Wall clock time and date at job start Tue Mar 31 2020 00:30:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46905 * 109.47048 * 2 1 4 4 C 1.46890 * 110.99712 * 197.80521 * 3 2 1 5 5 C 1.50699 * 109.47357 * 69.48701 * 4 3 2 6 6 H 1.08009 * 119.99912 * 359.97438 * 5 4 3 7 7 C 1.37876 * 120.00151 * 179.71877 * 5 4 3 8 8 N 1.31512 * 120.00257 * 0.02562 * 7 5 4 9 9 Si 1.86807 * 119.99695 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47326 * 90.00680 * 9 7 5 11 11 H 1.48502 * 109.46941 * 210.00199 * 9 7 5 12 12 H 1.48501 * 109.47140 * 329.99885 * 9 7 5 13 13 C 1.46902 * 110.99625 * 73.85511 * 3 2 1 14 14 H 1.08995 * 109.47807 * 50.72769 * 13 3 2 15 15 C 1.50701 * 109.47083 * 290.72166 * 13 3 2 16 16 O 1.20829 * 120.00419 * 324.34801 * 15 13 3 17 17 O 1.34233 * 120.00004 * 144.34082 * 15 13 3 18 18 C 1.45195 * 116.99979 * 180.02562 * 17 15 13 19 19 C 1.50703 * 109.46689 * 170.73192 * 13 3 2 20 20 C 1.38673 * 120.41217 * 235.03017 * 19 13 3 21 21 C 1.38631 * 118.41715 * 179.97438 * 20 19 13 22 22 C 1.38221 * 119.16453 * 0.02562 * 21 20 19 23 23 N 1.31854 * 120.75987 * 359.97438 * 22 21 20 24 24 C 1.31881 * 121.72982 * 359.70440 * 23 22 21 25 25 H 1.08997 * 109.46585 * 169.49202 * 1 2 3 26 26 H 1.08999 * 109.47178 * 289.49353 * 1 2 3 27 27 H 1.08998 * 109.47049 * 49.49475 * 1 2 3 28 28 H 1.08991 * 109.47018 * 239.99963 * 2 1 3 29 29 H 1.08997 * 109.46905 * 119.99931 * 2 1 3 30 30 H 1.08995 * 109.47774 * 309.48546 * 4 3 2 31 31 H 1.09008 * 109.46893 * 189.48174 * 4 3 2 32 32 H 0.97001 * 120.00283 * 179.97438 * 8 7 5 33 33 H 1.09004 * 109.47240 * 60.00488 * 18 17 15 34 34 H 1.09005 * 109.47154 * 180.02562 * 18 17 15 35 35 H 1.09004 * 109.47612 * 300.00149 * 18 17 15 36 36 H 1.08001 * 120.79413 * 359.97438 * 20 19 13 37 37 H 1.08010 * 120.41540 * 180.02562 * 21 20 19 38 38 H 1.07997 * 119.62267 * 179.97438 * 22 21 20 39 39 H 1.07996 * 119.62257 * 180.30907 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4262 1.4461 -0.4193 5 6 3.5288 1.1077 -1.8843 6 1 2.6382 0.8706 -2.4474 7 6 4.7589 1.1060 -2.5069 8 7 5.8429 1.3992 -1.8223 9 14 4.8859 0.6873 -4.3230 10 1 4.7580 1.9289 -5.1274 11 1 6.2020 0.0551 -4.5944 12 1 3.7988 -0.2552 -4.6909 13 6 1.8356 2.0084 1.3174 14 1 2.2470 1.3570 2.0884 15 6 0.3655 2.2213 1.5714 16 8 -0.3685 2.5186 0.6588 17 8 -0.1287 2.0804 2.8115 18 6 -1.5537 2.3000 2.9820 19 6 2.5480 3.3361 1.3488 20 6 3.4862 3.6062 2.3336 21 6 4.1171 4.8406 2.3230 22 6 3.7920 5.7547 1.3385 23 7 2.8945 5.4634 0.4175 24 6 2.2793 4.2972 0.3931 25 1 -0.3632 -1.0104 -0.1874 26 1 -0.3633 0.3429 0.9687 27 1 -0.3633 0.6675 -0.7814 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 4.0096 0.7309 0.1604 31 1 3.8123 2.4515 -0.2508 32 1 6.7084 1.3976 -2.2603 33 1 -2.1069 1.5925 2.3643 34 1 -1.8210 2.1551 4.0288 35 1 -1.8032 3.3176 2.6812 36 1 3.7199 2.8724 3.0908 37 1 4.8534 5.0848 3.0745 38 1 4.2786 6.7187 1.3235 39 1 1.5534 4.0927 -0.3800 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000154253986.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:30:51 Heat of formation + Delta-G solvation = -32.336037 kcal Electronic energy + Delta-G solvation = -22623.091335 eV Core-core repulsion = 19338.644886 eV Total energy + Delta-G solvation = -3284.446448 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.76526 -39.56731 -37.21329 -35.85641 -32.95459 -32.53054 -31.53852 -29.64209 -28.65282 -27.14304 -25.21884 -23.26065 -22.88120 -22.12241 -21.18272 -19.61599 -17.56174 -16.95209 -16.72974 -16.39772 -16.05808 -15.68754 -15.03286 -14.57281 -14.22440 -13.94994 -13.65498 -13.35156 -12.90688 -12.86635 -12.80205 -12.73626 -12.29722 -12.06501 -11.80373 -11.57122 -11.21469 -10.97750 -10.74081 -10.60921 -10.54558 -10.27332 -10.14925 -9.93607 -9.42948 -9.30236 -9.08717 -8.64103 -8.38873 -7.49100 -6.05696 -4.06773 1.38830 1.62661 2.50505 2.83810 3.32569 3.38628 3.42047 4.12574 4.40871 4.66189 4.77877 5.05022 5.10546 5.11156 5.13060 5.19951 5.29888 5.33028 5.33935 5.51934 5.58219 5.61008 5.82427 5.88296 6.03895 6.14572 6.19903 6.37112 6.51149 6.55105 6.62308 6.79994 7.03812 7.12315 7.19818 7.69863 7.89018 8.04302 8.10536 8.35271 8.40893 9.00019 9.57172 11.04994 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.014677 B = 0.007305 C = 0.005424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1907.319676 B = 3831.888306 C = 5161.047753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.052 3.948 3 N -0.512 5.512 4 C 0.194 3.806 5 C -0.507 4.507 6 H 0.066 0.934 7 C 0.058 3.942 8 N -0.897 5.897 9 Si 0.898 3.102 10 H -0.280 1.280 11 H -0.288 1.288 12 H -0.273 1.273 13 C 0.141 3.859 14 H 0.069 0.931 15 C 0.471 3.529 16 O -0.479 6.479 17 O -0.367 6.367 18 C 0.036 3.964 19 C -0.125 4.125 20 C -0.060 4.060 21 C -0.178 4.178 22 C 0.098 3.902 23 N -0.487 5.487 24 C 0.146 3.854 25 H 0.047 0.953 26 H 0.034 0.966 27 H 0.074 0.926 28 H 0.095 0.905 29 H 0.024 0.976 30 H -0.006 1.006 31 H 0.041 0.959 32 H 0.261 0.739 33 H 0.061 0.939 34 H 0.096 0.904 35 H 0.060 0.940 36 H 0.133 0.867 37 H 0.133 0.867 38 H 0.152 0.848 39 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.138 2.384 11.845 14.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.076 4.076 3 N -0.239 5.239 4 C 0.070 3.930 5 C -0.545 4.545 6 H 0.084 0.916 7 C -0.144 4.144 8 N -0.536 5.536 9 Si 0.726 3.274 10 H -0.206 1.206 11 H -0.214 1.214 12 H -0.198 1.198 13 C 0.031 3.969 14 H 0.087 0.913 15 C 0.312 3.688 16 O -0.363 6.363 17 O -0.284 6.284 18 C -0.058 4.058 19 C -0.128 4.128 20 C -0.087 4.087 21 C -0.198 4.198 22 C -0.059 4.059 23 N -0.195 5.195 24 C -0.011 4.011 25 H 0.066 0.934 26 H 0.053 0.947 27 H 0.093 0.907 28 H 0.114 0.886 29 H 0.042 0.958 30 H 0.012 0.988 31 H 0.058 0.942 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.115 0.885 35 H 0.079 0.921 36 H 0.150 0.850 37 H 0.151 0.849 38 H 0.169 0.831 39 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -8.676 3.383 10.565 14.084 hybrid contribution 0.805 -1.355 0.268 1.599 sum -7.871 2.028 10.834 13.544 Atomic orbital electron populations 1.22082 0.96259 1.00902 1.01256 1.22131 0.94532 0.89231 1.01695 1.62128 1.25339 1.16973 1.19438 1.19867 0.79453 0.97515 0.96117 1.21088 0.93086 1.46544 0.93821 0.91605 1.24955 0.95630 0.95402 0.98386 1.69952 0.98347 1.49042 1.36245 0.86487 0.77236 0.78628 0.85026 1.20560 1.21354 1.19787 1.19936 0.86994 0.94485 0.95527 0.91341 1.23548 0.91502 0.73508 0.80234 1.90648 1.59839 1.41815 1.43990 1.86523 1.26883 1.82091 1.32900 1.23190 0.78100 1.01936 1.02554 1.20218 0.99220 0.95609 0.97733 1.21414 0.93590 0.96681 0.96980 1.21987 1.01775 0.94869 1.01184 1.22755 0.93697 0.99223 0.90226 1.67770 1.07928 1.20388 1.23437 1.22776 0.95854 0.87202 0.95277 0.93359 0.94717 0.90691 0.88646 0.95811 0.98833 0.94150 0.92901 0.92014 0.88524 0.92100 0.84956 0.84947 0.83118 0.81799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.49 8.41 37.16 0.31 -2.18 16 2 C 0.05 1.00 5.53 -3.82 -0.02 0.98 16 3 N -0.51 -10.84 3.94 -230.88 -0.91 -11.75 16 4 C 0.19 4.88 4.37 -4.98 -0.02 4.86 16 5 C -0.51 -13.98 8.31 -34.44 -0.29 -14.26 16 6 H 0.07 1.82 7.52 -52.48 -0.39 1.42 16 7 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 8 N -0.90 -26.29 13.29 55.43 0.74 -25.55 16 9 Si 0.90 21.69 29.54 -169.99 -5.02 16.67 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 13 C 0.14 2.58 2.22 -70.01 -0.16 2.42 16 14 H 0.07 1.16 7.70 -51.93 -0.40 0.76 16 15 C 0.47 8.10 4.02 36.01 0.14 8.24 16 16 O -0.48 -9.09 14.02 -18.75 -0.26 -9.36 16 17 O -0.37 -5.38 10.55 -39.27 -0.41 -5.79 16 18 C 0.04 0.39 10.55 101.05 1.07 1.46 16 19 C -0.13 -2.29 3.06 -104.48 -0.32 -2.61 16 20 C -0.06 -0.95 9.81 -39.28 -0.39 -1.33 16 21 C -0.18 -2.55 10.11 -39.44 -0.40 -2.95 16 22 C 0.10 1.53 11.18 -17.55 -0.20 1.33 16 23 N -0.49 -9.24 10.36 -13.26 -0.14 -9.38 16 24 C 0.15 2.89 9.52 -17.55 -0.17 2.72 16 25 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.03 0.56 5.37 -51.93 -0.28 0.28 16 27 H 0.07 1.40 7.44 -51.93 -0.39 1.02 16 28 H 0.10 1.98 6.85 -51.93 -0.36 1.62 16 29 H 0.02 0.43 7.86 -51.93 -0.41 0.02 16 30 H -0.01 -0.16 8.08 -51.93 -0.42 -0.58 16 31 H 0.04 1.09 5.67 -51.92 -0.29 0.80 16 32 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 33 H 0.06 0.66 8.13 -51.93 -0.42 0.24 16 34 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.06 0.66 8.13 -51.93 -0.42 0.24 16 36 H 0.13 1.74 8.01 -52.49 -0.42 1.32 16 37 H 0.13 1.43 8.06 -52.48 -0.42 1.01 16 38 H 0.15 1.84 8.06 -52.49 -0.42 1.42 16 39 H 0.16 3.45 7.94 -52.49 -0.42 3.03 16 LS Contribution 325.00 15.07 4.90 4.90 Total: -1.00 -31.72 325.00 -7.08 -38.80 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: -5.45 Total: 1.25 kcal Atomic # 6 Polarization: 0.74 SS G_CDS: -0.53 Total: 0.21 kcal Atomic # 7 Polarization: -46.36 SS G_CDS: -0.31 Total: -46.67 kcal Atomic # 8 Polarization: -14.47 SS G_CDS: -0.68 Total: -15.15 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -31.72 -7.08 -38.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000154253986.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.464 kcal (2) G-P(sol) polarization free energy of solvation -31.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds