Wall clock time and date at job start Tue Mar 31 2020 00:30:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46905 * 109.47048 * 2 1 4 4 C 1.46890 * 110.99712 * 197.80521 * 3 2 1 5 5 C 1.50699 * 109.47357 * 69.48701 * 4 3 2 6 6 H 1.08009 * 119.99912 * 359.97438 * 5 4 3 7 7 C 1.37876 * 120.00151 * 179.71877 * 5 4 3 8 8 N 1.31512 * 120.00257 * 0.02562 * 7 5 4 9 9 Si 1.86807 * 119.99695 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47326 * 90.00680 * 9 7 5 11 11 H 1.48502 * 109.46941 * 210.00199 * 9 7 5 12 12 H 1.48501 * 109.47140 * 329.99885 * 9 7 5 13 13 C 1.46902 * 110.99625 * 73.85511 * 3 2 1 14 14 H 1.08995 * 109.47807 * 50.72769 * 13 3 2 15 15 C 1.50701 * 109.47083 * 290.72166 * 13 3 2 16 16 O 1.20829 * 120.00419 * 324.34801 * 15 13 3 17 17 O 1.34233 * 120.00004 * 144.34082 * 15 13 3 18 18 C 1.45195 * 116.99979 * 180.02562 * 17 15 13 19 19 C 1.50703 * 109.46689 * 170.73192 * 13 3 2 20 20 C 1.38673 * 120.41217 * 235.03017 * 19 13 3 21 21 C 1.38631 * 118.41715 * 179.97438 * 20 19 13 22 22 C 1.38221 * 119.16453 * 0.02562 * 21 20 19 23 23 N 1.31854 * 120.75987 * 359.97438 * 22 21 20 24 24 C 1.31881 * 121.72982 * 359.70440 * 23 22 21 25 25 H 1.08997 * 109.46585 * 169.49202 * 1 2 3 26 26 H 1.08999 * 109.47178 * 289.49353 * 1 2 3 27 27 H 1.08998 * 109.47049 * 49.49475 * 1 2 3 28 28 H 1.08991 * 109.47018 * 239.99963 * 2 1 3 29 29 H 1.08997 * 109.46905 * 119.99931 * 2 1 3 30 30 H 1.08995 * 109.47774 * 309.48546 * 4 3 2 31 31 H 1.09008 * 109.46893 * 189.48174 * 4 3 2 32 32 H 0.97001 * 120.00283 * 179.97438 * 8 7 5 33 33 H 1.09004 * 109.47240 * 60.00488 * 18 17 15 34 34 H 1.09005 * 109.47154 * 180.02562 * 18 17 15 35 35 H 1.09004 * 109.47612 * 300.00149 * 18 17 15 36 36 H 1.08001 * 120.79413 * 359.97438 * 20 19 13 37 37 H 1.08010 * 120.41540 * 180.02562 * 21 20 19 38 38 H 1.07997 * 119.62267 * 179.97438 * 22 21 20 39 39 H 1.07996 * 119.62257 * 180.30907 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4262 1.4461 -0.4193 5 6 3.5288 1.1077 -1.8843 6 1 2.6382 0.8706 -2.4474 7 6 4.7589 1.1060 -2.5069 8 7 5.8429 1.3992 -1.8223 9 14 4.8859 0.6873 -4.3230 10 1 4.7580 1.9289 -5.1274 11 1 6.2020 0.0551 -4.5944 12 1 3.7988 -0.2552 -4.6909 13 6 1.8356 2.0084 1.3174 14 1 2.2470 1.3570 2.0884 15 6 0.3655 2.2213 1.5714 16 8 -0.3685 2.5186 0.6588 17 8 -0.1287 2.0804 2.8115 18 6 -1.5537 2.3000 2.9820 19 6 2.5480 3.3361 1.3488 20 6 3.4862 3.6062 2.3336 21 6 4.1171 4.8406 2.3230 22 6 3.7920 5.7547 1.3385 23 7 2.8945 5.4634 0.4175 24 6 2.2793 4.2972 0.3931 25 1 -0.3632 -1.0104 -0.1874 26 1 -0.3633 0.3429 0.9687 27 1 -0.3633 0.6675 -0.7814 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 4.0096 0.7309 0.1604 31 1 3.8123 2.4515 -0.2508 32 1 6.7084 1.3976 -2.2603 33 1 -2.1069 1.5925 2.3643 34 1 -1.8210 2.1551 4.0288 35 1 -1.8032 3.3176 2.6812 36 1 3.7199 2.8724 3.0908 37 1 4.8534 5.0848 3.0745 38 1 4.2786 6.7187 1.3235 39 1 1.5534 4.0927 -0.3800 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000154253986.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:30:50 Heat of formation + Delta-G solvation = -53.033797 kcal Electronic energy + Delta-G solvation = -22623.988857 eV Core-core repulsion = 19338.644886 eV Total energy + Delta-G solvation = -3285.343971 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.11109 -40.85261 -38.68979 -37.22892 -34.86474 -34.08729 -32.82302 -31.29674 -29.98290 -28.51568 -26.84414 -24.58985 -24.49556 -23.57770 -22.70194 -21.07648 -19.00520 -18.45601 -18.25807 -17.67627 -17.52270 -17.09912 -16.66615 -16.22170 -15.69798 -15.30338 -15.12789 -14.72440 -14.29972 -14.24864 -14.15299 -14.13114 -13.95904 -13.65203 -13.01835 -12.92439 -12.82984 -12.65033 -12.55558 -12.36389 -11.96086 -11.88052 -11.67304 -11.50726 -11.26751 -10.73492 -10.60815 -10.42295 -9.88892 -9.17365 -8.20632 -6.28425 0.09415 0.34917 1.15987 1.39540 1.41537 1.51176 1.61572 2.40066 2.79564 3.12029 3.21730 3.44019 3.73668 3.82787 3.88059 4.06297 4.09085 4.12700 4.31931 4.32709 4.36977 4.40354 4.59074 4.63457 4.68026 4.79768 4.85737 5.03550 5.08782 5.14704 5.24592 5.25895 5.30540 5.42796 5.63340 5.77566 6.00594 6.20288 6.43192 6.79157 6.85786 7.03849 7.39689 8.89873 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.014677 B = 0.007305 C = 0.005424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1907.319676 B = 3831.888306 C = 5161.047753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.051 3.949 3 N -0.525 5.525 4 C 0.217 3.783 5 C -0.521 4.521 6 H 0.058 0.942 7 C 0.009 3.991 8 N -0.928 5.928 9 Si 0.961 3.039 10 H -0.279 1.279 11 H -0.280 1.280 12 H -0.265 1.265 13 C 0.139 3.861 14 H 0.085 0.915 15 C 0.480 3.520 16 O -0.504 6.504 17 O -0.365 6.365 18 C 0.028 3.972 19 C -0.141 4.141 20 C -0.067 4.067 21 C -0.165 4.165 22 C 0.088 3.912 23 N -0.516 5.516 24 C 0.120 3.880 25 H 0.074 0.926 26 H 0.041 0.959 27 H 0.052 0.948 28 H 0.074 0.926 29 H 0.038 0.962 30 H -0.029 1.029 31 H 0.020 0.980 32 H 0.264 0.736 33 H 0.063 0.937 34 H 0.136 0.864 35 H 0.058 0.942 36 H 0.161 0.839 37 H 0.178 0.822 38 H 0.186 0.814 39 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.139 2.216 13.433 15.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.077 4.077 3 N -0.251 5.251 4 C 0.092 3.908 5 C -0.560 4.560 6 H 0.076 0.924 7 C -0.190 4.190 8 N -0.568 5.568 9 Si 0.786 3.214 10 H -0.205 1.205 11 H -0.205 1.205 12 H -0.189 1.189 13 C 0.029 3.971 14 H 0.102 0.898 15 C 0.322 3.678 16 O -0.390 6.390 17 O -0.281 6.281 18 C -0.064 4.064 19 C -0.143 4.143 20 C -0.093 4.093 21 C -0.184 4.184 22 C -0.069 4.069 23 N -0.225 5.225 24 C -0.036 4.036 25 H 0.093 0.907 26 H 0.060 0.940 27 H 0.071 0.929 28 H 0.092 0.908 29 H 0.057 0.943 30 H -0.011 1.011 31 H 0.038 0.962 32 H 0.072 0.928 33 H 0.082 0.918 34 H 0.154 0.846 35 H 0.077 0.923 36 H 0.179 0.821 37 H 0.195 0.805 38 H 0.203 0.797 39 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -8.711 3.201 12.174 15.308 hybrid contribution 0.776 -1.238 -0.102 1.464 sum -7.935 1.963 12.073 14.580 Atomic orbital electron populations 1.21934 0.94265 1.01995 1.00874 1.22156 0.96040 0.88193 1.01315 1.61950 1.22758 1.18330 1.22066 1.19398 0.81439 0.95340 0.94664 1.21388 0.92958 1.46329 0.95286 0.92370 1.25754 0.95308 0.95263 1.02656 1.70055 0.98784 1.50026 1.37962 0.85503 0.77625 0.78426 0.79804 1.20511 1.20499 1.18921 1.19966 0.88308 0.94677 0.94188 0.89761 1.23221 0.90855 0.72988 0.80782 1.90644 1.60304 1.43054 1.44995 1.86493 1.29131 1.81499 1.30982 1.23569 0.75791 1.01969 1.05118 1.20292 1.00368 0.95181 0.98494 1.21857 0.92584 0.98054 0.96774 1.22484 1.01248 0.93556 1.01087 1.23433 0.92765 1.01012 0.89649 1.67696 1.09265 1.20334 1.25200 1.22431 0.96784 0.88569 0.95855 0.90689 0.93974 0.92882 0.90791 0.94347 1.01131 0.96223 0.92754 0.91813 0.84591 0.92296 0.82141 0.80509 0.79696 0.84752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.43 8.41 71.98 0.61 -3.82 16 2 C 0.05 1.95 5.53 86.30 0.48 2.43 16 3 N -0.52 -22.79 3.94 -884.36 -3.49 -26.28 16 4 C 0.22 11.25 4.37 85.56 0.37 11.62 16 5 C -0.52 -29.57 8.31 25.60 0.21 -29.36 16 6 H 0.06 3.31 7.52 -2.91 -0.02 3.29 16 7 C 0.01 0.50 5.46 84.65 0.46 0.96 16 8 N -0.93 -55.19 13.29 21.45 0.28 -54.91 16 9 Si 0.96 44.95 29.54 68.60 2.03 46.98 16 10 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 11 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 12 H -0.26 -11.93 7.11 99.48 0.71 -11.22 16 13 C 0.14 5.09 2.22 43.42 0.10 5.19 16 14 H 0.08 2.78 7.70 -2.39 -0.02 2.76 16 15 C 0.48 16.35 4.02 71.24 0.29 16.64 16 16 O -0.50 -19.45 14.02 21.96 0.31 -19.14 16 17 O -0.36 -10.07 10.55 -51.45 -0.54 -10.61 16 18 C 0.03 0.56 10.55 113.37 1.20 1.76 16 19 C -0.14 -5.19 3.06 -19.77 -0.06 -5.25 16 20 C -0.07 -1.98 9.81 22.47 0.22 -1.76 16 21 C -0.16 -4.26 10.11 22.36 0.23 -4.04 16 22 C 0.09 2.63 11.18 84.69 0.95 3.57 16 23 N -0.52 -19.92 10.36 -195.86 -2.03 -21.95 16 24 C 0.12 4.95 9.52 84.67 0.81 5.76 16 25 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 26 H 0.04 1.32 5.37 -2.39 -0.01 1.31 16 27 H 0.05 2.00 7.44 -2.39 -0.02 1.98 16 28 H 0.07 3.14 6.85 -2.39 -0.02 3.13 16 29 H 0.04 1.35 7.86 -2.39 -0.02 1.33 16 30 H -0.03 -1.60 8.08 -2.39 -0.02 -1.62 16 31 H 0.02 1.11 5.67 -2.38 -0.01 1.09 16 32 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16 33 H 0.06 1.25 8.13 -2.38 -0.02 1.23 16 34 H 0.14 1.60 8.14 -2.38 -0.02 1.58 16 35 H 0.06 1.20 8.13 -2.38 -0.02 1.18 16 36 H 0.16 3.76 8.01 -2.91 -0.02 3.74 16 37 H 0.18 2.97 8.06 -2.91 -0.02 2.94 16 38 H 0.19 4.02 8.06 -2.91 -0.02 4.00 16 39 H 0.13 6.14 7.94 -2.91 -0.02 6.12 16 Total: -1.00 -70.93 325.00 3.45 -67.48 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: 1.04 Total: 14.74 kcal Atomic # 6 Polarization: -2.16 SS G_CDS: 5.85 Total: 3.69 kcal Atomic # 7 Polarization: -97.91 SS G_CDS: -5.23 Total: -103.14 kcal Atomic # 8 Polarization: -29.52 SS G_CDS: -0.24 Total: -29.75 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Total: -70.93 3.45 -67.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000154253986.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.446 kcal (2) G-P(sol) polarization free energy of solvation -70.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds