Wall clock time and date at job start Tue Mar 31 2020 00:30:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46899 * 109.47260 * 2 1 4 4 C 1.46897 * 111.00471 * 297.25928 * 3 2 1 5 5 C 1.50703 * 109.46951 * 291.89871 * 4 3 2 6 6 H 1.08002 * 119.99981 * 3.73727 * 5 4 3 7 7 C 1.37879 * 120.00330 * 183.74242 * 5 4 3 8 8 N 1.31506 * 120.00143 * 179.97438 * 7 5 4 9 9 Si 1.86800 * 119.99517 * 359.97438 * 7 5 4 10 10 H 1.48500 * 109.47061 * 90.00615 * 9 7 5 11 11 H 1.48502 * 109.46963 * 209.99934 * 9 7 5 12 12 H 1.48498 * 109.47348 * 330.00044 * 9 7 5 13 13 C 1.46905 * 110.99722 * 61.21205 * 3 2 1 14 14 H 1.08999 * 109.47157 * 298.82591 * 13 3 2 15 15 C 1.50692 * 109.47195 * 58.82964 * 13 3 2 16 16 O 1.20830 * 120.00075 * 28.34136 * 15 13 3 17 17 O 1.34230 * 120.00140 * 208.33864 * 15 13 3 18 18 C 1.45200 * 117.00175 * 179.97438 * 17 15 13 19 19 C 1.50704 * 109.46907 * 178.83192 * 13 3 2 20 20 C 1.38671 * 120.42211 * 133.82299 * 19 13 3 21 21 C 1.38627 * 118.42289 * 179.78365 * 20 19 13 22 22 C 1.38222 * 119.15716 * 0.50526 * 21 20 19 23 23 N 1.31851 * 120.77087 * 359.72939 * 22 21 20 24 24 C 1.31890 * 121.71987 * 359.97438 * 23 22 21 25 25 H 1.09004 * 109.47285 * 60.42230 * 1 2 3 26 26 H 1.08999 * 109.47337 * 180.42730 * 1 2 3 27 27 H 1.09007 * 109.47092 * 300.42465 * 1 2 3 28 28 H 1.09007 * 109.47207 * 240.00263 * 2 1 3 29 29 H 1.09004 * 109.47597 * 120.00353 * 2 1 3 30 30 H 1.09004 * 109.46883 * 51.89106 * 4 3 2 31 31 H 1.08994 * 109.47533 * 171.89679 * 4 3 2 32 32 H 0.97003 * 119.99832 * 179.97438 * 8 7 5 33 33 H 1.08999 * 109.47257 * 300.00219 * 18 17 15 34 34 H 1.09004 * 109.47027 * 60.00255 * 18 17 15 35 35 H 1.08999 * 109.46834 * 180.02562 * 18 17 15 36 36 H 1.08007 * 120.78268 * 0.02562 * 20 19 13 37 37 H 1.08000 * 120.41952 * 180.21852 * 21 20 19 38 38 H 1.08008 * 119.61437 * 179.75563 * 22 21 20 39 39 H 1.08006 * 119.61615 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6030 2.0908 -1.2191 5 6 2.3185 1.5040 -2.4086 6 1 2.9668 0.6497 -2.2813 7 6 2.1454 2.0579 -3.6593 8 7 2.7702 1.5462 -4.6972 9 14 1.0235 3.5351 -3.8795 10 1 1.8095 4.7834 -3.7084 11 1 0.4293 3.5070 -5.2401 12 1 -0.0600 3.4894 -2.8651 13 6 1.5724 2.1014 1.2020 14 1 0.4831 2.1340 1.2213 15 6 2.0754 1.3863 2.4293 16 8 3.0971 0.7432 2.3777 17 8 1.3886 1.4637 3.5800 18 6 1.9319 0.7493 4.7214 19 6 2.1167 3.5066 1.1808 20 6 1.2928 4.5832 1.4727 21 6 1.8378 5.8575 1.4455 22 6 3.1722 6.0125 1.1202 23 7 3.9250 4.9659 0.8434 24 6 3.4418 3.7389 0.8653 25 1 -0.3634 0.5073 -0.8938 26 1 -0.3634 -1.0276 0.0077 27 1 -0.3634 0.5204 0.8862 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8900 30 1 0.5266 1.9814 -1.3523 31 1 1.8526 3.1480 -1.1301 32 1 2.6481 1.9356 -5.5772 33 1 1.9943 -0.3137 4.4885 34 1 2.9275 1.1306 4.9484 35 1 1.2815 0.8944 5.5839 36 1 0.2522 4.4320 1.7193 37 1 1.2263 6.7187 1.6710 38 1 3.6035 7.0023 1.0929 39 1 4.0889 2.9062 0.6324 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000154254127.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:30:56 Heat of formation + Delta-G solvation = -51.619204 kcal Electronic energy + Delta-G solvation = -22642.086217 eV Core-core repulsion = 19356.803588 eV Total energy + Delta-G solvation = -3285.282629 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.10023 -40.85989 -39.00193 -37.34871 -34.84008 -34.09730 -32.80881 -31.19798 -30.10308 -28.76819 -26.91617 -24.90531 -24.52202 -23.65692 -22.52988 -20.71553 -19.01357 -18.80895 -18.22106 -17.66047 -17.49312 -17.34057 -16.46498 -16.21875 -16.21508 -15.33575 -14.95946 -14.76236 -14.55685 -14.49463 -14.25120 -14.04064 -13.93790 -13.49430 -13.36984 -13.00858 -12.87064 -12.61960 -12.58356 -12.43548 -11.95790 -11.85679 -11.63260 -11.59422 -11.42330 -10.80011 -10.74005 -10.42347 -9.94830 -9.12186 -8.27851 -6.30227 0.05927 0.33416 1.09424 1.31249 1.33131 1.42393 1.56878 2.32445 2.77387 3.03719 3.14341 3.41386 3.73795 3.78114 3.86613 4.05644 4.08830 4.14119 4.29951 4.30557 4.31660 4.36694 4.51207 4.60745 4.66230 4.69410 4.85044 4.87370 4.97478 5.13796 5.16052 5.25117 5.26525 5.36023 5.51375 5.76193 5.88258 6.15965 6.51855 6.72067 6.76065 7.03823 7.31590 8.88973 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.014657 B = 0.007880 C = 0.005918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1909.864926 B = 3552.361183 C = 4730.194559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.055 3.945 3 N -0.524 5.524 4 C 0.182 3.818 5 C -0.509 4.509 6 H 0.036 0.964 7 C 0.011 3.989 8 N -0.947 5.947 9 Si 0.937 3.063 10 H -0.274 1.274 11 H -0.280 1.280 12 H -0.241 1.241 13 C 0.138 3.862 14 H 0.101 0.899 15 C 0.475 3.525 16 O -0.511 6.511 17 O -0.358 6.358 18 C 0.028 3.972 19 C -0.148 4.148 20 C -0.061 4.061 21 C -0.165 4.165 22 C 0.088 3.912 23 N -0.520 5.520 24 C 0.120 3.880 25 H 0.053 0.947 26 H 0.077 0.923 27 H 0.066 0.934 28 H 0.062 0.938 29 H 0.067 0.933 30 H 0.008 0.992 31 H 0.025 0.975 32 H 0.266 0.734 33 H 0.062 0.938 34 H 0.057 0.943 35 H 0.139 0.861 36 H 0.170 0.830 37 H 0.181 0.819 38 H 0.185 0.815 39 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.431 6.716 19.133 22.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.073 4.073 3 N -0.249 5.249 4 C 0.056 3.944 5 C -0.548 4.548 6 H 0.054 0.946 7 C -0.186 4.186 8 N -0.588 5.588 9 Si 0.761 3.239 10 H -0.200 1.200 11 H -0.206 1.206 12 H -0.164 1.164 13 C 0.028 3.972 14 H 0.118 0.882 15 C 0.317 3.683 16 O -0.398 6.398 17 O -0.274 6.274 18 C -0.065 4.065 19 C -0.151 4.151 20 C -0.088 4.088 21 C -0.184 4.184 22 C -0.068 4.068 23 N -0.229 5.229 24 C -0.037 4.037 25 H 0.072 0.928 26 H 0.095 0.905 27 H 0.085 0.915 28 H 0.080 0.920 29 H 0.085 0.915 30 H 0.026 0.974 31 H 0.043 0.957 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.157 0.843 36 H 0.187 0.813 37 H 0.199 0.801 38 H 0.202 0.798 39 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -7.689 6.616 18.779 21.344 hybrid contribution -1.217 -0.204 -0.597 1.371 sum -8.906 6.412 18.183 21.238 Atomic orbital electron populations 1.22345 0.96447 1.03400 1.01967 1.22065 0.94219 0.89178 1.01827 1.61886 1.60238 1.02537 1.00219 1.19912 0.94207 0.93793 0.86532 1.21155 1.27068 1.14947 0.91584 0.94557 1.25750 0.97356 1.00067 0.95424 1.70042 1.45006 1.43458 1.00254 0.85860 0.80101 0.79543 0.78431 1.20009 1.20568 1.16371 1.19973 0.99749 0.90086 0.87391 0.88205 1.23453 0.81982 0.78046 0.84824 1.90659 1.24891 1.39421 1.84861 1.86477 1.52639 1.68523 1.19728 1.23588 1.00914 0.96365 0.85640 1.20369 0.95827 0.94364 1.04529 1.21920 1.01073 0.91552 0.94208 1.22529 0.96579 0.98626 1.00636 1.23499 0.91919 0.98221 0.93194 1.67739 1.40677 0.99807 1.14646 1.22478 0.93827 0.94182 0.93185 0.92821 0.90451 0.91468 0.91960 0.91470 0.97414 0.95722 0.92514 0.91920 0.92416 0.84289 0.81263 0.80139 0.79762 0.85071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.65 9.25 71.98 0.67 -4.98 16 2 C 0.05 2.11 5.53 86.30 0.48 2.59 16 3 N -0.52 -21.74 3.81 -884.35 -3.37 -25.11 16 4 C 0.18 8.47 3.34 85.56 0.29 8.75 16 5 C -0.51 -29.46 9.12 25.60 0.23 -29.23 16 6 H 0.04 2.38 7.37 -2.91 -0.02 2.36 16 7 C 0.01 0.66 5.47 84.66 0.46 1.13 16 8 N -0.95 -59.86 13.96 21.45 0.30 -59.56 16 9 Si 0.94 43.87 27.40 68.60 1.88 45.75 16 10 H -0.27 -12.75 7.11 99.48 0.71 -12.05 16 11 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 12 H -0.24 -10.09 6.65 99.48 0.66 -9.43 16 13 C 0.14 4.58 1.80 43.42 0.08 4.66 16 14 H 0.10 2.80 6.23 -2.39 -0.01 2.78 16 15 C 0.48 15.36 6.00 71.23 0.43 15.79 16 16 O -0.51 -19.79 15.25 21.95 0.33 -19.46 16 17 O -0.36 -9.04 10.57 -51.41 -0.54 -9.59 16 18 C 0.03 0.51 10.56 113.37 1.20 1.71 16 19 C -0.15 -4.83 3.38 -19.77 -0.07 -4.90 16 20 C -0.06 -1.48 9.81 22.47 0.22 -1.26 16 21 C -0.16 -3.39 10.11 22.36 0.23 -3.17 16 22 C 0.09 2.28 11.18 84.69 0.95 3.23 16 23 N -0.52 -18.52 10.36 -195.83 -2.03 -20.55 16 24 C 0.12 4.59 9.83 84.67 0.83 5.43 16 25 H 0.05 1.83 6.32 -2.39 -0.02 1.82 16 26 H 0.08 2.05 8.14 -2.39 -0.02 2.04 16 27 H 0.07 1.75 6.43 -2.38 -0.02 1.73 16 28 H 0.06 2.80 6.86 -2.38 -0.02 2.78 16 29 H 0.07 2.49 6.29 -2.38 -0.01 2.47 16 30 H 0.01 0.37 5.33 -2.38 -0.01 0.36 16 31 H 0.02 1.17 5.46 -2.39 -0.01 1.16 16 32 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 33 H 0.06 1.16 8.13 -2.39 -0.02 1.14 16 34 H 0.06 1.12 8.13 -2.38 -0.02 1.10 16 35 H 0.14 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.17 2.81 8.04 -2.91 -0.02 2.78 16 37 H 0.18 2.04 8.06 -2.91 -0.02 2.01 16 38 H 0.19 3.35 8.06 -2.91 -0.02 3.32 16 39 H 0.13 5.85 7.91 -2.91 -0.02 5.82 16 Total: -1.00 -75.92 320.80 3.57 -72.35 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: 1.01 Total: 16.41 kcal Atomic # 6 Polarization: -6.24 SS G_CDS: 5.99 Total: -0.26 kcal Atomic # 7 Polarization: -100.12 SS G_CDS: -5.10 Total: -105.22 kcal Atomic # 8 Polarization: -28.83 SS G_CDS: -0.21 Total: -29.04 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 1.88 Total: 45.75 kcal Total: -75.92 3.57 -72.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000154254127.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.733 kcal (2) G-P(sol) polarization free energy of solvation -75.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds