Wall clock time and date at job start Tue Mar 31 2020 00:30:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46899 * 109.47260 * 2 1 4 4 C 1.46897 * 111.00471 * 297.25928 * 3 2 1 5 5 C 1.50703 * 109.46951 * 291.89871 * 4 3 2 6 6 H 1.08002 * 119.99981 * 3.73727 * 5 4 3 7 7 C 1.37879 * 120.00330 * 183.74242 * 5 4 3 8 8 N 1.31506 * 120.00143 * 179.97438 * 7 5 4 9 9 Si 1.86800 * 119.99517 * 359.97438 * 7 5 4 10 10 H 1.48500 * 109.47061 * 90.00615 * 9 7 5 11 11 H 1.48502 * 109.46963 * 209.99934 * 9 7 5 12 12 H 1.48498 * 109.47348 * 330.00044 * 9 7 5 13 13 C 1.46905 * 110.99722 * 61.21205 * 3 2 1 14 14 H 1.08999 * 109.47157 * 298.82591 * 13 3 2 15 15 C 1.50692 * 109.47195 * 58.82964 * 13 3 2 16 16 O 1.20830 * 120.00075 * 28.34136 * 15 13 3 17 17 O 1.34230 * 120.00140 * 208.33864 * 15 13 3 18 18 C 1.45200 * 117.00175 * 179.97438 * 17 15 13 19 19 C 1.50704 * 109.46907 * 178.83192 * 13 3 2 20 20 C 1.38671 * 120.42211 * 133.82299 * 19 13 3 21 21 C 1.38627 * 118.42289 * 179.78365 * 20 19 13 22 22 C 1.38222 * 119.15716 * 0.50526 * 21 20 19 23 23 N 1.31851 * 120.77087 * 359.72939 * 22 21 20 24 24 C 1.31890 * 121.71987 * 359.97438 * 23 22 21 25 25 H 1.09004 * 109.47285 * 60.42230 * 1 2 3 26 26 H 1.08999 * 109.47337 * 180.42730 * 1 2 3 27 27 H 1.09007 * 109.47092 * 300.42465 * 1 2 3 28 28 H 1.09007 * 109.47207 * 240.00263 * 2 1 3 29 29 H 1.09004 * 109.47597 * 120.00353 * 2 1 3 30 30 H 1.09004 * 109.46883 * 51.89106 * 4 3 2 31 31 H 1.08994 * 109.47533 * 171.89679 * 4 3 2 32 32 H 0.97003 * 119.99832 * 179.97438 * 8 7 5 33 33 H 1.08999 * 109.47257 * 300.00219 * 18 17 15 34 34 H 1.09004 * 109.47027 * 60.00255 * 18 17 15 35 35 H 1.08999 * 109.46834 * 180.02562 * 18 17 15 36 36 H 1.08007 * 120.78268 * 0.02562 * 20 19 13 37 37 H 1.08000 * 120.41952 * 180.21852 * 21 20 19 38 38 H 1.08008 * 119.61437 * 179.75563 * 22 21 20 39 39 H 1.08006 * 119.61615 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6030 2.0908 -1.2191 5 6 2.3185 1.5040 -2.4086 6 1 2.9668 0.6497 -2.2813 7 6 2.1454 2.0579 -3.6593 8 7 2.7702 1.5462 -4.6972 9 14 1.0235 3.5351 -3.8795 10 1 1.8095 4.7834 -3.7084 11 1 0.4293 3.5070 -5.2401 12 1 -0.0600 3.4894 -2.8651 13 6 1.5724 2.1014 1.2020 14 1 0.4831 2.1340 1.2213 15 6 2.0754 1.3863 2.4293 16 8 3.0971 0.7432 2.3777 17 8 1.3886 1.4637 3.5800 18 6 1.9319 0.7493 4.7214 19 6 2.1167 3.5066 1.1808 20 6 1.2928 4.5832 1.4727 21 6 1.8378 5.8575 1.4455 22 6 3.1722 6.0125 1.1202 23 7 3.9250 4.9659 0.8434 24 6 3.4418 3.7389 0.8653 25 1 -0.3634 0.5073 -0.8938 26 1 -0.3634 -1.0276 0.0077 27 1 -0.3634 0.5204 0.8862 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8900 30 1 0.5266 1.9814 -1.3523 31 1 1.8526 3.1480 -1.1301 32 1 2.6481 1.9356 -5.5772 33 1 1.9943 -0.3137 4.4885 34 1 2.9275 1.1306 4.9484 35 1 1.2815 0.8944 5.5839 36 1 0.2522 4.4320 1.7193 37 1 1.2263 6.7187 1.6710 38 1 3.6035 7.0023 1.0929 39 1 4.0889 2.9062 0.6324 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000154254127.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:30:58 Heat of formation + Delta-G solvation = -29.098055 kcal Electronic energy + Delta-G solvation = -22641.109627 eV Core-core repulsion = 19356.803588 eV Total energy + Delta-G solvation = -3284.306039 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.83180 -39.67926 -37.57942 -36.05500 -33.08400 -32.45705 -31.65650 -29.49455 -28.83994 -27.49727 -25.50957 -23.35689 -23.23351 -22.41528 -21.04370 -19.22947 -17.59356 -17.10913 -16.91985 -16.41038 -16.28122 -16.04155 -15.05176 -14.83867 -14.36138 -14.06601 -13.68935 -13.35137 -13.25375 -13.08490 -12.90189 -12.76543 -12.43944 -12.19899 -11.94627 -11.62595 -11.57184 -11.14060 -10.81970 -10.76462 -10.63370 -10.32507 -10.14245 -9.94733 -9.60106 -9.34806 -9.21914 -8.78113 -8.56736 -7.57391 -6.07761 -4.05100 1.22281 1.45944 2.36937 2.72489 3.25497 3.32183 3.33629 3.98920 4.38397 4.47290 4.62733 4.93428 4.95985 4.96879 5.05776 5.12581 5.17622 5.19128 5.26305 5.42829 5.45688 5.56860 5.66369 5.76912 5.88894 6.00799 6.17651 6.20920 6.36072 6.40727 6.43022 6.66014 6.82444 6.91019 6.93043 7.43819 7.69832 7.76525 7.98927 8.21992 8.57671 9.01586 9.52945 11.05159 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.014657 B = 0.007880 C = 0.005918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1909.864926 B = 3552.361183 C = 4730.194559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.053 3.947 3 N -0.501 5.501 4 C 0.163 3.837 5 C -0.506 4.506 6 H 0.084 0.916 7 C 0.073 3.927 8 N -0.896 5.896 9 Si 0.868 3.132 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.269 1.269 13 C 0.136 3.864 14 H 0.076 0.924 15 C 0.469 3.531 16 O -0.477 6.477 17 O -0.364 6.364 18 C 0.036 3.964 19 C -0.133 4.133 20 C -0.063 4.063 21 C -0.183 4.183 22 C 0.098 3.902 23 N -0.486 5.486 24 C 0.149 3.851 25 H 0.069 0.931 26 H 0.056 0.944 27 H 0.043 0.957 28 H 0.098 0.902 29 H 0.062 0.938 30 H -0.002 1.002 31 H 0.027 0.973 32 H 0.264 0.736 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.098 0.902 36 H 0.134 0.866 37 H 0.134 0.866 38 H 0.153 0.847 39 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.071 4.093 16.772 18.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C -0.075 4.075 3 N -0.226 5.226 4 C 0.037 3.963 5 C -0.544 4.544 6 H 0.102 0.898 7 C -0.129 4.129 8 N -0.534 5.534 9 Si 0.695 3.305 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.193 1.193 13 C 0.026 3.974 14 H 0.093 0.907 15 C 0.309 3.691 16 O -0.361 6.361 17 O -0.281 6.281 18 C -0.058 4.058 19 C -0.135 4.135 20 C -0.089 4.089 21 C -0.203 4.203 22 C -0.059 4.059 23 N -0.194 5.194 24 C -0.008 4.008 25 H 0.088 0.912 26 H 0.075 0.925 27 H 0.062 0.938 28 H 0.116 0.884 29 H 0.080 0.920 30 H 0.016 0.984 31 H 0.045 0.955 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.116 0.884 36 H 0.152 0.848 37 H 0.151 0.849 38 H 0.170 0.830 39 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -4.310 4.011 16.375 17.401 hybrid contribution -2.362 0.634 0.001 2.445 sum -6.671 4.645 16.376 18.283 Atomic orbital electron populations 1.22454 0.99129 1.01857 1.01772 1.22171 0.92029 0.89989 1.03331 1.62168 1.58806 1.01937 0.99688 1.20296 0.94692 0.94292 0.86986 1.20915 1.27839 1.16333 0.89359 0.89828 1.24823 0.95504 0.96658 0.95900 1.69872 1.42700 1.41304 0.99573 0.86974 0.81701 0.84163 0.77668 1.20114 1.21075 1.19338 1.19960 0.98612 0.90139 0.88734 0.90657 1.23571 0.82516 0.78905 0.84107 1.90664 1.23394 1.37841 1.84201 1.86506 1.53269 1.68444 1.19892 1.23216 0.99971 0.96690 0.85924 1.20329 0.96199 0.93650 1.03337 1.21459 0.99824 0.92103 0.95546 1.22020 0.97112 0.97620 1.03534 1.22830 0.90872 0.98013 0.94160 1.67835 1.38979 0.99319 1.13304 1.22918 0.93035 0.94433 0.90411 0.91228 0.92481 0.93819 0.88386 0.92006 0.98433 0.95520 0.92592 0.91922 0.92009 0.88372 0.84837 0.84859 0.82976 0.81271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.14 9.25 37.15 0.34 -2.80 16 2 C 0.05 0.99 5.53 -3.83 -0.02 0.97 16 3 N -0.50 -10.20 3.81 -230.87 -0.88 -11.08 16 4 C 0.16 3.78 3.34 -4.98 -0.02 3.76 16 5 C -0.51 -14.00 9.12 -34.44 -0.31 -14.31 16 6 H 0.08 2.53 7.37 -52.49 -0.39 2.14 16 7 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 8 N -0.90 -27.18 13.96 55.43 0.77 -26.41 16 9 Si 0.87 21.34 27.40 -169.99 -4.66 16.69 16 10 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 11 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.27 -6.28 6.65 56.52 0.38 -5.90 16 13 C 0.14 2.34 1.80 -70.02 -0.13 2.22 16 14 H 0.08 1.19 6.23 -51.93 -0.32 0.86 16 15 C 0.47 7.77 6.00 36.00 0.22 7.99 16 16 O -0.48 -9.01 15.25 -18.75 -0.29 -9.30 16 17 O -0.36 -5.07 10.57 -39.26 -0.41 -5.48 16 18 C 0.04 0.37 10.56 101.05 1.07 1.44 16 19 C -0.13 -2.26 3.38 -104.48 -0.35 -2.61 16 20 C -0.06 -0.89 9.81 -39.28 -0.39 -1.27 16 21 C -0.18 -2.34 10.11 -39.44 -0.40 -2.74 16 22 C 0.10 1.41 11.18 -17.55 -0.20 1.21 16 23 N -0.49 -8.69 10.36 -13.25 -0.14 -8.83 16 24 C 0.15 2.79 9.83 -17.55 -0.17 2.62 16 25 H 0.07 1.25 6.32 -51.93 -0.33 0.92 16 26 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.04 0.64 6.43 -51.93 -0.33 0.31 16 28 H 0.10 2.05 6.86 -51.93 -0.36 1.69 16 29 H 0.06 1.12 6.29 -51.93 -0.33 0.79 16 30 H 0.00 -0.04 5.33 -51.93 -0.28 -0.32 16 31 H 0.03 0.64 5.46 -51.93 -0.28 0.36 16 32 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 33 H 0.06 0.63 8.13 -51.93 -0.42 0.21 16 34 H 0.06 0.64 8.13 -51.93 -0.42 0.22 16 35 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.13 1.52 8.04 -52.48 -0.42 1.10 16 37 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 38 H 0.15 1.66 8.06 -52.48 -0.42 1.24 16 39 H 0.17 3.43 7.91 -52.48 -0.42 3.02 16 LS Contribution 320.80 15.07 4.83 4.83 Total: -1.00 -32.39 320.80 -6.37 -38.76 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: -5.15 Total: 2.36 kcal Atomic # 6 Polarization: -1.08 SS G_CDS: -0.46 Total: -1.54 kcal Atomic # 7 Polarization: -46.08 SS G_CDS: -0.24 Total: -46.32 kcal Atomic # 8 Polarization: -14.08 SS G_CDS: -0.70 Total: -14.78 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.66 Total: 16.69 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -32.39 -6.37 -38.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000154254127.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.665 kcal (2) G-P(sol) polarization free energy of solvation -32.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds