0.714 5.714 12 C 0.289 3.711 13 H -0.001 1.001 14 C -0.134 4.134 15 C -0.546 4.546 16 H 0.075 0.925 17 C 0.013 3.987 18 N -0.918 5.918 19 Si 0.975 3.025 20 H -0.287 1.287 21 H -0.263 1.263 22 H -0.271 1.271 23 C -0.100 4.100 24 C -0.182 4.182 25 H 0.101 0.899 26 H 0.059 0.941 27 H 0.061 0.939 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.131 0.869 31 H 0.116 0.884 32 H 0.421 0.579 33 H 0.404 0.596 34 H 0.009 0.991 35 H 0.041 0.959 36 H 0.067 0.933 37 H 0.266 0.734 38 H 0.160 0.840 39 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.123 -17.470 -7.305 24.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.032 4.032 3 O -0.250 6.250 4 C 0.058 3.942 5 C -0.167 4.167 6 C -0.124 4.124 7 C 0.021 3.979 8 N -0.324 5.324 9 C 0.391 3.609 10 O -0.508 6.508 11 N -0.367 5.367 12 C 0.185 3.815 13 H 0.017 0.983 14 C -0.193 4.193 15 C -0.585 4.585 16 H 0.093 0.907 17 C -0.187 4.187 18 N -0.556 5.556 19 Si 0.799 3.201 20 H -0.213 1.213 21 H -0.188 1.188 22 H -0.196 1.196 23 C -0.120 4.120 24 C -0.201 4.201 25 H 0.120 0.880 26 H 0.078 0.922 27 H 0.081 0.919 28 H 0.094 0.906 29 H 0.089 0.911 30 H 0.149 0.851 31 H 0.134 0.866 32 H 0.260 0.740 33 H 0.239 0.761 34 H 0.028 0.972 35 H 0.060 0.940 36 H 0.086 0.914 37 H 0.075 0.925 38 H 0.178 0.822 39 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -15.780 -16.415 -6.674 23.728 hybrid contribution 1.419 0.184 -0.341 1.471 sum -14.361 -16.232 -7.015 22.779 Atomic orbital electron populations 1.21810 0.91743 1.04163 1.02999 1.23096 0.96761 0.80777 1.02521 1.86069 1.18504 1.31462 1.88922 1.18998 0.82964 0.93968 0.98265 1.20374 0.94157 0.96001 1.06155 1.21088 0.92653 0.99242 0.99412 1.17696 0.82029 0.94229 1.03900 1.42399 1.05666 1.30267 1.54058 1.16286 0.83157 0.81972 0.79448 1.90849 1.61168 1.44866 1.53933 1.45429 1.03497 1.30497 1.57261 1.18243 0.91943 0.82846 0.88473 0.98344 1.21921 0.97187 1.01024 0.99153 1.21500 0.99936 1.17306 1.19710 0.90679 1.25824 1.02634 0.95287 0.94959 1.70056 1.39143 1.20372 1.26013 0.85356 0.78561 0.77896 0.78250 1.21288 1.18772 1.19606 1.20958 0.95503 0.94976 1.00608 1.21300 0.92947 0.98940 1.06904 0.88006 0.92228 0.91949 0.90577 0.91058 0.85094 0.86585 0.74031 0.76082 0.97160 0.94020 0.91405 0.92527 0.82210 0.81940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 10.28 71.98 0.74 -0.81 16 2 C 0.04 0.59 5.46 71.98 0.39 0.98 16 3 O -0.33 -7.61 10.14 -93.23 -0.95 -8.55 16 4 C 0.10 2.62 6.69 22.50 0.15 2.77 16 5 C -0.15 -4.41 9.98 22.35 0.22 -4.19 16 6 C -0.10 -3.55 8.69 22.38 0.19 -3.35 16 7 C 0.12 3.49 6.30 38.09 0.24 3.73 16 8 N -0.67 -20.45 5.35 -317.06 -1.70 -22.14 16 9 C 0.69 28.72 8.37 179.06 1.50 30.22 16 10 O -0.63 -31.99 13.44 -4.02 -0.05 -32.04 16 11 N -0.71 -29.82 5.07 -461.42 -2.34 -32.16 16 12 C 0.29 15.12 2.56 44.24 0.11 15.23 16 13 H 0.00 -0.08 7.58 -2.38 -0.02 -0.10 16 14 C -0.13 -6.89 9.26 71.98 0.67 -6.23 16 15 C -0.55 -28.80 8.73 25.60 0.22 -28.57 16 16 H 0.08 3.65 7.74 -2.91 -0.02 3.63 16 17 C 0.01 0.70 5.30 84.66 0.45 1.15 16 18 N -0.92 -52.85 11.32 21.45 0.24 -52.61 16 19 Si 0.97 41.82 29.54 68.60 2.03 43.84 16 20 H -0.29 -12.29 7.11 99.48 0.71 -11.59 16 21 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 22 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 23 C -0.10 -2.19 9.96 22.38 0.22 -1.97 16 24 C -0.18 -3.70 9.03 22.35 0.20 -3.50 16 25 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 26 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.08 0.80 7.66 -2.39 -0.02 0.78 16 29 H 0.07 0.82 7.66 -2.38 -0.02 0.80 16 30 H 0.13 3.69 8.06 -2.91 -0.02 3.67 16 31 H 0.12 4.75 6.22 -2.91 -0.02 4.73 16 32 H 0.42 9.10 8.84 -92.71 -0.82 8.28 16 33 H 0.40 13.74 8.56 -92.71 -0.79 12.95 16 34 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 35 H 0.04 1.95 8.14 -2.38 -0.02 1.93 16 36 H 0.07 3.81 6.07 -2.39 -0.01 3.79 16 37 H 0.27 14.50 8.31 -92.71 -0.77 13.73 16 38 H 0.16 2.38 8.06 -2.91 -0.02 2.36 16 39 H 0.16 2.10 6.29 -2.91 -0.02 2.08 16 Total: -1.00 -71.39 328.54 2.02 -69.38 By element: Atomic # 1 Polarization: 29.36 SS G_CDS: -0.53 Total: 28.83 kcal Atomic # 6 Polarization: 0.14 SS G_CDS: 5.32 Total: 5.46 kcal Atomic # 7 Polarization: -103.11 SS G_CDS: -3.79 Total: -106.91 kcal Atomic # 8 Polarization: -39.60 SS G_CDS: -1.00 Total: -40.60 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 2.03 Total: 43.84 kcal Total: -71.39 2.02 -69.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153149397.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.718 kcal (2) G-P(sol) polarization free energy of solvation -71.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds