Wall clock time and date at job start Tue Mar 31 2020 00:44:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42907 * 109.46534 * 2 1 4 4 C 1.35898 * 116.99612 * 179.97438 * 3 2 1 5 5 C 1.38806 * 120.02033 * 0.02687 * 4 3 2 6 6 C 1.38177 * 120.08323 * 179.97438 * 5 4 3 7 7 C 1.38170 * 120.12129 * 359.74499 * 6 5 4 8 8 C 1.38882 * 120.03835 * 0.50657 * 7 6 5 9 9 N 1.39942 * 120.03946 * 179.76918 * 8 7 6 10 10 C 1.34776 * 119.99755 * 326.52851 * 9 8 7 11 11 O 1.21585 * 120.00612 * 354.67878 * 10 9 8 12 12 N 1.34780 * 119.99725 * 174.68980 * 10 9 8 13 13 C 1.46507 * 120.00063 * 179.97438 * 12 10 9 14 14 H 1.08997 * 109.46956 * 34.99166 * 13 12 10 15 15 C 1.52997 * 109.46690 * 274.99865 * 13 12 10 16 16 C 1.50695 * 109.47029 * 154.99644 * 13 12 10 17 17 H 1.07992 * 120.00512 * 359.97438 * 16 13 12 18 18 C 1.37884 * 119.99610 * 179.97438 * 16 13 12 19 19 N 1.31512 * 120.00158 * 359.97438 * 18 16 13 20 20 Si 1.86804 * 119.99919 * 179.97438 * 18 16 13 21 21 H 1.48502 * 109.46868 * 59.99881 * 20 18 16 22 22 H 1.48493 * 109.46924 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.46833 * 300.00051 * 20 18 16 24 24 C 1.38584 * 120.02312 * 179.97438 * 4 3 2 25 25 H 1.09001 * 109.47514 * 60.00276 * 1 2 3 26 26 H 1.09003 * 109.47260 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47678 * 300.00009 * 1 2 3 28 28 H 1.08996 * 109.47179 * 240.00477 * 2 1 3 29 29 H 1.08998 * 109.47017 * 119.99781 * 2 1 3 30 30 H 1.07999 * 119.96079 * 359.97438 * 5 4 3 31 31 H 1.07999 * 119.93536 * 179.97438 * 6 5 4 32 32 H 1.07998 * 119.97549 * 180.25562 * 7 6 5 33 33 H 0.97002 * 119.99962 * 146.52334 * 9 8 7 34 34 H 0.96996 * 120.00091 * 359.97438 * 12 10 9 35 35 H 1.08999 * 109.47364 * 299.99320 * 15 13 12 36 36 H 1.09001 * 109.47335 * 59.99711 * 15 13 12 37 37 H 1.09001 * 109.47085 * 180.02562 * 15 13 12 38 38 H 0.96997 * 120.00083 * 180.02562 * 19 18 16 39 39 H 1.08007 * 120.05635 * 0.05034 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.3535 1.5255 0.0005 5 6 4.1994 0.4250 0.0005 6 6 5.5695 0.6046 0.0005 7 6 6.1017 1.8797 -0.0047 8 6 5.2599 2.9844 0.0006 9 7 5.7989 4.2758 0.0001 10 6 6.9598 4.5217 0.6392 11 8 7.4892 3.6466 1.2965 12 7 7.5338 5.7379 0.5497 13 6 8.7954 6.0054 1.2448 14 1 9.4124 5.1070 1.2365 15 6 8.5047 6.4109 2.6911 16 6 9.5262 7.1233 0.5468 17 1 9.0944 7.5878 -0.3273 18 6 10.7462 7.5532 1.0243 19 7 11.2718 6.9879 2.0891 20 14 11.6525 8.9384 0.1587 21 1 10.8117 10.1624 0.1691 22 1 12.9306 9.2104 0.8641 23 1 11.9353 8.5439 -1.2447 24 6 3.8836 2.8059 0.0000 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5137 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.7864 -0.5728 0.0005 31 1 6.2255 -0.2533 0.0009 32 1 7.1728 2.0173 -0.0089 33 1 5.3371 4.9940 -0.4602 34 1 7.1116 6.4360 0.0251 35 1 7.8876 7.3094 2.6996 36 1 7.9760 5.6023 3.1959 37 1 9.4432 6.6104 3.2082 38 1 12.1299 7.2905 2.4252 39 1 3.2269 3.6633 0.0000 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157291649.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:44:02 Heat of formation + Delta-G solvation = -66.236838 kcal Electronic energy + Delta-G solvation = -20852.005582 eV Core-core repulsion = 17566.089084 eV Total energy + Delta-G solvation = -3285.916497 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.70993 -40.68914 -38.60197 -36.77982 -35.54801 -34.30450 -32.86777 -31.42917 -30.54770 -29.54380 -27.33341 -25.04244 -23.83872 -23.54032 -22.15712 -21.51547 -19.90103 -19.42592 -18.08914 -17.35180 -17.09177 -17.00529 -16.79652 -16.64493 -15.97585 -15.71969 -15.07048 -14.67157 -14.44907 -14.37061 -14.24765 -13.79411 -13.34797 -13.18836 -13.04751 -12.98273 -12.84270 -12.72285 -12.62248 -12.26482 -12.14313 -11.86513 -11.69935 -11.31613 -11.11714 -11.04072 -10.59760 -9.87542 -9.40974 -8.93936 -8.17070 -6.34537 0.29255 0.48087 1.45791 1.48391 1.55666 1.65635 2.14490 2.34047 2.44333 2.85985 3.13422 3.42611 3.87304 4.09959 4.11686 4.19606 4.31355 4.35652 4.43501 4.55391 4.68045 4.74838 4.92895 4.93997 4.99172 5.08935 5.20658 5.27470 5.33178 5.33719 5.41883 5.54671 5.60611 5.65859 5.83649 5.92512 6.08964 6.24668 6.48111 6.72675 7.20385 7.33929 7.64758 8.89295 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.048128 B = 0.002940 C = 0.002899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.643584 B = 9522.104148 C = 9656.571042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.043 3.957 3 O -0.329 6.329 4 C 0.144 3.856 5 C -0.224 4.224 6 C -0.061 4.061 7 C -0.185 4.185 8 C 0.199 3.801 9 N -0.676 5.676 10 C 0.694 3.306 11 O -0.621 6.621 12 N -0.713 5.713 13 C 0.289 3.711 14 H 0.000 1.000 15 C -0.135 4.135 16 C -0.547 4.547 17 H 0.075 0.925 18 C 0.014 3.986 19 N -0.917 5.917 20 Si 0.975 3.025 21 H -0.264 1.264 22 H -0.287 1.287 23 H -0.271 1.271 24 C -0.191 4.191 25 H 0.063 0.937 26 H 0.100 0.900 27 H 0.060 0.940 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.156 0.844 31 H 0.147 0.853 32 H 0.108 0.892 33 H 0.422 0.578 34 H 0.404 0.596 35 H 0.040 0.960 36 H 0.010 0.990 37 H 0.068 0.932 38 H 0.266 0.734 39 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.750 -11.182 -6.896 23.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.031 4.031 3 O -0.243 6.243 4 C 0.098 3.902 5 C -0.244 4.244 6 C -0.079 4.079 7 C -0.206 4.206 8 C 0.103 3.897 9 N -0.325 5.325 10 C 0.394 3.606 11 O -0.501 6.501 12 N -0.366 5.366 13 C 0.185 3.815 14 H 0.018 0.982 15 C -0.194 4.194 16 C -0.585 4.585 17 H 0.093 0.907 18 C -0.186 4.186 19 N -0.555 5.555 20 Si 0.799 3.201 21 H -0.188 1.188 22 H -0.212 1.212 23 H -0.196 1.196 24 C -0.213 4.213 25 H 0.082 0.918 26 H 0.119 0.881 27 H 0.079 0.921 28 H 0.093 0.907 29 H 0.089 0.911 30 H 0.173 0.827 31 H 0.165 0.835 32 H 0.126 0.874 33 H 0.260 0.740 34 H 0.239 0.761 35 H 0.060 0.940 36 H 0.029 0.971 37 H 0.087 0.913 38 H 0.075 0.925 39 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -19.195 -11.718 -6.179 23.322 hybrid contribution 0.659 1.141 -0.445 1.391 sum -18.536 -10.578 -6.624 22.346 Atomic orbital electron populations 1.21811 0.91491 1.04187 1.03147 1.23108 0.96838 0.80634 1.02532 1.86041 1.18192 1.31546 1.88511 1.18645 0.82892 0.93369 0.95299 1.21420 0.93553 0.98993 1.10395 1.21032 0.95178 0.96350 0.95374 1.21143 0.99908 0.92792 1.06721 1.17305 0.91426 0.83906 0.97031 1.42502 1.23372 1.10304 1.56336 1.16213 0.80812 0.83647 0.79925 1.90870 1.65599 1.46566 1.47113 1.45469 1.25915 1.11288 1.53885 1.18269 0.79134 0.94796 0.89277 0.98162 1.21933 1.00989 0.97689 0.98786 1.21488 1.04950 1.18605 1.13487 0.90733 1.25808 0.97895 0.99326 0.95569 1.70046 1.18662 1.42894 1.23907 0.85361 0.77469 0.78965 0.78304 1.18836 1.21210 1.19606 1.20036 0.92365 0.96815 1.12074 0.91764 0.88106 0.92059 0.90674 0.91141 0.82662 0.83531 0.87413 0.73987 0.76062 0.94041 0.97084 0.91291 0.92485 0.83670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 10.28 71.98 0.74 -0.71 16 2 C 0.04 0.58 5.46 71.98 0.39 0.97 16 3 O -0.33 -7.03 10.13 -92.40 -0.94 -7.97 16 4 C 0.14 3.52 6.68 22.49 0.15 3.67 16 5 C -0.22 -4.97 9.04 22.39 0.20 -4.77 16 6 C -0.06 -1.58 10.03 22.24 0.22 -1.36 16 7 C -0.18 -6.20 8.65 22.41 0.19 -6.01 16 8 C 0.20 6.32 6.27 38.13 0.24 6.55 16 9 N -0.68 -21.47 5.35 -317.23 -1.70 -23.17 16 10 C 0.69 29.16 8.26 179.05 1.48 30.64 16 11 O -0.62 -31.70 13.70 -3.98 -0.05 -31.75 16 12 N -0.71 -30.04 5.07 -461.41 -2.34 -32.38 16 13 C 0.29 15.12 2.56 44.24 0.11 15.24 16 14 H 0.00 0.03 7.58 -2.39 -0.02 0.01 16 15 C -0.13 -6.95 9.26 71.98 0.67 -6.28 16 16 C -0.55 -28.88 8.73 25.60 0.22 -28.66 16 17 H 0.07 3.64 7.74 -2.91 -0.02 3.62 16 18 C 0.01 0.76 5.30 84.66 0.45 1.21 16 19 N -0.92 -52.63 11.32 21.45 0.24 -52.39 16 20 Si 0.97 41.83 29.54 68.60 2.03 43.86 16 21 H -0.26 -10.73 7.11 99.48 0.71 -10.03 16 22 H -0.29 -12.24 7.11 99.48 0.71 -11.54 16 23 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 24 C -0.19 -5.10 9.90 22.48 0.22 -4.88 16 25 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 26 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 27 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.08 0.81 7.66 -2.39 -0.02 0.80 16 29 H 0.07 0.83 7.66 -2.39 -0.02 0.82 16 30 H 0.16 2.38 6.29 -2.91 -0.02 2.36 16 31 H 0.15 3.07 8.06 -2.91 -0.02 3.04 16 32 H 0.11 4.31 6.42 -2.91 -0.02 4.29 16 33 H 0.42 9.91 8.83 -92.71 -0.82 9.09 16 34 H 0.40 13.99 8.56 -92.71 -0.79 13.20 16 35 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 37 H 0.07 3.86 6.07 -2.39 -0.01 3.85 16 38 H 0.27 14.47 8.31 -92.71 -0.77 13.70 16 39 H 0.15 3.31 8.06 -2.91 -0.02 3.29 16 Total: -1.00 -70.12 328.80 2.00 -68.12 By element: Atomic # 1 Polarization: 30.60 SS G_CDS: -0.53 Total: 30.06 kcal Atomic # 6 Polarization: 0.32 SS G_CDS: 5.30 Total: 5.62 kcal Atomic # 7 Polarization: -104.14 SS G_CDS: -3.79 Total: -107.94 kcal Atomic # 8 Polarization: -38.73 SS G_CDS: -0.99 Total: -39.72 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.86 kcal Total: -70.12 2.00 -68.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157291649.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.884 kcal (2) G-P(sol) polarization free energy of solvation -70.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds