Wall clock time and date at job start Tue Mar 31 2020 00:44:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42907 * 109.46534 * 2 1 4 4 C 1.35898 * 116.99612 * 179.97438 * 3 2 1 5 5 C 1.38806 * 120.02033 * 0.02687 * 4 3 2 6 6 C 1.38177 * 120.08323 * 179.97438 * 5 4 3 7 7 C 1.38170 * 120.12129 * 359.74499 * 6 5 4 8 8 C 1.38882 * 120.03835 * 0.50657 * 7 6 5 9 9 N 1.39942 * 120.03946 * 179.76918 * 8 7 6 10 10 C 1.34776 * 119.99755 * 326.52851 * 9 8 7 11 11 O 1.21585 * 120.00612 * 354.67878 * 10 9 8 12 12 N 1.34780 * 119.99725 * 174.68980 * 10 9 8 13 13 C 1.46507 * 120.00063 * 179.97438 * 12 10 9 14 14 H 1.08997 * 109.46956 * 34.99166 * 13 12 10 15 15 C 1.52997 * 109.46690 * 274.99865 * 13 12 10 16 16 C 1.50695 * 109.47029 * 154.99644 * 13 12 10 17 17 H 1.07992 * 120.00512 * 359.97438 * 16 13 12 18 18 C 1.37884 * 119.99610 * 179.97438 * 16 13 12 19 19 N 1.31512 * 120.00158 * 359.97438 * 18 16 13 20 20 Si 1.86804 * 119.99919 * 179.97438 * 18 16 13 21 21 H 1.48502 * 109.46868 * 59.99881 * 20 18 16 22 22 H 1.48493 * 109.46924 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.46833 * 300.00051 * 20 18 16 24 24 C 1.38584 * 120.02312 * 179.97438 * 4 3 2 25 25 H 1.09001 * 109.47514 * 60.00276 * 1 2 3 26 26 H 1.09003 * 109.47260 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47678 * 300.00009 * 1 2 3 28 28 H 1.08996 * 109.47179 * 240.00477 * 2 1 3 29 29 H 1.08998 * 109.47017 * 119.99781 * 2 1 3 30 30 H 1.07999 * 119.96079 * 359.97438 * 5 4 3 31 31 H 1.07999 * 119.93536 * 179.97438 * 6 5 4 32 32 H 1.07998 * 119.97549 * 180.25562 * 7 6 5 33 33 H 0.97002 * 119.99962 * 146.52334 * 9 8 7 34 34 H 0.96996 * 120.00091 * 359.97438 * 12 10 9 35 35 H 1.08999 * 109.47364 * 299.99320 * 15 13 12 36 36 H 1.09001 * 109.47335 * 59.99711 * 15 13 12 37 37 H 1.09001 * 109.47085 * 180.02562 * 15 13 12 38 38 H 0.96997 * 120.00083 * 180.02562 * 19 18 16 39 39 H 1.08007 * 120.05635 * 0.05034 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.3535 1.5255 0.0005 5 6 4.1994 0.4250 0.0005 6 6 5.5695 0.6046 0.0005 7 6 6.1017 1.8797 -0.0047 8 6 5.2599 2.9844 0.0006 9 7 5.7989 4.2758 0.0001 10 6 6.9598 4.5217 0.6392 11 8 7.4892 3.6466 1.2965 12 7 7.5338 5.7379 0.5497 13 6 8.7954 6.0054 1.2448 14 1 9.4124 5.1070 1.2365 15 6 8.5047 6.4109 2.6911 16 6 9.5262 7.1233 0.5468 17 1 9.0944 7.5878 -0.3273 18 6 10.7462 7.5532 1.0243 19 7 11.2718 6.9879 2.0891 20 14 11.6525 8.9384 0.1587 21 1 10.8117 10.1624 0.1691 22 1 12.9306 9.2104 0.8641 23 1 11.9353 8.5439 -1.2447 24 6 3.8836 2.8059 0.0000 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5137 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.7864 -0.5728 0.0005 31 1 6.2255 -0.2533 0.0009 32 1 7.1728 2.0173 -0.0089 33 1 5.3371 4.9940 -0.4602 34 1 7.1116 6.4360 0.0251 35 1 7.8876 7.3094 2.6996 36 1 7.9760 5.6023 3.1959 37 1 9.4432 6.6104 3.2082 38 1 12.1299 7.2905 2.4252 39 1 3.2269 3.6633 0.0000 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157291649.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:44:03 Heat of formation + Delta-G solvation = -45.229976 kcal Electronic energy + Delta-G solvation = -20851.094656 eV Core-core repulsion = 17566.089084 eV Total energy + Delta-G solvation = -3285.005572 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.43036 -39.45134 -37.40857 -34.99490 -34.08174 -32.40585 -32.15017 -30.05797 -29.27357 -28.08534 -25.25931 -24.13149 -22.66880 -22.23705 -20.79011 -19.84505 -18.41726 -18.18642 -16.34437 -16.25506 -16.02850 -15.88349 -15.48417 -14.98840 -14.43986 -14.09305 -13.62944 -13.47373 -13.45614 -13.23085 -12.80582 -12.41429 -12.24589 -12.12914 -11.76889 -11.62614 -11.10560 -11.07724 -10.95112 -10.87933 -10.74178 -10.34088 -10.23661 -9.97208 -9.42626 -9.06316 -8.57324 -8.38081 -8.02297 -7.70341 -6.13248 -4.22631 1.40864 1.59524 2.88636 3.25303 3.30120 3.31100 3.39980 3.66564 4.07926 4.31766 4.66037 4.69476 4.86198 4.95050 4.99904 5.10904 5.19140 5.22018 5.43964 5.49983 5.57135 5.62509 5.74331 5.85439 6.34435 6.41412 6.48945 6.69134 6.80770 6.97712 7.08946 7.12639 7.24471 7.42830 7.44722 7.61261 7.82622 7.98611 8.14467 8.71295 8.83504 9.22053 9.45607 10.92754 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.048128 B = 0.002940 C = 0.002899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.643584 B = 9522.104148 C = 9656.571042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.056 3.944 3 O -0.319 6.319 4 C 0.145 3.855 5 C -0.236 4.236 6 C -0.061 4.061 7 C -0.156 4.156 8 C 0.222 3.778 9 N -0.695 5.695 10 C 0.693 3.307 11 O -0.579 6.579 12 N -0.718 5.718 13 C 0.281 3.719 14 H 0.050 0.950 15 C -0.149 4.149 16 C -0.535 4.535 17 H 0.061 0.939 18 C 0.066 3.934 19 N -0.883 5.883 20 Si 0.903 3.097 21 H -0.276 1.276 22 H -0.286 1.286 23 H -0.276 1.276 24 C -0.192 4.192 25 H 0.065 0.935 26 H 0.076 0.924 27 H 0.065 0.935 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.123 0.877 31 H 0.125 0.875 32 H 0.141 0.859 33 H 0.403 0.597 34 H 0.387 0.613 35 H 0.026 0.974 36 H 0.015 0.985 37 H 0.091 0.909 38 H 0.265 0.735 39 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.641 -11.013 -5.653 21.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.233 6.233 4 C 0.099 3.901 5 C -0.255 4.255 6 C -0.080 4.080 7 C -0.177 4.177 8 C 0.125 3.875 9 N -0.343 5.343 10 C 0.393 3.607 11 O -0.456 6.456 12 N -0.369 5.369 13 C 0.179 3.821 14 H 0.068 0.932 15 C -0.208 4.208 16 C -0.573 4.573 17 H 0.079 0.921 18 C -0.137 4.137 19 N -0.520 5.520 20 Si 0.731 3.269 21 H -0.202 1.202 22 H -0.211 1.211 23 H -0.202 1.202 24 C -0.214 4.214 25 H 0.084 0.916 26 H 0.095 0.905 27 H 0.085 0.915 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.141 0.859 31 H 0.143 0.857 32 H 0.158 0.842 33 H 0.238 0.762 34 H 0.219 0.781 35 H 0.045 0.955 36 H 0.034 0.966 37 H 0.109 0.891 38 H 0.075 0.925 39 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -17.004 -11.553 -4.890 21.131 hybrid contribution 0.141 1.255 -0.826 1.509 sum -16.862 -10.297 -5.716 20.568 Atomic orbital electron populations 1.21776 0.92951 1.02705 1.03485 1.22740 0.95605 0.82201 1.01425 1.86030 1.19258 1.29066 1.88914 1.18508 0.81925 0.93440 0.96192 1.21094 0.94373 0.97589 1.12469 1.20793 0.94050 0.96893 0.96277 1.21217 1.01269 0.90937 1.04301 1.17162 0.90570 0.84481 0.95267 1.42888 1.24910 1.09316 1.57152 1.16145 0.79989 0.84470 0.80086 1.90897 1.64086 1.45389 1.45210 1.45886 1.26948 1.10385 1.53706 1.18690 0.77893 0.97003 0.88526 0.93234 1.22112 1.02079 0.97396 0.99172 1.21162 1.04513 1.18591 1.13047 0.92102 1.24884 0.97009 0.96847 0.94960 1.69891 1.18302 1.41403 1.22419 0.86482 0.78922 0.81943 0.79584 1.20170 1.21118 1.20172 1.19921 0.93218 0.95535 1.12680 0.91589 0.90498 0.91542 0.92091 0.92052 0.85919 0.85659 0.84168 0.76161 0.78118 0.95500 0.96550 0.89061 0.92466 0.85221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 10.28 37.16 0.38 -0.57 16 2 C 0.06 0.46 5.46 37.16 0.20 0.66 16 3 O -0.32 -3.82 10.13 -19.42 -0.20 -4.02 16 4 C 0.14 1.92 6.68 -39.24 -0.26 1.66 16 5 C -0.24 -2.90 9.04 -39.39 -0.36 -3.26 16 6 C -0.06 -0.83 10.03 -39.63 -0.40 -1.23 16 7 C -0.16 -2.57 8.65 -39.37 -0.34 -2.91 16 8 C 0.22 3.53 6.27 -83.72 -0.53 3.00 16 9 N -0.70 -11.03 5.35 -14.24 -0.08 -11.10 16 10 C 0.69 14.18 8.26 -86.92 -0.72 13.46 16 11 O -0.58 -14.06 13.70 5.29 0.07 -13.98 16 12 N -0.72 -14.93 5.07 -59.81 -0.30 -15.23 16 13 C 0.28 7.13 2.56 -69.08 -0.18 6.96 16 14 H 0.05 1.45 7.58 -51.93 -0.39 1.06 16 15 C -0.15 -3.73 9.26 37.16 0.34 -3.39 16 16 C -0.53 -14.07 8.73 -34.44 -0.30 -14.37 16 17 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 18 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 19 N -0.88 -24.78 11.32 55.43 0.63 -24.16 16 20 Si 0.90 20.53 29.54 -169.99 -5.02 15.51 16 21 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 22 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 23 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 24 C -0.19 -2.68 9.90 -39.25 -0.39 -3.07 16 25 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 26 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 27 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.44 7.66 -51.93 -0.40 0.05 16 29 H 0.06 0.47 7.66 -51.93 -0.40 0.07 16 30 H 0.12 1.18 6.29 -52.49 -0.33 0.85 16 31 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 32 H 0.14 2.61 6.42 -52.49 -0.34 2.28 16 33 H 0.40 4.93 8.83 -40.82 -0.36 4.57 16 34 H 0.39 6.82 8.56 -40.82 -0.35 6.47 16 35 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.09 2.47 6.07 -51.93 -0.32 2.16 16 38 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 39 H 0.13 1.60 8.06 -52.48 -0.42 1.18 16 LS Contribution 328.80 15.07 4.96 4.96 Total: -1.00 -31.51 328.80 -7.96 -39.47 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: -5.38 Total: 9.92 kcal Atomic # 6 Polarization: 1.28 SS G_CDS: -2.63 Total: -1.36 kcal Atomic # 7 Polarization: -50.74 SS G_CDS: 0.25 Total: -50.49 kcal Atomic # 8 Polarization: -17.87 SS G_CDS: -0.12 Total: -18.00 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -31.51 -7.96 -39.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157291649.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.762 kcal (2) G-P(sol) polarization free energy of solvation -31.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds